Tao Jiang

27 papers Journal 17Unranked 10
YearRankTypeTitle / Venue / Authors
2026 J jnl
GFSeeker: a splicing-graph-based approach for accurate gene fusion detection from long-read RNA sequencing data.
Briefings Bioinform.
Bingyan Wang, Heng Hu, Runtian Gao, Guohua Wang, Tao Jiang
2026 J jnl
cuteSV-OL: a real-time structural variation detection framework for nanopore sequencing devices.
Bioinform.
Weimin Guo, Yadong Liu, Yadong Wang, Tao Jiang
2025 J jnl
CKG-TPI: integrating collaborative knowledge graph with sequence interactions for TCR-peptide binding specificity.
Briefings Bioinform.
Yue Liu, Haoyan Wang, Guohua Wang, Yadong Liu, Tao Jiang, Yadong Wang
2025 — conf
DNAMatch: An Ultra-Fast and Memory-Efficient Deep Learning Framework for Aligning Ultra-Long DNA Fragments.
BIBM
Yuansong Zhu, Chuanmin Wu, Yadong Wang, Tao Jiang, Yadong Liu
2025 — conf
MethSV: A Long-Read-Based Framework for Profiling DNA Methylation in Structural Variation.
BIBM
Yang Li, Weize Kong, Yadong Liu, Yadong Wang, Tao Jiang
2025 — conf
RVC: A Real-Time Variant Calling Framework for Short-Read Sequencing Data.
BIBM
Miao Cui, Xian Yu, Tao Jiang, Yadong Wang, Bo Liu, Guohua Wang, Yadong Liu
2025 J jnl
SVHunter: long-read-based structural variation detection through the transformer model.
Briefings Bioinform.
Runtian Gao, Heng Hu, Zhongjun Jiang, Shuqi Cao, Guohua Wang, Yuming Zhao, Tao Jiang
2025 — conf
SimPG: A Pangenome-Guided Population-Specific Human Genome Simulation Tool.
BIBM
Hongyang Yu, Hao Wang, Yadong Liu, Yadong Wang, Tao Jiang
2024 — conf
Comprehensive Benchmarking of Genotype Imputation Tools Using a Large-Scale Chinese Reference Panel.
BIBM
Xin Li, Yadong Liu, Zhongbo Yang, Yadong Wang, Tao Jiang
2024 — conf
Comprehensive evaluation of haplotype phasing tools with different strategies across diverse sequence technologies.
BIBM
Zhongbo Yang, Zhenhao Lu, Xin Li, Tao Jiang, Yadong Wang, Yadong Liu
2024 J jnl
DIRMC: a database of immunotherapy-related molecular characteristics.
Database J. Biol. Databases Curation
Yue Liu, Yuhuan Zhou, Xiumei Hu, Wuri Le-Ge, Haoyan Wang, Tao Jiang, Junyi Li, Yang Hu, Yadong Wang
2024 J jnl
Kled: an ultra-fast and sensitive structural variant detection tool for long-read sequencing data.
Briefings Bioinform.
Zhendong Zhang, Tao Jiang, Gaoyang Li, Shuqi Cao, Yadong Liu, Bo Liu, Yadong Wang
2024 J jnl
MEHunter: transformer-based mobile element variant detection from long reads.
Bioinform.
Tao Jiang, Zuji Zhou, Zhendong Zhang, Shuqi Cao, Yadong Wang, Yadong Liu
2024 J jnl
SVDF: enhancing structural variation detect from long-read sequencing via automatic filtering strategies.
Briefings Bioinform.
Heng Hu, Runtian Gao, Wentao Gao, Bo Gao, Zhongjun Jiang, Murong Zhou, Guohua Wang, Tao Jiang
2024 J jnl
miniSNV: accurate and fast single nucleotide variant calling from nanopore sequencing data.
Briefings Bioinform.
Miao Cui, Yadong Liu, Xian Yu, Hongzhe Guo, Tao Jiang, Yadong Wang, Bo Liu
2023 J jnl
BIR: Biomedical Information Retrieval System for Cancer Treatment in Electronic Health Record Using Transformers.
Sensors
Pir Noman Ahmad, Yuanchao Liu, Khalid Khan, Tao Jiang, Umama Burhan
2023 — conf
Comprehensive evaluation of RNA-seq alignment methods based on long-read sequencing data.
BIBM
Yadong Liu, Hongzhe Guo, Zhenhao Lu, Yadong Wang, Zhongyu Liu, Tao Jiang
2023 J jnl
Identifying cancer driver genes using a two-stage random walk with restart on a gene interaction network.
Comput. Biol. Medicine
Ping Meng, Guohua Wang, Hongzhe Guo, Tao Jiang
2023 J jnl
Reply: Correspondence on NanoVar's performance outlined by Jiang T. et al. in 'Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation'.
BMC Bioinform.
Tao Jiang, Shiqi Liu, Hongzhe Guo
2022 — conf
Comparison of the Nanopore and PacBio sequencing technologies for DNA 5-methylcytosine detection.
BIBM
Yadong Liu, Zhongyu Liu, Tao Jiang, Tianyi Zang, Yadong Wang
2022 J jnl
Evaluation of classification in single cell atac-seq data with machine learning methods.
BMC Bioinform.
Hongzhe Guo, Zhongbo Yang, Tao Jiang, Shiqi Liu, Yadong Wang, Zhe Cui
2021 J jnl
Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation.
BMC Bioinform.
Tao Jiang, Shiqi Liu, Shuqi Cao, Yadong Liu, Zhe Cui, Yadong Wang, Hongzhe Guo
2021 J jnl
SKSV: ultrafast structural variation detection from circular consensus sequencing reads.
Bioinform.
Yadong Liu, Tao Jiang, Junhao Su, Bo Liu, Tianyi Zang, Yadong Wang
2020 — conf
Assessment of Machine Learning Methods for Classification in Single Cell ATAC-seq.
BIBM
Zhe Cui, Bo Liu, Liran Juan, Tianyi Zang, Tao Jiang, Yadong Wang
2019 J jnl
rMETL: sensitive mobile element insertion detection with long read realignment.
Bioinform.
Tao Jiang, Bo Liu, Junyi Li, Yadong Wang
2018 — conf
rCANID: read Clustering and Assembly-based Novel Insertion Detection tool.
BIBM
Yilei Fu, Tao Jiang, Bo Liu, Yadong Wang
2017 J jnl
rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering.
Bioinform.
Bo Liu, Tao Jiang, Siu-Ming Yiu, Junyi Li, Yadong Wang