Takashi Gojobori

66 papers A 2B 1Misc 1Journal 56Unranked 6
YearRankTypeTitle / Venue / Authors
2023 J jnl
Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci.
Nat. Comput. Sci.
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky
2023 J jnl
MicroRNA networks linked with BRCA1/2, PTEN, and common genes for Alzheimer's disease and breast cancer share highly enriched pathways that may unravel targets for the AD/BC comorbidity treatment.
Comput. Biol. Chem.
Nina Petrovic, Magbubah Essack, Ahmad Sami, George Perry, Takashi Gojobori, Esma R. Isenovic, Vladan P. Bajic
2023 J jnl
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci.
Nat. Comput. Sci.
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky
2022 J jnl
DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning.
Bioinform.
Azza Althagafi, Lamia Alsubaie, Nagarajan Kathiresan, Katsuhiko Mineta, Taghrid Aloraini, Fuad Al Mutairi, Majid Alfadhel, Takashi Gojobori, Ahmad Alfares, Robert Hoehndorf
2021 J jnl
Biomedical computing in the Arab world: unlocking the potential of a growing research community.
Commun. ACM
Seif Eldawlatly, Mohamed Abouelhoda, Omar S. Al-Kadi, Takashi Gojobori, Boris R. Jankovic, Mohamad Khalil, Ahsan H. Khandoker, Ahmed Morsy
2021 J jnl
DTi2Vec: Drug-target interaction prediction using network embedding and ensemble learning.
J. Cheminformatics
Maha A. Thafar, Rawan S. Olayan, Somayah Albaradei, Vladimir B. Bajic, Takashi Gojobori, Magbubah Essack, Xin Gao
2021 J jnl
IBDDB: a manually curated and text-mining-enhanced database of genes involved in inflammatory bowel disease.
Database J. Biol. Databases Curation
Farhat Khan, Aleksandar Radovanovic, Takashi Gojobori, Mandeep Kaur
2021 J jnl
Integration of Droplet Microfluidic Tools for Single-Cell Functional Metagenomics: An Engineering Head Start.
Genom. Proteom. Bioinform.
David Conchouso, Amani D. Alma'abadi, Hayedeh Behzad, Mohammed Alarawi, Masahito Hosokawa, Yohei Nishikawa, Haruko Takeyama, Katsuhiko Mineta, Takashi Gojobori
2020 J jnl
DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques.
J. Cheminformatics
Maha A. Thafar, Rawan S. Olayan, Haitham Ashoor, Somayah Albaradei, Vladimir B. Bajic, Xin Gao, Takashi Gojobori, Magbubah Essack
2020 J jnl
SenWave: Monitoring the Global Sentiments under the COVID-19 Pandemic.
CoRR
Qiang Yang, Hind Alamro, Somayah Albaradei, Adil Salhi, Xiaoting Lv, Changsheng Ma, Manal Alshehri, Inji Jaber, Faroug Tifratene, Wei Wang, Takashi Gojobori, Carlos M. Duarte, Xin Gao, Xiangliang Zhang
2019 J jnl
In Memory of Vladimir B. Bajic (1952-2019).
Genom. Proteom. Bioinform.
Zhang Zhang, Jun Yu, Frank Eisenhaber, Xin Gao, Takashi Gojobori
2018 J jnl
Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting.
PLoS Comput. Biol.
Alyaa M. Abdel-Haleem, Hooman Hefzi, Katsuhiko Mineta, Xin Gao, Takashi Gojobori, Bernhard O. Palsson, Nathan E. Lewis, Neema Jamshidi
2018 J jnl
Maser: one-stop platform for NGS big data from analysis to visualization.
Database J. Biol. Databases Curation
Sonoko Kinjo, Norikazu Monma, Sadahiko Misu, Norikazu Kitamura, Junichi Imoto, Kazutoshi Yoshitake, Takashi Gojobori, Kazuho Ikeo
2016 J jnl
DESM: portal for microbial knowledge exploration systems.
Nucleic Acids Res.
Adil Salhi, Magbubah Essack, Aleksandar Radovanovic, Benoit Marchand, Salim Bougouffa, André Antunes, Marta Filipa Simões, Feras F. Lafi, Olaa A. Motwalli, Ameerah Bokhari, Tariq Malas, Soha Al Amoudi, Ghofran Othum, Intikhab Alam, Katsuhiko Mineta, Xin Gao, Robert Hoehndorf, John A. C. Archer, Takashi Gojobori, Vladimir B. Bajic
2015 J jnl
Marine Metagenome as A Resource for Novel Enzymes.
Genom. Proteom. Bioinform.
Amani D. Alma'abadi, Takashi Gojobori, Katsuhiko Mineta
2013 J jnl
H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.
Nucleic Acids Res.
Jun-ichi Takeda, Chisato Yamasaki, Katsuhiko Murakami, Yoko Nagai, Miho Sera, Yuichiro Hara, Nobuo Obi, Takuya Habara, Takashi Gojobori, Tadashi Imanishi
2012 J jnl
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.
Nucleic Acids Res.
Yuichi Kodama, Jun Mashima, Eli Kaminuma, Takashi Gojobori, Osamu Ogasawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura
2011 J jnl
DDBJ progress report.
Nucleic Acids Res.
Eli Kaminuma, Takehide Kosuge, Yuichi Kodama, Hideo Aono, Jun Mashima, Takashi Gojobori, Hideaki Sugawara, Osamu Ogasawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Nucleic Acids Res.
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2010 J jnl
CIG-DB: the database for human or mouse immunoglobulin and T cell receptor genes available for cancer studies.
BMC Bioinform.
Yoji Nakamura, Tomoyoshi Komiyama, Motoki Furue, Takashi Gojobori, Yasuto Akiyama
2010 J jnl
DDBJ launches a new archive database with analytical tools for next-generation sequence data.
Nucleic Acids Res.
Eli Kaminuma, Jun Mashima, Yuichi Kodama, Takashi Gojobori, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
2010 J jnl
H-DBAS: human-transcriptome database for alternative splicing: update 2010.
Nucleic Acids Res.
Jun-ichi Takeda, Yutaka Suzuki, Ryuichi Sakate, Yoshiharu Sato, Takashi Gojobori, Tadashi Imanishi, Sumio Sugano
2010 J jnl
H-InvDB in 2009: extended database and data mining resources for human genes and transcripts.
Nucleic Acids Res.
Chisato Yamasaki, Katsuhiko Murakami, Jun-ichi Takeda, Yoshiharu Sato, Akiko Ogura Noda, Ryuichi Sakate, Takuya Habara, Hajime Nakaoka, Fusano Todokoro, Akihiro Matsuya, Tadashi Imanishi, Takashi Gojobori
2009 J jnl
DDBJ dealing with mass data produced by the second generation sequencer.
Nucleic Acids Res.
Hideaki Sugawara, Kazuho Ikeo, Satoshi Fukuchi, Takashi Gojobori, Yoshio Tateno
2009 J jnl
G-compass: a web-based comparative genome browser between human and other vertebrate genomes.
Bioinform.
Yoshihiro Kawahara, Ryuichi Sakate, Akihiro Matsuya, Katsuhiko Murakami, Yoshiharu Sato, Hao Zhang, Takashi Gojobori, Takeshi Itoh, Tadashi Imanishi
2009 J jnl
Optimized ancestral state reconstruction using Sankoff parsimony.
BMC Bioinform.
José Carlos Clemente, Kazuho Ikeo, Gabriel Valiente, Takashi Gojobori
2009 J jnl
The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.
Nucleic Acids Res.
Satoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa
2009 J jnl
VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts.
Nucleic Acids Res.
Makoto K. Shimada, Ryuzou Matsumoto, Yosuke Hayakawa, Ryoko Sanbonmatsu, Craig Gough, Yumi Yamaguchi-Kabata, Chisato Yamasaki, Tadashi Imanishi, Takashi Gojobori
2008 J jnl
DDBJ with new system and face.
Nucleic Acids Res.
Hideaki Sugawara, Osamu Ogasawara, Kousaku Okubo, Takashi Gojobori, Yoshio Tateno
2008 J jnl
Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees.
Nucleic Acids Res.
Akihiro Matsuya, Ryuichi Sakate, Yoshihiro Kawahara, Kanako O. Koyanagi, Yoshiharu Sato, Yasuyuki Fujii, Chisato Yamasaki, Takuya Habara, Hajime Nakaoka, Fusano Todokoro, Kaori Yamaguchi, Toshinori Endo, Satoshi Ota, Wojciech Makalowski, Kazuho Ikeo, Yoshiyuki Suzuki, Kousuke Hanada, Katsuyuki Hashimoto, Momoki Hirai, Hisakazu Iwama, Naruya Saitou, Aiko T. Hiraki, Lihua Jin, Yayoi Kaneko, Masako Kanno, Katsuhiko Murakami, Akiko Ogura Noda, Naomi Saichi, Ryoko Sanbonmatsu, Mami Suzuki, Jun-ichi Takeda, Masayuki Tanaka, Takashi Gojobori, Tadashi Imanishi, Takeshi Itoh
2008 — conf
Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.
BioNLP
Hong-Woo Chun, Chisato Yamasaki, Naomi Saichi, Masayuki Tanaka, Teruyoshi Hishiki, Tadashi Imanishi, Takashi Gojobori, Jin-Dong Kim, Jun'ichi Tsujii, Toshihisa Takagi
2007 J jnl
DDBJ working on evaluation and classification of bacterial genes in INSDC.
Nucleic Acids Res.
Hideaki Sugawara, Takashi Abe, Takashi Gojobori, Yoshio Tateno
2007 J jnl
H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational.
Nucleic Acids Res.
Jun-ichi Takeda, Yutaka Suzuki, Mitsuteru Nakao, Tsuyoshi Kuroda, Sumio Sugano, Takashi Gojobori, Tadashi Imanishi
2006 J jnl
DDBJ in preparation for overview of research activities behind data submissions.
Nucleic Acids Res.
Kousaku Okubo, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno
2006 J jnl
TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.
Nucleic Acids Res.
Chisato Yamasaki, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori, Tadashi Imanishi
2006 J jnl
The Rice Annotation Project Database (RAP-DB): hub for
Nucleic Acids Res.
Hajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A. Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, Takuji Sasaki
2005 J jnl
A C++ computational environment for biomolecular sequence management.
Comput. Manag. Sci.
Maria Luisa Chiusano, Takashi Gojobori, Gerardo Toraldo
2005 J jnl
DDBJ in collaboration with mass-sequencing teams on annotation.
Nucleic Acids Res.
Yoshio Tateno, Naruya Saitou, Kousaku Okubo, Hideaki Sugawara, Takashi Gojobori
2005 J jnl
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.
Nucleic Acids Res.
Motohiko Tanino, Marie-Anne Debily, Takuro Tamura, Teruyoshi Hishiki, Osamu Ogasawara, Katsuji Murakawa, Shoko Kawamoto, Kouichi Itoh, Shinya Watanabe, Sandro José de Souza, Sandrine Imbeaud, Esther Graudens, Eric Eveno, Phillip Hilton, Yukio Sudo, Janet Kelso, Kazuho Ikeo, Tadashi Imanishi, Takashi Gojobori, Charles Auffray, Winston Hide, Kousaku Okubo
2004 J jnl
DBJ in the stream of various biological data.
Nucleic Acids Res.
Satoru Miyazaki, Hideaki Sugawara, Kazuho Ikeo, Takashi Gojobori, Yoshio Tateno
2003 J jnl
DNA Data Bank of Japan (DDBJ) in XML.
Nucleic Acids Res.
Satoru Miyazaki, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno
2002 J jnl
DNA Data Bank of Japan (DDBJ) for genome scale research in life science.
Nucleic Acids Res.
Yoshio Tateno, Tadashi Imanishi, Satoru Miyazaki, Kaoru Fukami-Kobayashi, Naruya Saitou, Hideaki Sugawara, Takashi Gojobori
2001 J jnl
ADAPTSITE: detecting natural selection at single amino acid sites.
Bioinform.
Yoshiyuki Suzuki, Takashi Gojobori, Masatoshi Nei
2000 J jnl
Codon usage tabulated from international DNA sequence databases: status for the year 2000.
Nucleic Acids Res.
Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura
2000 J jnl
DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams.
Nucleic Acids Res.
Yoshio Tateno, Satoru Miyazaki, Motonori Ota, Hideaki Sugawara, Takashi Gojobori
2000 B conf
Evolutionary features of genomes as disclosed by comparative analysis of complete genome sequences (abstract only).
RECOMB
Takashi Gojobori, T. Daniel Andrews, Takeshi Itoh
1999 J jnl
Codon usage tabulated from the international DNA sequence databases; its status 1999.
Nucleic Acids Res.
Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura
1999 J jnl
DNA Data Bank of Japan dealing with large-scale data submission.
Nucleic Acids Res.
Hideaki Sugawara, Satoru Miyazaki, Takashi Gojobori, Yoshio Tateno
1999 Misc conf
Topology Selection in Unrooted Molecular Phylogenetic Tree By Minimum Model-Based Complexity Method.
Pacific Symposium on Biocomputing
Hiroshi Tanaka, Fengrong Ren, Toshitsugu Okayama, Takashi Gojobori
1998 J jnl
Codon usage tabulated from the international DNA sequence databases.
Nucleic Acids Res.
Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura
1998 J jnl
DNA Data Bank of Japan at work on genome sequence data.
Nucleic Acids Res.
Yoshio Tateno, Kaoru Fukami-Kobayashi, Satoru Miyazaki, Hideaki Sugawara, Takashi Gojobori
1998 J jnl
Formal design and implementation of an improved DDBJ DNA database with a new schema and object-oriented library.
Bioinform.
Toshitsugu Okayama, Takuro Tamura, Takashi Gojobori, Yoshio Tateno, Kazuho Ikeo, Satoru Miyazaki, Kaoru Fukami-Kobayashi, Hideaki Sugawara
1998 — conf
The Application of Model-based Complexity Inference Method to Molecular Evolution Analysis.
MedInfo
Fengrong Ren, Hiroshi Tanaka, Toshitsugu Okayama, Takashi Gojobori
1998 J jnl
The non-redundant Bacillus subtilis (NRSub) database: update 1998.
Nucleic Acids Res.
Guy Perrière, Manolo Gouy, Takashi Gojobori
1997 J jnl
Codon usage tabulated from the international DNA sequence databases.
Nucleic Acids Res.
Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura
1997 J jnl
DNA Data Bank of Japan in the age of information biology.
Nucleic Acids Res.
Yoshio Tateno, Takashi Gojobori
1997 A conf
Inference of Molecular Phylogenetic Tree Based on Minimum Model-Based Complexity Method.
ISMB
Hiroshi Tanaka, Fengrong Ren, Toshitsugu Okayama, Takashi Gojobori
1997 — conf
Molecular Phylogenetic Trees are Inferred by Using Minimum Model-Based Complexity.
BCEC
Fengrong Ren, Hiroshi Tanaka, Toshitsugu Okayama, Takashi Gojobori
1997 J jnl
The NRSub database: update 1997.
Nucleic Acids Res.
Guy Perrière, Ivan Moszer, Takashi Gojobori
1996 — conf
A Biological Taxonomy Database System an World-Wide Web.
German Conference on Bioinformatics
Hajime Kitakami, Yasuma Mori, Yoshio Tateno, Takashi Gojobori
1996 J jnl
Condon usage tabulated from the international DNA sequence databases.
Nucleic Acids Res.
Yasukazu Nakamura, Ken-nosuke Wada, Yoshiko Wada, Hirofumi Doi, Shigehiko Kanaya, Takashi Gojobori, Toshimichi Ikemura
1996 J jnl
NRSub: a non-redundant database for Bacillus subtilis.
Nucleic Acids Res.
Guy Perrière, Ivan Moszer, Takashi Gojobori
1995 — conf
Molecular evolutionary phylogenetic trees based on minimum description length principle.
HICSS (5)
Fengrong Ren, Hiroshi Tanaka, Noria Fukuda, Takashi Gojobori
1995 — conf
YAMATO and ASUKA: DNA database management system.
HICSS (5)
Hajime Kitakami, Tadasu Shin-I, Kazuho Ikeo, Yoshihiro Ugawa, Naruya Saitou, Takashi Gojobori, Yoshio Tateno
1994 A conf
Toward Unification of Taxonomy Databases in a Distributed Environment.
ISMB
Hajime Kitakami, Yoshio Tateno, Takashi Gojobori