Tamotsu Noguchi

28 papers A 1C 2Misc 4Journal 16Unranked 5
YearRankTypeTitle / Venue / Authors
2019 C conf
A Privacy-Preserving Query System using Fully Homomorphic Encryption with Real-World Implementation for Medicine-Side Effect Search.
iiWAS
Yusheng Jiang, Tamotsu Noguchi, Nobuyuki Kanno, Yoshiko Yasumura, Takuya Suzuki, Yu Ishimaki, Hayato Yamana
2016 — conf
Identifying Protein Short Linear Motifs by Position-Specific Scoring Matrix.
ICSI (2)
Chun Fang, Tamotsu Noguchi, Hayato Yamana, Fuzhen Sun
2015 J jnl
Condensing position-specific scoring matrixs by the Kidera factors for ligand-binding site prediction.
Int. J. Data Min. Bioinform.
Chun Fang, Tamotsu Noguchi, Hayato Yamana
2014 J jnl
Analysis of evolutionary conservation patterns and their influence on identifying protein functional sites.
J. Bioinform. Comput. Biol.
Chun Fang, Tamotsu Noguchi, Hayato Yamana
2014 J jnl
Simplified sequence-based method for ATP-binding prediction using contextual local evolutionary conservation.
Algorithms Mol. Biol.
Chun Fang, Tamotsu Noguchi, Hayato Yamana
2013 J jnl
MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation.
BMC Bioinform.
Chun Fang, Tamotsu Noguchi, Daisuke Tominaga, Hayato Yamana
2013 J jnl
SCPSSMpred: A General Sequence-based Method for Ligand-binding Site Prediction.
Inf. Media Technol.
Chun Fang, Tamotsu Noguchi, Hayato Yamana
2011 J jnl
SAHG, a comprehensive database of predicted structures of all human proteins.
Nucleic Acids Res.
Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota
2010 J jnl
POODLE-I: Disordered Region Prediction by Integrating POODLE Series and Structural Information Predictors Based on a Workflow Approach.
Silico Biol.
Shuichi Hirose, Kana Shimizu, Tamotsu Noguchi
2010 J jnl
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomed. Semant.
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
2008 J jnl
Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation.
Inf. Media Technol.
Masakazu Sekijima, Junta Doi, Shinya Honda, Tamotsu Noguchi, Shigenori Shimizu, Yutaka Akiyama
2008 Misc conf
Large-Scale Computing for Protein-Protein Binding Free Energy Calculation.
PDPTA
Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima
2007 Misc conf
Development of Molecular Dynamics Simulation Based Flexible Docking System.
PDPTA
Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe
2007 Misc conf
Development of an SVM based Prediction System for Metalbinding Sites in Protein.
PDPTA
Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe
2007 — conf
Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L.
Parallel and Distributed Computing and Networks
Masakazu Sekijima, Junta Doi, Tamotsu Noguchi, Yutaka Akiyama, Shigenori Shimizu
2007 J jnl
POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.
Bioinform.
Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi
2007 J jnl
POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix.
Bioinform.
Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi
2007 J jnl
Predicting mostly disordered proteins by using structure-unknown protein data.
BMC Bioinform.
Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii, Tamotsu Noguchi
2005 C conf
Feature Selection Based on Physicochemical Properties of Redefined N-term Region and C-term Regions for Predicting Disorder.
CIBCB
Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Tamotsu Noguchi
2003 J jnl
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003.
Nucleic Acids Res.
Tamotsu Noguchi, Yutaka Akiyama
2002 J jnl
Using Data Compression for Multidimensional Distribution Analysis.
IEEE Intell. Syst.
Kentaro Onizuka, Tamotsu Noguchi, Yutaka Akiyama, Hideo Matsuda
2001 J jnl
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB).
Nucleic Acids Res.
Tamotsu Noguchi, Hideo Matsuda, Yutaka Akiyama
2000 J jnl
Quick selection of representative protein chain sets based on customizable requirements.
Bioinform.
Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando, Hideo Matsuda, Yutaka Akiyama
1999 — conf
Biological- and Chemical- Parallel Applications on a PC Cluster.
ISHPC
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando
1999 Misc conf
ESCAPE: Parallel Tree Search System for Conformational Analysis of Peptides.
PDPTA
Makoto Ando, Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi
1997 A conf
PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank).
ISMB
Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, Minoru Saito
1997 — conf
Parallel PDB Data Retriever "PDB Diving Booster".
ISHPC
Kentaro Onizuka, Tamotsu Noguchi, Minoru Saito, Yutaka Akiyama
1997 — conf
Parallelization of Space Plasma Particle Simulation.
ISHPC
Yutaka Akiyama, Kiyotaka Misoo, Yoshiharu Omura, Hiroshi Matsumoto, Minoru Saito, Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando