Tamer Kahveci

144 papers A* 7A 1B 5C 4Misc 7Journal 70Unranked 44
YearRankTypeTitle / Venue / Authors
2026 J jnl
CHARME: A Chain-based Reinforcement Learning Approach for the Minor Embedding Problem.
ACM Trans. Quantum Comput.
Hoang M. Ngo, Nguyen Do, Minh N. Vu, Tre' R. Jeter, Tamer Kahveci, My T. Thai
2026 J jnl
FIDDLE: Reinforcement Learning for Quantum Fidelity Enhancement.
ACM Trans. Quantum Comput.
Hoang M. Ngo, Tamer Kahveci, My T. Thai
2026 J jnl
Guaranteeing Privacy in Hybrid Quantum Learning through Theoretical Mechanisms.
CoRR
Hoang M. Ngo, Tre' R. Jeter, Incheol Shin, Wanli Xing, Tamer Kahveci, My T. Thai
2025 J jnl
Differential causal networks highlight sex-based differences in human tissues.
Briefings Bioinform.
Annamaria Defilippo, Kimberly Glass, Federico M. Giorgi, Tamer Kahveci, Pierangelo Veltri, Pietro Hiram Guzzi
2025 J jnl
FIDDLE: Reinforcement Learning for Quantum Fidelity Enhancement.
CoRR
Hoang M. Ngo, Tamer Kahveci, My T. Thai
2025 — conf
Identifying Interdependent Drug Resistance Genes in Large Scale Transcriptome.
BIBM
Richard Bailey, Pierangelo Veltri, Tamer Kahveci
2025 J jnl
OLTA: Optimizing bait seLection for TArgeted sequencing.
Bioinform.
Mete Orhun Minbay, Richard Sun, Vijay Ramachandran, Ahmet Ay, Tamer Kahveci
2025 — conf
PLATO: Predicting Longitudinally-Aligned Time Observations of biological networks.
BCB
Tamim Khatib, Shahaddin Gafarov, Justin Strikowski, Mehmet Turan, Tamer Kahveci
2025 — conf
Vision transformer supported Kolmogorov-Arnold networks for survival prediction in lung cancer.
BCB
Mert Gökpinar, Yasin Almalioglu, Mustafa Taha Koçyigit, Tamer Kahveci, Derya Demir, Kayhan Basak, Mehmet Turan
2024 J jnl
CHARME: A chain-based reinforcement learning approach for the minor embedding problem.
CoRR
Hoang M. Ngo, Nguyen Hoang Khoi Do, Minh N. Vu, Tamer Kahveci, My T. Thai
2024 — conf
DANTE: Determining Adaptation trajectories in biological Networks Through Evolutionary mapping.
BCB
Tamim Khatib, Oscar Diaz de la Rua, Kawthar Moria, Tamer Kahveci
2024 J jnl
IDEEA: information diffusion model for integrating gene expression and EEG data in identifying Alzheimer's disease markers.
Mach. Learn. Sci. Technol.
Enes Ozelbas, Tuba Sevimoglu, Tamer Kahveci
2024 J jnl
Morphological profiling for drug discovery in the era of deep learning.
Briefings Bioinform.
Qiaosi Tang, Ranjala Ratnayake, Gustavo de M. Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
2023 — conf
ATOM: An Efficient Topology Adaptive Algorithm for Minor Embedding in Quantum Computing.
ICC
Hoang M. Ngo, Tamer Kahveci, My T. Thai
2023 J jnl
Morphological Profiling for Drug Discovery in the Era of Deep Learning.
CoRR
Qiaosi Tang, Ranjala Ratnayake, Gustavo de M. Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
2023 J jnl
Optimal Supervised Reduction of High Dimensional Transcription Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Richard Bailey, Aisharjya Sarkar, Aaditya Singh, Alin Dobra, Tamer Kahveci
2023 — conf
PartialFibers: An Efficient Method for Predicting Drug-Drug Interactions.
ICCABS
Aysegul Bumin, Kejun Huang, Tamer Kahveci
2023 J jnl
QOMIC: Quantum optimization for motif identification.
CoRR
Hoang M. Ngo, Tamim Khatib, My T. Thai, Tamer Kahveci
2023 — conf
Vulture: VULnerabilities in impuTing drUg REsistance.
BCB
Aysegul Bumin, Megan Shah, Kejun Huang, Tamer Kahveci
2022 J jnl
Data Perturbation and Recovery of Time Series Gene Expression Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Aisharjya Sarkar, Prabhat Mishra, Tamer Kahveci
2022 — conf
FiT: fiber-based tensor completion for drug repurposing.
BCB
Aysegul Bumin, Anna M. Ritz, Donna K. Slonim, Tamer Kahveci, Kejun Huang
2022 — conf
Identification of co-existing embeddings of a motif in multilayer networks.
BCB
Yuanfang Ren, Aisharjya Sarkar, Aysegul Bumin, Kejun Huang, Pierangelo Veltri, Alin Dobra, Tamer Kahveci
2022 — conf
Optimal separation of high dimensional transcriptome for complex multigenic traits.
BCB
Aisharjya Sarkar, Aaditya Singh, Richard Bailey, Alin Dobra, Tamer Kahveci
2022 J jnl
Pattern Discovery in Multilayer Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yuanfang Ren, Aisharjya Sarkar, Pierangelo Veltri, Ahmet Ay, Alin Dobra, Tamer Kahveci
2021 J jnl
ANCA: Alignment-Based Network Construction Algorithm.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kevin Chow, Aisharjya Sarkar, Rasha Elhesha, Pietro Cinaglia, Ahmet Ay, Tamer Kahveci
2021 B conf
Efficiently Merging r-indexes.
DCC
Marco Oliva, Massimiliano Rossi, Jouni Sirén, Giovanni Manzini, Tamer Kahveci, Travis Gagie, Christina Boucher
2020 — conf
A method to assess COVID-19 infected numbers in Italy during peak pandemic period.
BIBM
Giuseppe Tradigo, Pietro Hiram Guzzi, Tamer Kahveci, Pierangelo Veltri
2020 J jnl
An Efficient Algorithm for Identifying Mutated Subnetworks Associated with Survival in Cancer.
IEEE ACM Trans. Comput. Biol. Bioinform.
Aisharjya Sarkar, Yilmaz Atay, Alana Lorraine Erickson, Ivan Arisi, Cesare Saltini, Tamer Kahveci
2020 J jnl
Stability Analysis of Biological Networks' Diffusion State.
IEEE ACM Trans. Comput. Biol. Bioinform.
Volkan Altuntas, Murat Gök, Tamer Kahveci
2019 J jnl
A New Algorithm for Counting Independent Motifs in Probabilistic Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Aisharjya Sarkar, Yuanfang Ren, Rasha Elhesha, Tamer Kahveci
2019 J jnl
Aligning optical maps to de Bruijn graphs.
Bioinform.
Kingshuk Mukherjee, Bahar Alipanahi, Tamer Kahveci, Leena Salmela, Christina Boucher
2019 J jnl
Characterizing building blocks of resource constrained biological networks.
BMC Bioinform.
Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci
2019 — conf
Co-evolving Patterns in Temporal Networks of Varying Evolution.
BCB
Rasha Elhesha, Aisharjya Sarkar, Pietro Cinaglia, Christina Boucher, Tamer Kahveci
2019 — conf
Finding Conserved Patterns in Multilayer Networks.
BCB
Yuanfang Ren, Aisharjya Sarkar, Ahmet Ay, Alin Dobra, Tamer Kahveci
2019 J jnl
Guest Editorial for the ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics.
IEEE ACM Trans. Comput. Biol. Bioinform.
Amarda Shehu, Giuseppe Pozzi, Tamer Kahveci
2019 J jnl
Guest Editorial on the Special Issue on Informatics on Biomedical Data Learning, Reasoning, and Representation.
IEEE J. Biomed. Health Informatics
Tamer Kahveci, Giuseppe Pozzi, Amarda Shehu, May Dongmei Wang
2019 J jnl
Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC).
BMC Bioinform.
Byung-Jun Yoon, Xiaoning Qian, Tamer Kahveci, Ranadip Pal
2018 — conf
ANCA: Alignment-based Network Construction Algorithm.
BCB
Kevin Chow, Ahmet Ay, Rasha Elhesha, Tamer Kahveci
2018 — conf
Characterizing Building Blocks of Resource Constrained Biological Networks.
BCB
Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci
2018 J jnl
Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci
2018 J jnl
Counting motifs in dynamic networks.
BMC Syst. Biol.
Kingshuk Mukherjee, Md Mahmudul Hasan, Christina Boucher, Tamer Kahveci
2018 — conf
Identification of Co-evolving Temporal Networks.
BCB
Rasha Elhesha, Aisharjya Sarkar, Christina Boucher, Tamer Kahveci
2018 J jnl
Identification of jointly correlated gene sets.
J. Bioinform. Comput. Biol.
Yuanfang Ren, Ahmet Ay, Travis A. Gerke, Tamer Kahveci
2018 — ch.
Index Structures for Biological Sequences.
Encyclopedia of Database Systems (2nd ed.)
Tamer Kahveci
2018 J jnl
ProMotE: an efficient algorithm for counting independent motifs in uncertain network topologies.
BMC Bioinform.
Yuanfang Ren, Aisharjya Sarkar, Tamer Kahveci
2018 J jnl
Selected research articles from the 2017 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC).
BMC Bioinform.
Byung-Jun Yoon, Xiaoning Qian, Tamer Kahveci, Ranadip Pal
2018 J jnl
Shortest path counting in probabilistic biological networks.
BMC Bioinform.
Yuanfang Ren, Ahmet Ay, Tamer Kahveci
2017 — conf
CNB-MAC'17: The Fourth International Workshop on Computational Network Biology: Modeling, Analysis, and Control.
BCB
Byung-Jun Yoon, Xiaoning Qian, Tamer Kahveci
2017 — conf
Highlights Talks at ACM BCB 2017.
BCB
Amarda Shehu, Tamer Kahveci, Giuseppe Pozzi
2017 J jnl
Motif centrality in food web networks.
J. Complex Networks
Rasha Elhesha, Tamer Kahveci, Benjamin Baiser
2017 — ed.
Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2017, Boston, MA, USA, August 20-23, 2017
BCB
Nurit Haspel, Lenore J. Cowen, Amarda Shehu, Tamer Kahveci, Giuseppe Pozzi
2017 J jnl
Selected research articles from the 2016 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC).
BMC Bioinform.
Byung-Jun Yoon, Xiaoning Qian, Tamer Kahveci
2016 — conf
Counting independent motifs in probabilistic networks.
BCB
Aisharjya Sarkar, Yuanfang Ren, Rasha Elhesha, Tamer Kahveci
2016 J jnl
Identification of large disjoint motifs in biological networks.
BMC Bioinform.
Rasha Elhesha, Tamer Kahveci
2016 J jnl
Identifying the topology of signaling networks from partial RNAi data.
BMC Syst. Biol.
Yuanfang Ren, Qiyao Wang, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci
2015 — conf
Computing interaction probabilities in signaling networks.
BCB
Haitham Gabr, Juan Carlos Rivera-Mulia, David M. Gilbert, Tamer Kahveci
2015 J jnl
Computing interaction probabilities in signaling networks.
EURASIP J. Bioinform. Syst. Biol.
Haitham Gabr, Juan Carlos Rivera-Mulia, David M. Gilbert, Tamer Kahveci
2015 — conf
Construction of signaling networks with incomplete RNAi data.
BIBM
Qiyao Wang, Yuanfang Ren, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci
2015 — conf
Counting motifs in probabilistic biological networks.
BCB
Andrei Todor, Alin Dobra, Tamer Kahveci
2015 — conf
Estimating reachability in dense biological networks.
BCB
Haitham Gabr, Alin Dobra, Tamer Kahveci
2015 J jnl
Hierarchical decomposition of dynamically evolving regulatory networks.
BMC Bioinform.
Ahmet Ay, Dihong Gong, Tamer Kahveci
2015 J jnl
Indexing a protein-protein interaction network expedites network alignment.
BMC Bioinform.
Md Mahmudul Hasan, Tamer Kahveci
2015 — conf
Multiple reference networks improve accuracy of signaling network construction.
BCB
Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci
2015 — ed.
Proceedings of the Eighth International C* Conference on Computer Science & Software Engineering, Yokohama, Japan, July 13-15, 2015
C3S2E
Jake Yue Chen, Mohammed J. Zaki, Tamer Kahveci, Saeed Salem, Mehmet Koyutürk
2015 J jnl
Reachability Analysis in Probabilistic Biological Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Haitham Gabr, Andrei Todor, Alin Dobra, Tamer Kahveci
2015 J jnl
Signal reachability facilitates characterization of probabilistic signaling networks.
BMC Bioinform.
Haitham Gabr, Tamer Kahveci
2014 — conf
Characterization of probabilistic signaling networks through signal propagation.
ICCABS
Haitham Gabr, Tamer Kahveci
2014 — conf
Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction.
BCB
Ryan Cobb, Rasha Elhesha, J. Gordon Burleigh, Tamer Kahveci
2014 — conf
Incremental network querying in biological networks.
BCB
Md Mahmudul Hasan, Tamer Kahveci
2014 J jnl
Large scale analysis of signal reachability.
Bioinform.
Andrei Todor, Haitham Gabr, Alin Dobra, Tamer Kahveci
2014 J jnl
Topologically associating domains are stable units of replication-timing regulation Open.
Nat.
Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert
2013 J jnl
A scalable method for discovering significant subnetworks.
BMC Syst. Biol.
Md Mahmudul Hasan, Yusuf Kavurucu, Tamer Kahveci
2013 J jnl
Characterizing the Topology of Probabilistic Biological Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Andrei Todor, Alin Dobra, Tamer Kahveci
2013 — conf
Color distribution can accelerate network alignment.
BCB
Md Mahmudul Hasan, Tamer Kahveci
2013 Misc conf
From Uncertain Protein Interaction Networks to Signaling Pathways Through Intensive Color Coding.
Pacific Symposium on Biocomputing
Haitham Gabr, Alin Dobra, Tamer Kahveci
2013 J jnl
Guest Editorial for ACM BCB.
IEEE ACM Trans. Comput. Biol. Bioinform.
Tamer Kahveci, Mona Singh
2013 J jnl
Making massive probabilistic databases practical.
CoRR
Andrei Todor, Alin Dobra, Tamer Kahveci, Christopher Dudley
2013 — conf
PReach: Reachability in Probabilistic Signaling Networks.
BCB
Haitham Gabr, Andrei Todor, Helia Zandi, Alin Dobra, Tamer Kahveci
2013 J jnl
Probabilistic Biological Network Alignment.
IEEE ACM Trans. Comput. Biol. Bioinform.
Andrei Todor, Alin Dobra, Tamer Kahveci
2013 — conf
Reachability analysis in large probabilistic biological networks.
BCB
Andrei Todor, Haitham Gabr, Alin Dobra, Tamer Kahveci
2013 J jnl
Stability analysis of phylogenetic trees.
Bioinform.
Saad I. Sheikh, Tamer Kahveci, Sanjay Ranka, J. Gordon Burleigh
2012 J jnl
A scalable method for identifying frequent subtrees in sets of large phylogenetic trees.
BMC Bioinform.
Avinash Ramu, Tamer Kahveci, J. Gordon Burleigh
2012 — ed.
ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 12, Orlando, FL, USA - October 08 - 10, 2012
BCB
Sanjay Ranka, Tamer Kahveci, Mona Singh
2012 J jnl
HIDEN: Hierarchical decomposition of regulatory networks.
BMC Bioinform.
Günhan Gülsoy, Nirmalya Bandyopadhyay, Tamer Kahveci
2012 — conf
Inferring gene functions from metabolic reactions.
GENSiPS
Günhan Gülsoy, Tamer Kahveci
2012 J jnl
Large-Scale Signaling Network Reconstruction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Seyedsasan Hashemikhabir, Eyüp Serdar Ayaz, Yusuf Kavurucu, Tolga Can, Tamer Kahveci
2012 J jnl
Metabolic network alignment in large scale by network compression.
BMC Bioinform.
Ferhat Ay, Michael Dang, Tamer Kahveci
2012 — ed.
Proceedings of the 11th International Workshop on Data Mining in Bioinformatics, BIOKDD 2012, Beijing, China, August 12, 2012
BIOKDD
Tamer Kahveci, Saeed Salem, Mehmet Koyutürk, Jake Yue Chen, Mohammed J. Zaki
2012 Misc conf
SSLPred : Predicting Synthetic Sickness Lethality.
Pacific Symposium on Biocomputing
Nirmalya Bandyopadhyay, Sanjay Ranka, Tamer Kahveci
2012 — conf
SiS: Significant subnetworks in massive number of network topologies.
BIBM
Md Mahmudul Hasan, Yusuf Kavurucu, Tamer Kahveci
2012 J jnl
Topac: Alignment of gene Regulatory Networks Using Topology-Aware Coloring.
J. Bioinform. Comput. Biol.
Günhan Gülsoy, Bhavik Gandhi, Tamer Kahveci
2012 — conf
Uncertain interactions affect degree distribution of biological networks.
BIBM
Andrei Todor, Alin Dobra, Tamer Kahveci
2011 — conf
A novel framework for large scale metabolic network alignments by compression.
BCB
Michael Dang, Ferhat Ay, Tamer Kahveci
2011 — conf
Identifying differentially regulated genes.
ICCABS
Nirmalya Bandyopadhyay, Manas Somaiya, Sanjay Ranka, Tamer Kahveci
2011 J jnl
Manipulating the Steady State of Metabolic Pathways.
IEEE ACM Trans. Comput. Biol. Bioinform.
Bin Song, I. Esra Büyüktahtakin, Sanjay Ranka, Tamer Kahveci
2011 J jnl
RINQ: Reference-based Indexing for Network Queries.
Bioinform.
Günhan Gülsoy, Tamer Kahveci
2011 J jnl
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings.
J. Comput. Biol.
Ferhat Ay, Manolis Kellis, Tamer Kahveci
2011 J jnl
TRIAL: A Tool for Finding Distant Structural Similarities.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jayendra Venkateswaran, Bin Song, Tamer Kahveci, Chris Jermaine
2011 — conf
Topology aware coloring of gene regulatory networks.
BCB
Günhan Gülsoy, Bhavik Gandhi, Tamer Kahveci
2010 — conf
Enzymatic target identification with dynamic states.
BCB
Bin Song, Sanjay Ranka, Tamer Kahveci
2010 C conf
Finding Dynamic Modules of Biological Regulatory Networks.
BIBE
Ferhat Ay, Thang N. Dinh, My T. Thai, Tamer Kahveci
2010 — conf
Finding steady states of large scale regulatory networks through partitioning.
GENSiPS
Ferhat Ay, Günhan Gülsoy, Tamer Kahveci
2010 — conf
Functional similarities of reaction sets in metabolic pathways.
BCB
Ferhat Ay, Tamer Kahveci
2010 J jnl
GBA Manager: An Online Tool for Querying Low-Complexity Regions in Proteins.
J. Comput. Biol.
Nirmalya Bandyopadhyay, Tamer Kahveci
2010 — conf
RepFrag: a graph based method for finding repeats and transposons from fragmented genomes.
BCB
Nirmalya Bandyopadhyay, A. Mark Settles, Tamer Kahveci
2010 B conf
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings.
RECOMB
Ferhat Ay, Tamer Kahveci
2010 A* conf
Surrogate ranking for very expensive similarity queries.
ICDE
Fei Xu, Ravi Jampani, Mingxi Wu, Chris Jermaine, Tamer Kahveci
2009 J jnl
A Fast and Accurate Algorithm for Comparative Analysis of metabolic Pathways.
J. Bioinform. Comput. Biol.
Ferhat Ay, Tamer Kahveci, Valérie de Crécy-Lagard
2009 J jnl
Double iterative optimisation for metabolic network-based drug target identification.
Int. J. Data Min. Bioinform.
Bin Song, Padmavati Sridhar, Tamer Kahveci, Sanjay Ranka
2009 — ch.
Index Structures for Biological Sequences.
Encyclopedia of Database Systems
Tamer Kahveci
2009 J jnl
Inferring progression models for CGH data.
Bioinform.
Jun Liu, Nirmalya Bandyopadhyay, Sanjay Ranka, Michael Baudis, Tamer Kahveci
2009 J jnl
Pathway-Based Feature Selection Algorithm for Cancer Microarray Data.
Adv. Bioinformatics
Nirmalya Bandyopadhyay, Tamer Kahveci, Steve Goodison, Yijun Sun, Sanjay Ranka
2008 J jnl
A novel genome-scale repeat finder geared towards transposons.
Bioinform.
Xuehui Li, Tamer Kahveci, A. Mark Settles
2008 A conf
Classification and feature selection algorithms for multi-class CGH data.
ISMB
Jun Liu, Sanjay Ranka, Tamer Kahveci
2008 Misc conf
Mining Metabolic Networks for Optimal Drug Targets.
Pacific Symposium on Biocomputing
Padmavati Sridhar, Bin Song, Tamer Kahveci, Sanjay Ranka
2008 J jnl
Reference-based indexing for metric spaces with costly distance measures.
VLDB J.
Jayendra Venkateswaran, Tamer Kahveci, Christopher M. Jermaine, Deepak Lachwani
2007 Misc conf
An Iterative Algorithm for Metabolic Network-Based Drug Target Identification.
Pacific Symposium on Biocomputing
Padmavati Sridhar, Tamer Kahveci, Sanjay Ranka
2007 J jnl
Markers improve clustering of CGH data.
Bioinform.
Jun Liu, Sanjay Ranka, Tamer Kahveci
2007 C conf
QOMA2: Optimizing the alignment of many sequences.
BIBE
Xu Zhang, Tamer Kahveci
2007 J jnl
QOMA: quasi-optimal multiple alignment of protein sequences.
Bioinform.
Xu Zhang, Tamer Kahveci
2007 — conf
Quality-Based Similarity Search for Biological Sequence Databases.
BIOCOMP
Xuehui Li, Tamer Kahveci
2006 Misc conf
A New Approach for Alignment of Multiple Proteins.
Pacific Symposium on Biocomputing
Xu Zhang, Tamer Kahveci
2006 J jnl
A Novel algorithm for identifying low-complexity regions in a protein sequence.
Bioinform.
Xuehui Li, Tamer Kahveci
2006 J jnl
Distance-based clustering of CGH data.
Bioinform.
Jun Liu, Jaaved Mohammed, James Carter, Sanjay Ranka, Tamer Kahveci, Michael Baudis
2006 B conf
Finding Data Broadness Via Generalized Nearest Neighbors.
EDBT
Jayendra Venkateswaran, Tamer Kahveci, Orhan Çamoglu
2006 A* conf
Reference-based Indexing of Sequence Databases.
VLDB
Jayendra Venkateswaran, Deepak Lachwani, Tamer Kahveci, Christopher M. Jermaine
2005 C conf
Approximate Global Alignment of Sequences.
BIBE
Tamer Kahveci, Venkatakrishnan Ramaswamy, Han Tao, Tao Li
2005 C conf
Highly Scalable and Accurate Seeds for Subsequence Alignment.
BIBE
Abhijit Pol, Tamer Kahveci
2005 B conf
Workload Characterization of Bioinformatics Applications.
MASCOTS
Yue Li, Tao Li, Tamer Kahveci, José A. B. Fortes
2004 J jnl
Index-based Similarity Search for Protein Structure Databases.
J. Bioinform. Comput. Biol.
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh
2004 J jnl
Optimizing Similarity Search for Arbitrary Length Time Series Queries.
IEEE Trans. Knowl. Data Eng.
Tamer Kahveci, Ambuj K. Singh
2004 Misc conf
ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure.
Pacific Symposium on Biocomputing
Arnab Bhattacharya, Tolga Can, Tamer Kahveci, Ambuj K. Singh, Yuan-Fang Wang
2004 J jnl
Progressive Searching of Biological Sequences.
IEEE Data Eng. Bull.
Tamer Kahveci, Ambuj K. Singh
2004 J jnl
Speeding up whole-genome alignment by indexing frequency vectors.
Bioinform.
Tamer Kahveci, Vebjorn Ljosa, Ambuj K. Singh
2003 A* conf
Fast alignment of large genome databases.
ICDE
Tamer Kahveci, Ambuj K. Singh
2003 — conf
Genome on Demand: Interactive Substring Searching.
CSB
Tamer Kahveci, Ambuj K. Singh
2003 A* conf
Joining Massive High-Dimensional Datasets.
ICDE
Tamer Kahveci, Christian A. Lang, Ambuj K. Singh
2003 Misc conf
MAP: Searching Large Genome Databases.
Pacific Symposium on Biocomputing
Tamer Kahveci, Ambuj K. Singh
2003 — conf
PSI: indexing protein structures for fast similarity search.
ISMB (Supplement of Bioinformatics)
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh
2003 — conf
Towards Index-based Similarity Search for Protein Structure Databases.
CSB
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh
2002 A* conf
An Efficient Index Structure for Shift and Scale Invariant Search of Multi-Attribute Time Sequences.
ICDE
Tamer Kahveci, Ambuj K. Singh, Aliekber Gürel
2002 B conf
Similarity Searching for Multi-Attribute Sequences.
SSDBM
Tamer Kahveci, Ambuj K. Singh, Aliekber Gürel
2001 A* conf
Efficient Index Structures for String Databases.
VLDB
Tamer Kahveci, Ambuj K. Singh
2001 A* conf
Variable Length Queries for Time Series Data.
ICDE
Tamer Kahveci, Ambuj K. Singh