Tahsin M. Kurç

246 papers A* 4A 41B 18C 10Misc 27Journal 99Unranked 46

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	PixCell: A generative foundation model for digital histopathology images. CoRR Srikar Yellapragada, Alexandros Graikos, Zilinghan Li, Kostas Triaridis, Varun Belagali, Saarthak Kapse, Tarak Nath Nandi, Ravi K. Madduri, Prateek Prasanna, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz, Dimitris Samaras
2024	B	`conf`	Pan-Cancer Tumor Infiltrating Lymphocyte Detection based on Federated Learning. IEEE Big Data Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas
2024	A	`conf`	PathLDM: Text conditioned Latent Diffusion Model for Histopathology. WACV Srikar Yellapragada, Alexandros Graikos, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Dimitris Samaras
2024	J	`jnl`	RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency. CoRR Wentao Huang, Meilong Xu, Xiaoling Hu, Shahira Abousamra, Aniruddha Ganguly, Saarthak Kapse, Alisa Yurovsky, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Michael L. Miller, Chao Chen
2024	—	`conf`	Uncertainty Estimation for Tumor Prediction with Unlabeled Data. CVPR Workshops Juyoung Yun, Shahira Abousamra, Chen Li, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Alison L. Van Dyke, Joel H. Saltz, Chao Chen
2023	J	`jnl`	ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification. Comput. Methods Programs Biomed. Jakub R. Kaczmarzyk, Rajarsi Gupta, Tahsin M. Kurç, Shahira Abousamra, Joel H. Saltz, Peter K. Koo
2023	J	`jnl`	Effective and efficient active learning for deep learning-based tissue image analysis. Bioinform. André L. S. Meirelles, Tahsin M. Kurç, Jun Kong, Renato Ferreira, Joel H. Saltz, George Teodoro
2023	J	`jnl`	Open and reusable deep learning for pathology with WSInfer and QuPath. CoRR Jakub R. Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joel H. Saltz
2023	J	`jnl`	PathLDM: Text conditioned Latent Diffusion Model for Histopathology. CoRR Srikar Yellapragada, Alexandros Graikos, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Dimitris Samaras
2023	A*	`conf`	Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CVPR Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
2023	J	`jnl`	Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CoRR Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
2023	J	`jnl`	Understanding metric-related pitfalls in image analysis validation. CoRR Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein
2023	—	`conf`	Unsupervised Stain Decomposition via Inversion Regulation for Multiplex Immunohistochemistry Images. MIDL Shahira Abousamra, Danielle Fassler, Jiachen Yao, Rajarsi R. Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Kenneth Shroyer, Joel H. Saltz, Chao Chen
2022	J	`jnl`	A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment. CoRR Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin M. Kurç, Kenneth R. Shroyer, Joel H. Saltz
2022	J	`jnl`	AI and Pathology: Steering Treatment and Predicting Outcomes. CoRR Rajarsi Gupta, Jakub Kaczmarzyk, Soma Kobayashi, Tahsin M. Kurç, Joel H. Saltz
2022	J	`jnl`	Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes. Comput. Methods Programs Biomed. André L. S. Meirelles, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2022	J	`jnl`	Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. J. Parallel Distributed Comput. Willian Barreiros Jr., Alba C. M. A. Melo, Jun Kong, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2022	J	`jnl`	Evaluating histopathology transfer learning with ChampKit. CoRR Jakub R. Kaczmarzyk, Tahsin M. Kurç, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo
2022	J	`jnl`	Federated Learning for the Classification of Tumor Infiltrating Lymphocytes. CoRR Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas
2022	—	`conf`	Learning Topological Interactions for Multi-Class Medical Image Segmentation. ECCV (29) Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary M. Saltz, Tahsin M. Kurç, Joel H. Saltz, Apostolos Tassiopoulos, Prateek Prasanna, Chao Chen
2022	J	`jnl`	Learning Topological Interactions for Multi-Class Medical Image Segmentation. CoRR Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary M. Saltz, Tahsin M. Kurç, Joel H. Saltz, Apostolos Tassiopoulos, Prateek Prasanna, Chao Chen
2022	J	`jnl`	Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger
2021	A	`conf`	Bootstrapping in-situ workflow auto-tuning via combining performance models of component applications. SC Tong Shu, Yanfei Guo, Justin M. Wozniak, Xiaoning Ding, Ian T. Foster, Tahsin M. Kurç
2021	J	`jnl`	Building robust pathology image analyses with uncertainty quantification. Comput. Methods Programs Biomed. Jeremias M. Gomes, Jun Kong, Tahsin M. Kurç, Alba C. M. A. Melo, Renato Ferreira, Joel H. Saltz, George Teodoro
2021	J	`jnl`	Common Limitations of Image Processing Metrics: A Picture Story. CoRR Annika Reinke, Matthias Eisenmann, Minu Dietlinde Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin M. Kurç, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein
2021	Misc	`conf`	Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. AMIA Siao Sun, Fusheng Wang, Sina Rashidian, Tahsin M. Kurç, Kayley Abell-Hart, Janos G. Hajagos, Wei Zhu, Mary M. Saltz, Joel H. Saltz
2021	—	`conf`	Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. Poly/DMAH@VLDB Siao Sun, Fusheng Wang, Sina Rashidian, Tahsin M. Kurç, Kayley Abell-Hart, Janos G. Hajagos, Wei Zhu, Mary M. Saltz, Joel H. Saltz
2021	B	`conf`	In-situ workflow auto-tuning through combining component models. PPoPP Tong Shu, Yanfei Guo, Justin M. Wozniak, Xiaoning Ding, Ian T. Foster, Tahsin M. Kurç
2021	Misc	`conf`	Informatics to Power Post-COVID Care: A Framework for Patient Care and Secondary Data Use. AMIA Sritha Rajupet, Rachel Wong, Donna Moller, Lisa Maldonado, Tricia Weiss, Tahsin M. Kurç, Janos G. Hajagos, Hasit Shah, Mary M. Saltz, Joel H. Saltz, Veena Lingam
2021	A*	`conf`	Multi-Class Cell Detection Using Spatial Context Representation. ICCV Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
2021	J	`jnl`	Multi-Class Cell Detection Using Spatial Context Representation. CoRR Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
2021	B	`conf`	Understanding and Leveraging the I/O Patterns of Emerging Machine Learning Analytics. SMC Ana Gainaru, Dmitry Ganyushin, Bing Xie, Tahsin M. Kurç, Joel H. Saltz, Sarp Oral, Norbert Podhorszki, Franz Poeschel, Axel Huebl, Scott Klasky
2020	J	`jnl`	ADIOS 2: The Adaptable Input Output System. A framework for high-performance data management. SoftwareX William F. Godoy, Norbert Podhorszki, Ruonan Wang, Chuck Atkins, Greg Eisenhauer, Junmin Gu, Philip E. Davis, Jong Choi, Kai Germaschewski, Kevin A. Huck, Axel Huebl, Mark Kim, James Kress, Tahsin M. Kurç, Qing Liu, Jeremy Logan, Kshitij Mehta, George Ostrouchov, Manish Parashar, Franz Poeschel, David Pugmire, Eric Suchyta, Keichi Takahashi, Nick Thompson, Seiji Tsutsumi, Lipeng Wan, Matthew Wolf, Kesheng Wu, Scott Klasky
2020	J	`jnl`	AI in Medical Imaging Informatics: Current Challenges and Future Directions. IEEE J. Biomed. Health Informatics Andreas S. Panayides, Amir A. Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair A. Young, David J. Foran, Nhan Do, Spyretta Golemati, Tahsin M. Kurç, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis E. Zervakis, Joel H. Saltz, Constantinos S. Pattichis
2020	—	`conf`	Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer. ECCV Workshops (1) David Paredes, Prateek Prasanna, Christina Preece, Rajarsi Gupta, Farzad Fereidouni, Dimitris Samaras, Tahsin M. Kurç, Richard M. Levenson, Patricia Thompson-Carino, Joel H. Saltz, Chao Chen
2020	J	`jnl`	Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types. CoRR Le Hou, Rajarsi Gupta, John S. Van Arnam, Yuwei Zhang, Kaustubh Sivalenka, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
2020	J	`jnl`	Extending the Publish/Subscribe Abstraction for High-Performance I/O and Data Management at Extreme Scale. IEEE Data Eng. Bull. Jeremy Logan, Mark Ainsworth, Chuck Atkins, Jieyang Chen, Jong Choi, Junmin Gu, James Kress, Greg Eisenhauer, Berk Geveci, William F. Godoy, Mark Kim, Tahsin M. Kurç, Qing Liu, Kshitij Mehta, George Ostrouchov, Norbert Podhorszki, David Pugmire, Eric Suchyta, Nicholas Thompson, Ozan Tugluk, Lipeng Wan, Ruonan Wang, Ben Whitney, Matthew Wolf, Kesheng Wu, Scott Klasky
2020	J	`jnl`	In-situ Workflow Auto-tuning via Combining Performance Models of Component Applications. CoRR Tong Shu, Yanfei Guo, Justin M. Wozniak, Xiaoning Ding, Ian T. Foster, Tahsin M. Kurç
2020	J	`jnl`	Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. Concurr. Comput. Pract. Exp. Willian Barreiros Jr., Jeremias Moreira, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
2020	—	`conf`	Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images. ISBI Shahira Abousamra, Danielle Fassler, Le Hou, Yuwei Zhang, Rajarsi Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Beatrice Knudson, Kenneth Shroyer, Joel H. Saltz, Chao Chen
2019	A	`conf`	A Vision for Managing Extreme-Scale Data Hoards. ICDCS Jeremy Logan, Kshitij Mehta, Gerd Heber, Scott Klasky, Tahsin M. Kurç, Norbert Podhorszki, Patrick M. Widener, Matthew Wolf
2019	—	`conf`	From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology of Cancer. BrainLes@MICCAI (2) Tahsin M. Kurç, Ashish Sharma, Rajarsi Gupta, Le Hou, Han Le, Shahira Abousamra, Erich Bremer, Ryan Birmingham, Tammy DiPrima, Nan Li, Feiqiao Wang, Joseph Balsamo, Whitney Bremer, Dimitris Samaras, Joel H. Saltz
2019	—	`conf`	Increasing Accuracy of Medical CNN Applying Optimization Algorithms: An Image Classification Case. BRACIS Rafael Marconi Ramos, Célia Ghedini Ralha, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Label Super Resolution with Inter-Instance Loss. CoRR Maozheng Zhao, Le Hou, Han Le, Dimitris Samaras, Nebojsa Jojic, Danielle Fassler, Tahsin M. Kurç, Rajarsi R. Gupta, Kolya Malkin, Shahira Abousamra, Kenneth Shroyer, Joel H. Saltz
2019	J	`jnl`	Learning from Thresholds: Fully Automated Classification of Tumor Infiltrating Lymphocytes for Multiple Cancer Types. CoRR Shahira Abousamra, Le Hou, Rajarsi R. Gupta, Chao Chen, Dimitris Samaras, Tahsin M. Kurç, Rebecca Batiste, Tianhao Zhao, Kenneth Shroyer, Joel H. Saltz
2019	J	`jnl`	MPI jobs within MPI jobs: A practical way of enabling task-level fault-tolerance in HPC workflows. Future Gener. Comput. Syst. Justin M. Wozniak, Matthieu Dorier, Robert B. Ross, Tong Shu, Tahsin M. Kurç, Li Tang, Norbert Podhorszki, Matthew Wolf
2019	J	`jnl`	Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. J. Digit. Imaging Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
2019	—	`conf`	Pancreatic Cancer Detection in Whole Slide Images Using Noisy Label Annotations. MICCAI (1) Han Le, Dimitris Samaras, Tahsin M. Kurç, Rajarsi Gupta, Kenneth Shroyer, Joel H. Saltz
2019	A*	`conf`	Robust Histopathology Image Analysis: To Label or to Synthesize? CVPR Le Hou, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz
2019	J	`jnl`	Run-time Parameter Sensitivity Analysis Optimizations. CoRR Eduardo Scartezini, Willian Barreiros Jr., Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. Comput. Biol. Medicine Jeremias M. Gomes, Willian Barreiros Jr., Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. Pattern Recognit. Le Hou, Vu Nguyen, Ariel B. Kanevsky, Dimitris Samaras, Tahsin M. Kurç, Tianhao Zhao, Rajarsi R. Gupta, Yi Gao, Wenjin Chen, David J. Foran, Joel H. Saltz
2019	J	`jnl`	Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer. CoRR Han Le, Rajarsi R. Gupta, Le Hou, Shahira Abousamra, Danielle Fassler, Tahsin M. Kurç, Dimitris Samaras, Rebecca Batiste, Tianhao Zhao, Alison L. Van Dyke, Ashish Sharma, Erich Bremer, Jonas S. Almeida, Joel H. Saltz
2018	A	`conf`	A View from ORNL: Scientific Data Research Opportunities in the Big Data Age. ICDCS Scott Klasky, Matthew Wolf, Mark Ainsworth, Chuck Atkins, Jong Choi, Greg Eisenhauer, Berk Geveci, William F. Godoy, Mark Kim, James Kress, Tahsin M. Kurç, Qing Liu, Jeremy Logan, Arthur B. Maccabe, Kshitij Mehta, George Ostrouchov, Manish Parashar, Norbert Podhorszki, David Pugmire, Eric Suchyta, Lipeng Wan, Ruonan Wang
2018	J	`jnl`	Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. Concurr. Comput. Pract. Exp. Jeremias M. Gomes, Alba Cristina Magalhaes Alves de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2018	J	`jnl`	Methods for Segmentation and Classification of Digital Microscopy Tissue Images. CoRR Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin M. Kurç, Keyvan Farahani, Tianhao Zhao, Rajarsi R. Gupta, Jin Tae Kwak, Nasir M. Rajpoot, Joel H. Saltz
2018	Misc	`conf`	Systems Demonstration: Towards a Services Oriented Platform for Combined Radiology-Pathology Image Analysis and Interpretation. AMIA Tahsin M. Kurç, Joel H. Saltz, Fred W. Prior, Ashish Sharma
2018	J	`jnl`	Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. CoRR Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
2017	Misc	`conf`	20 Years of Digital Pathology - An Overview of the Road Travelled and What is on the Horizon. AMIA Joel H. Saltz, Ashish Sharma, Alexis B. Carter, Liron Pantanowitz, Tahsin M. Kurç
2017	J	`jnl`	Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines. Bioinform. George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Yi Gao
2017	J	`jnl`	Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis. Int. J. High Perform. Comput. Appl. George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz
2017	A	`conf`	Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. WACV Veda Murthy, Le Hou, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
2017	—	`conf`	Computing Just What You Need: Online Data Analysis and Reduction at Extreme Scales. Euro-Par Ian T. Foster, Mark Ainsworth, Bryce Allen, Julie Bessac, Franck Cappello, Jong Youl Choi, Emil M. Constantinescu, Philip E. Davis, Sheng Di, Zichao Wendy Di, Hanqi Guo, Scott Klasky, Kerstin Kleese van Dam, Tahsin M. Kurç, Qing Liu, Abid Malik, Kshitij Mehta, Klaus Mueller, Todd S. Munson, George Ostrouchov, Manish Parashar, Tom Peterka, Line Pouchard, Dingwen Tao, Ozan Tugluk, Stefan M. Wild, Matthew Wolf, Justin M. Wozniak, Wei Xu, Shinjae Yoo
2017	A	`conf`	ConvNets with Smooth Adaptive Activation Functions for Regression. AISTATS Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz
2017	—	`conf`	Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. Digital Pathology Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz, Yi Gao
2017	C	`conf`	Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. CLUSTER Willian Barreiros, George Teodoro, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz
2017	—	`conf`	SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing. SIGSPATIAL/GIS Furqan Baig, Hoang Vo, Tahsin M. Kurç, Joel H. Saltz, Fusheng Wang
2017	J	`jnl`	Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images. CoRR Le Hou, Vu Nguyen, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Tianhao Zhao, Joel H. Saltz
2017	Misc	`conf`	StoreRush: An Application-Level Approach to Harvesting Idle Storage in a Best Effort Environment. ICCS Qing Liu, Norbert Podhorszki, Jong Youl Choi, Jeremy Logan, Matthew Wolf, Scott Klasky, Tahsin M. Kurç, Xubin He
2017	C	`conf`	TGE: Machine Learning Based Task Graph Embedding for Large-Scale Topology Mapping. CLUSTER Jong Youl Choi, Jeremy Logan, Matthew Wolf, George Ostrouchov, Tahsin M. Kurç, Qing Liu, Norbert Podhorszki, Scott Klasky, Melissa Romanus, Qian Sun, Manish Parashar, Randy Michael Churchill, Choong-Seock Chang
2017	J	`jnl`	Unsupervised Histopathology Image Synthesis. CoRR Le Hou, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz
2016	J	`jnl`	Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. CoRR Veda Murthy, Le Hou, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
2016	J	`jnl`	Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. CoRR George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz
2016	—	`conf`	Hierarchical nucleus segmentation in digital pathology images. Digital Pathology Yi Gao, Vadim Ratner, LiangJia Zhu, Tammy DiPrima, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz
2016	—	`conf`	Multi-scale learning based segmentation of glands in digital colonrectal pathology images. Digital Pathology Yi Gao, William Liu, Shipra Arjun, LiangJia Zhu, Vadim Ratner, Tahsin M. Kurç, Joel H. Saltz, Allen R. Tannenbaum
2016	J	`jnl`	Neural Networks with Smooth Adaptive Activation Functions for Regression. CoRR Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz
2016	Misc	`conf`	POE: A Pathology Extraction Tool for Finding Attribute-Value Pairs in Glioma Pathology Reports. AMIA Veronica E. Lynn, Niranjan Balasubramanian, Tahsin M. Kurç, Joel H. Saltz, Rebecca Jacobson
2016	A*	`conf`	Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification. CVPR Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz
2016	Misc	`conf`	Safe "cloudification" of large images through picker APIs. AMIA Erich Bremer, Tahsin M. Kurç, Yi Gao, Joel H. Saltz, Jonas S. Almeida
2016	—	`conf`	Visualization and Analysis for Near-Real-Time Decision Making in Distributed Workflows. IPDPS Workshops David Pugmire, James Kress, Jong Youl Choi, Scott Klasky, Tahsin M. Kurç, Michael Churchill, Matthew Wolf, Greg Eisenhauer, Hank Childs, Kesheng Wu, Alexander Sim, Junmin Gu, Jonathan Low
2015	C	`conf`	Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM). SBAC-PAD Jeremias M. Gomes, George Teodoro, Alba de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz
2015	J	`jnl`	Efficient Multiple Instance Convolutional Neural Networks for Gigapixel Resolution Image Classification. CoRR Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz
2015	Misc	`conf`	Integrative Informatics and Predictive Modeling Support for Population Health. AMIA Mary M. Saltz, Joel H. Saltz, Janos G. Hajagos, Andrew White, Charles Boicey, Jim Murry, Ivan Crnosija, Tahsin M. Kurç, Erich Bremer, Jonas S. Almeida
2015	Misc	`conf`	OpenHealth Platform for Interactive Contextualization of Population Health Open Data. AMIA Jonas S. Almeida, Janos G. Hajagos, Ivan Crnosija, Tahsin M. Kurç, Mary M. Saltz, Joel H. Saltz
2015	J	`jnl`	Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs. CoRR George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz
2015	J	`jnl`	Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinform. Tahsin M. Kurç, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee Cooper, Michael Nalisnik, Lin Yang, Joel H. Saltz, David J. Foran
2015	—	`conf`	SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies. Big-O(Q)/DMAH@VLDB Furqan Baig, Mudit Mehrotra, Hoang Vo, Fusheng Wang, Joel H. Saltz, Tahsin M. Kurç
2014	A	`conf`	Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis. IPDPS George Teodoro, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2014	C	`conf`	Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems. SBAC-PAD Guilherme Andrade, Renato Ferreira, George Teodoro, Leonardo Rocha, Joel H. Saltz, Tahsin M. Kurç
2014	J	`jnl`	Parallel content-based sub-image retrieval using hierarchical searching. Bioinform. Lin Yang, Xin Qi, Fuyong Xing, Tahsin M. Kurç, Joel H. Saltz, David J. Foran
2014	J	`jnl`	Region Templates: Data Representation and Management for Large-Scale Image Analysis. CoRR George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz
2014	J	`jnl`	Region templates: Data representation and management for high-throughput image analysis. Parallel Comput. George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz
2013	Misc	`conf`	Clinical Phenotyping with the Analytic Information Warehouse. AMIA Andrew R. Post, Tahsin M. Kurç, Richie Willard, Himanshu Rathod, Michel Mansour, Akshatha Kalsanka Pai, William M. Torian, Sanjay Agravat, Suzanne Sturm, Joel H. Saltz
2013	J	`jnl`	Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU. CoRR George Teodoro, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2013	J	`jnl`	Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. Parallel Comput. George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz
2013	J	`jnl`	Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures. Int. J. High Perform. Comput. Appl. Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, Scott Klasky, Tahsin M. Kurç
2013	—	`conf`	High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. BIBM Jun Kong, Fusheng Wang, George Teodoro, Lee Cooper, Carlos Sanchez Moreno, Tahsin M. Kurç, Tony Pan, Joel H. Saltz, Daniel J. Brat
2013	A	`conf`	High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms. IPDPS George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz
2013	J	`jnl`	Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data. J. Am. Medical Informatics Assoc. David A. Gutman, Jake Cobb, Dhananjaya Somanna, Yuna Park, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat, Lee A. D. Cooper
2013	J	`jnl`	Semantically Interoperable XML Data. Int. J. Semantic Comput. Cristobal Vergara-Niedermayr, Fusheng Wang, Tony Pan, Tahsin M. Kurç, Joel H. Saltz
2013	Misc	`conf`	Temporal Abstraction-based Clinical Phenotyping with Eureka! AMIA Andrew R. Post, Tahsin M. Kurç, Richie Willard, Himanshu Rathod, Michel Mansour, Akshatha Kalsanka Pai, William M. Torian, Sanjay Agravat, Suzanne Sturm, Joel H. Saltz
2013	J	`jnl`	The Analytic Information Warehouse (AIW): A platform for analytics using electronic health record data. J. Biomed. Informatics Andrew R. Post, Tahsin M. Kurç, Sharath R. Cholleti, Jingjing Gao, Xia Lin, William Bornstein, Dedra Cantrell, David Levine, Sam Hohmann, Joel H. Saltz
2012	A	`conf`	Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. IPDPS George Teodoro, Tahsin M. Kurç, Tony Pan, Lee A. D. Cooper, Jun Kong, Patrick M. Widener, Joel H. Saltz
2012	J	`jnl`	Digital Pathology: Data-Intensive Frontier in Medical Imaging. Proc. IEEE Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2012	J	`jnl`	Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines CoRR George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2012	A	`conf`	Efficient regression testing of ontology-driven systems. ISSTA Mijung Kim, Jake Cobb, Mary Jean Harrold, Tahsin M. Kurç, Alessandro Orso, Joel H. Saltz, Andrew R. Post, Kunal Malhotra, Shamkant B. Navathe
2012	Misc	`conf`	High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. AMIA Tahsin M. Kurç, Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, David A. Gutman, Daniel J. Brat, Fusheng Wang
2012	J	`jnl`	High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms CoRR George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz
2012	J	`jnl`	Integrated morphologic analysis for the identification and characterization of disease subtypes. J. Am. Medical Informatics Assoc. Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2012	Misc	`conf`	Systematic Modeling, Testing, and Monitoring of Information Integrity in Federated Ontology-driven Data Sources. AMIA Mijung Kim, Jake Cobb, Tahsin M. Kurç, Alessandro Orso, Mary Jean Harrold, Andrew R. Post, Shamkant B. Navathe, Joel H. Saltz
2011	—	`conf`	A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas. ISBI Jun Kong, Lee Cooper, Fusheng Wang, Candace Chisolm, Carlos Sanchez Moreno, Tahsin M. Kurç, Patrick M. Widener, Daniel J. Brat, Joel H. Saltz
2011	B	`conf`	A new steerable pressure force for parametric deformable models. Image Processing Jun Kong, Lee Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2011	—	`conf`	Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization Policies. BIBM Apurva Mohan, Douglas M. Blough, Tahsin M. Kurç, Andrew R. Post, Joel H. Saltz
2011	J	`jnl`	ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J. Am. Medical Informatics Assoc. David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz
2011	—	`conf`	In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response. EMBC Jun Kong, Lee Cooper, Carlos Sanchez Moreno, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat
2011	J	`jnl`	Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. IEEE Trans. Biomed. Eng. Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Joel H. Saltz, Daniel J. Brat
2011	—	`conf`	Morphological signatures and genomic correlates in glioblastoma. ISBI Lee A. D. Cooper, Jun Kong, Fusheng Wang, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2011	J	`jnl`	Optimizing latency and throughput of application workflows on clusters. Parallel Comput. Naga Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, Ponnuswamy Sadayappan, Joel H. Saltz
2011	—	`conf`	Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma. EMBC Jun Kong, Lee Cooper, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2010	J	`jnl`	An Integrative Approach for In Silico Glioma Research. IEEE Trans. Biomed. Eng. Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2010	—	`conf`	High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran
2010	—	`conf`	High-Performance Systems for in Silico Microscopy Imaging Studies. DILS Fusheng Wang, Tahsin M. Kurç, Patrick M. Widener, Tony Pan, Jun Kong, Lee Cooper, David A. Gutman, Ashish Sharma, Sharath R. Cholleti, Vijay Kumar
2010	J	`jnl`	Parameterized specification, configuration and execution of data-intensive scientific workflows. Clust. Comput. Vijay S. Kumar, Tahsin M. Kurç, Varun Ratnakar, Jihie Kim, Gaurang Mehta, Karan Vahi, Yoon-Ju Lee Nelson, P. Sadayappan, Ewa Deelman, Yolanda Gil, Mary W. Hall, Joel H. Saltz
2010	Misc	`conf`	Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism. ICASSP Jun Kong, Lee Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2009	—	`conf`	A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens. ISBI David J. Foran, Lin Yang, Oncel Tuzel, Wenjin Chen, Jun Hu, Tahsin M. Kurç, Renato Ferreira, Joel H. Saltz
2009	J	`jnl`	An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications. IEEE Trans. Parallel Distributed Syst. Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald M. Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2009	A	`conf`	An integrated framework for performance-based optimization of scientific workflows. HPDC Vijay S. Kumar, P. Sadayappan, Gaurang Mehta, Karan Vahi, Ewa Deelman, Varun Ratnakar, Jihie Kim, Yolanda Gil, Mary W. Hall, Tahsin M. Kurç, Joel H. Saltz
2009	A	`conf`	Architectural implications for spatial object association algorithms. IPDPS Vijay S. Kumar, Tahsin M. Kurç, Joel H. Saltz, Ghaleb Abdulla, Scott R. Kohn, Celeste Matarazzo
2009	—	`conf`	Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. BIBM Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç
2009	J	`jnl`	HPC and Grid Computing for Integrative Biomedical Research. Int. J. High Perform. Comput. Appl. Tahsin M. Kurç, Shannon Hastings, Vijay S. Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Ervin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman, Mary W. Hall, Joel H. Saltz
2009	Misc	`conf`	Parallel materialization of large ABoxes. SAC Sivaramakrishnan Narayanan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz
2009	J	`jnl`	VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid. J. Digit. Imaging Ashish Sharma, Tony Pan, Berkant Barla Cambazoglu, Metin N. Gurcan, Tahsin M. Kurç, Joel H. Saltz
2008	B	`conf`	A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows. ICPP Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2008	—	`conf`	A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. HealthGrid Joel H. Saltz, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Philip R. O. Payne, Renato Ferreira, Beth Plale, Carole A. Goble, David Ervin, Ashish Sharma, Tony Pan, Justin Permar, Peter Brezany, Frank Siebenlist, Ravi K. Madduri, Ian T. Foster, Krishnakant Shanbhag, Charlie Mead, Neil P. Chue Hong
2008	J	`jnl`	A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. Int. J. Parallel Program. George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz
2008	A	`conf`	A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP. IPDPS Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, Rajkumar Kettimuthu, P. Sadayappan, Joel H. Saltz
2008	J	`jnl`	An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. J. Biomed. Informatics Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang
2008	J	`jnl`	Analysis and Semantic Querying in Large Biomedical Image Datasets. Computer Vijay S. Kumar, Sivaramakrishnan Narayanan, Tahsin M. Kurç, Jun Kong, Metin N. Gurcan, Joel H. Saltz
2008	A	`conf`	Designing and parameterizing a workflow for optimization: A case study in biomedical imaging. IPDPS Vijay S. Kumar, Mary W. Hall, Jihie Kim, Yolanda Gil, Tahsin M. Kurç, Ewa Deelman, Varun Ratnakar, Joel H. Saltz
2008	J	`jnl`	Large-Scale Biomedical Image Analysis in Grid Environments. IEEE Trans. Inf. Technol. Biomed. Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Tony C. Pan, Sunny K. Chow, Stephan Lamont, Maryann E. Martone, Joel H. Saltz
2008	J	`jnl`	Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment. J. Am. Medical Informatics Assoc. Stephen Langella, Shannon Hastings, Scott Oster, Tony Pan, Ashish Sharma, Justin Permar, David Ervin, Berkant Barla Cambazoglu, Tahsin M. Kurç, Joel H. Saltz
2008	J	`jnl`	Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research. J. Am. Medical Informatics Assoc. Scott Oster, Stephen Langella, Shannon Hastings, David Ervin, Ravi K. Madduri, Joshua Phillips, Tahsin M. Kurç, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian T. Foster, Joel H. Saltz
2008	A	`conf`	Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP. HPDC Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz, Rajkumar Kettimuthu, Ian T. Foster
2008	A	`conf`	Translational research design templates, Grid computing, and HPC. IPDPS Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Renato Ferreira, Justin Permar, Ashish Sharma, David Ervin, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç
2008	A	`conf`	Using overlays for efficient data transfer over shared wide-area networks. SC Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, Rajkumar Kettimuthu, P. Sadayappan, Ian T. Foster, Joel H. Saltz
2008	J	`jnl`	e-Science, caGrid, and Translational Biomedical Research. Computer Joel H. Saltz, Tahsin M. Kurç, Shannon Hastings, Stephen Langella, Scott Oster, David Ervin, Ashish Sharma, Tony Pan, Metin N. Gurcan, Justin Permar, Renato Ferreira, Philip R. O. Payne, Ümit V. Çatalyürek, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Ravi K. Madduri, Ian T. Foster, Subhasree Madhavan, Kenneth H. Buetow, Krishnakant Shanbhag, Eliot L. Siegel
2007	J	`jnl`	Active semantic caching to optimize multidimensional data analysis in parallel and distributed environments. Parallel Comput. Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2007	J	`jnl`	Adaptive decomposition and remapping algorithms for object-space-parallel direct volume rendering of unstructured grids. J. Parallel Distributed Comput. Cevdet Aykanat, Berkant Barla Cambazoglu, Ferit Findik, Tahsin M. Kurç
2007	B	`conf`	An Efficient and Reliable Scientific Workflow System. CCGRID Tulio Tavares, George Teodoro, Tahsin M. Kurç, Renato Ferreira, Dorgival Olavo Guedes Neto, Wagner Meira Jr., Ümit V. Çatalyürek, Shannon Hastings, Scott Oster, Stephen Langella, Joel H. Saltz
2007	Misc	`conf`	Dynamic Data-Driven Systems Approach for Simulation Based Optimizations. International Conference on Computational Science (1) Tahsin M. Kurç, Xi Zhang, Manish Parashar, Hector Klie, Mary F. Wheeler, Ümit V. Çatalyürek, Joel H. Saltz
2007	J	`jnl`	GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support. J. Digit. Imaging Metin N. Gurcan, Tony Pan, Ashish Sharma, Tahsin M. Kurç, Scott Oster, Stephen Langella, Shannon Hastings, Khan M. Siddiqui, Eliot L. Siegel, Joel H. Saltz
2007	A	`conf`	Intelligent Optimization of Parallel and Distributed Applications. IPDPS Bhupesh Bansal, Ümit V. Çatalyürek, Jacqueline Chame, Chun Chen, Ewa Deelman, Yolanda Gil, Mary W. Hall, Vijay S. Kumar, Tahsin M. Kurç, Kristina Lerman, Aiichiro Nakano, Yoon-Ju Lee Nelson, Joel H. Saltz, Ashish Sharma, Priya Vashishta
2007	J	`jnl`	Introduce: An Open Source Toolkit for Rapid Development of Strongly Typed Grid Services. J. Grid Comput. Shannon Hastings, Scott Oster, Stephen Langella, David Ervin, Tahsin M. Kurç, Joel H. Saltz
2007	A	`conf`	Knowledge and Cache Conscious Algorithm Design and Systems Support for Data Mining Algorithms. IPDPS Amol Ghoting, Gregory Buehrer, Matthew Goyder, Shirish Tatikonda, Xi Zhang, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz
2007	—	`conf`	Optimizing multiple queries on scientific datasets with partial replicas. GRID Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz
2007	J	`jnl`	Parallel four-dimensional Haralick texture analysis for disk-resident image datasets. Concurr. Comput. Pract. Exp. Brent Woods, Bradley D. Clymer, Johannes T. Heverhagen, Michael V. Knopp, Joel H. Saltz, Tahsin M. Kurç
2007	C	`conf`	Performance vs. accuracy trade-offs for large-scale image analysis applications. CLUSTER Vijay S. Kumar, Tahsin M. Kurç, Jun Kong, Ümit V. Çatalyürek, Metin N. Gurcan, Joel H. Saltz
2007	—	`conf`	Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters. Euro-Par Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2007	Misc	`conf`	The Cancer Biomedical Informatics Grid (caBIG AMIA Stephen Langella, Scott Oster, Shannon Hastings, Frank Siebenlist, Joshua Phillips, David Ervin, Justin Permar, Tahsin M. Kurç, Joel H. Saltz
2007	—	`conf`	Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters. Euro-Par Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2007	B	`conf`	Toward terabyte pattern mining: an architecture-conscious solution. PPoPP Gregory Buehrer, Srinivasan Parthasarathy, Shirish Tatikonda, Tahsin M. Kurç, Joel H. Saltz
2007	Misc	`conf`	caGrid 1.0: A Grid Enterprise Architecture for Cancer Research. AMIA Scott Oster, Stephen Langella, Shannon Hastings, David Ervin, Ravi K. Madduri, Tahsin M. Kurç, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian T. Foster, Joel H. Saltz
2006	C	`conf`	A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing. JSSPP Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2006	C	`conf`	A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. SBAC-PAD George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz
2006	B	`conf`	An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications. ICPP Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2006	J	`jnl`	Application of Information Technology: An XML-based System for Synthesis of Data from Disparate Databases. J. Am. Medical Informatics Assoc. Tahsin M. Kurç, Daniel Janies, Andrew D. Johnson, Stephen Langella, Scott Oster, Shannon Hastings, Farhat Habib, Terry Camerlengo, David Ervin, Ümit V. Çatalyürek, Joel H. Saltz
2006	A	`conf`	Design and analysis of a multi-dimensional data sampling service for large scale data analysis applications. IPDPS Xi Zhang, Tahsin M. Kurç, Joel H. Saltz, Srinivasan Parthasarathy
2006	B	`conf`	Dorian: Grid Service Infrastructure for Identity Management and Federation. CBMS Stephen Langella, Scott Oster, Shannon Hastings, Frank Siebenlist, Tahsin M. Kurç, Joel H. Saltz
2006	A	`conf`	I/O conscious algorithm design and systems support for data analysis on emerging architectures. IPDPS Gregory Buehrer, Amol Ghoting, Xi Zhang, Shirish Tatikonda, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz
2006	A	`conf`	Imaging and visual analysis - Large image correction and warping in a cluster environment. SC Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Sunny K. Chow, Stephan Lamont, Maryann E. Martone
2006	C	`conf`	Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications. CLUSTER Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2006	J	`jnl`	Models, methods and middleware for grid-enabled multiphysics oil reservoir management. Eng. Comput. Hector Klie, Wolfgang Bangerth, X. Gai, Mary F. Wheeler, Paul L. Stoffa, Mrinal K. Sen, Manish Parashar, Ümit V. Çatalyürek, Joel H. Saltz, Tahsin M. Kurç
2006	B	`conf`	On Creating Efficient Object-relational Views of Scientific Datasets. ICPP Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz
2006	Misc	`conf`	Service-Based Access to and Processing of Large Scientific Datasets. High Performance Computing Workshop Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Olcay Sertel, Jun Kong, Berkant Barla Cambazoglu, Tony Pan, Ashish Sharma, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Metin Nafi Gürcan, Joel H. Saltz
2006	J	`jnl`	Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis. Int. J. High Perform. Comput. Appl. Xi Zhang, Benjamin Rutt, Ümit V. Çatalyürek, Tahsin M. Kurç, Paul L. Stoffa, Mrinal K. Sen, Joel H. Saltz
2006	A	`conf`	TRIPS and TIDES: new algorithms for tree mining. CIKM Shirish Tatikonda, Srinivasan Parthasarathy, Tahsin M. Kurç
2006	A	`conf`	Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O. HPDC Gaurav Khanna, Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, Sriram Krishnamoorthy, P. Sadayappan, Joel H. Saltz
2006	Misc	`conf`	Towards Dynamic Data-Driven Management of the Ruby Gulch Waste Repository. International Conference on Computational Science (3) Manish Parashar, Vincent Matossian, Hector Klie, Sunil G. Thomas, Mary F. Wheeler, Tahsin M. Kurç, Joel H. Saltz, Roelof Versteeg
2006	B	`conf`	Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries. ICPP Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz
2006	J	`jnl`	caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. Bioinform. Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Tahsin M. Kurç, William Sanchez, Manav Kher, Arumani Manisundaram, Krishnakant Shanbhag, Peter A. Covitz
2005	A	`conf`	A Services Oriented Framework for Next Generation Data Analysis Centers. IPDPS Huai Wang, Amol Ghoting, Gregory Buehrer, Shirish Tatikonda, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz
2005	B	`conf`	A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O. CCGRID Gaurav Khanna, Nagavijayalakshmi Vydyanathan, Tahsin M. Kurç, Ümit V. Çatalyürek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan
2005	J	`jnl`	A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies. Concurr. Pract. Exp. Tahsin M. Kurç, Ümit V. Çatalyürek, Xi Zhang, Joel H. Saltz, Ryan Martino, Mary F. Wheeler, Malgorzata Peszynska, Alan Sussman, Christian Hansen, Mrinal K. Sen, Roustam Seifoullaev, Paul L. Stoffa, Carlos Torres-Verdín, Manish Parashar
2005	J	`jnl`	Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies. Future Gener. Comput. Syst. Manish Parashar, Hector Klie, Ümit V. Çatalyürek, Tahsin M. Kurç, Wolfgang Bangerth, Vincent Matossian, Joel H. Saltz, Mary F. Wheeler
2005	J	`jnl`	Application of Information Technology: A Grid-Based Image Archival and Analysis System. J. Am. Medical Informatics Assoc. Shannon Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Joel H. Saltz
2005	A	`conf`	Design of a next generation sampling service for large scale data analysis applications. ICS Huai Wang, Srinivasan Parthasarathy, Amol Ghoting, Shirish Tatikonda, Gregory Buehrer, Tahsin M. Kurç, Joel H. Saltz
2005	C	`conf`	Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying. CLUSTER Benjamin Rutt, Vijay S. Kumar, Tony Pan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Yujun Wang
2005	Misc	`conf`	Grid-based management of biomedical data using an XML-based distributed data management system. SAC Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Daniel Janies, Joel H. Saltz
2005	—	`conf`	Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services. DMG Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz
2005	B	`conf`	Servicing range queries on multidimensional datasets with partial replicas. CCGRID Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz
2005	—	`conf`	Supporting Large Scale Medical and Scientific Datasets. PARCO Ümit V. Çatalyürek, Shannon Hastings, Kun Huang, Vijay S. Kumar, Tahsin M. Kurç, Stephen Langella, Sivaramakrishnan Narayanan, Scott Oster, Tony Pan, Benjamin Rutt, Xi Zhang, Joel H. Saltz
2005	Misc	`conf`	Towards Dynamic Data-Driven Optimization of Oil Well Placement. International Conference on Computational Science (2) Manish Parashar, Vincent Matossian, Wolfgang Bangerth, Hector Klie, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Mary F. Wheeler
2005	J	`jnl`	XML database support for distributed execution of data-intensive scientific workflows. SIGMOD Rec. Shannon Hastings, Matheus Ribeiro, Stephen Langella, Scott Oster, Ümit V. Çatalyürek, Tony Pan, Kun Huang, Renato Ferreira, Joel H. Saltz, Tahsin M. Kurç
2004	A	`conf`	A Parallel Implementation of 4-Dimensional Haralick Texture Analysis for Disk-Resident Image Datasets. SC Brent Woods, Bradley D. Clymer, Joel H. Saltz, Tahsin M. Kurç
2004	C	`conf`	A distributed data management middleware for data-driven application systems. CLUSTER Stephen Langella, Shannon Hastings, Scott Oster, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz
2004	A	`conf`	An Approach for Automatic Data Virtualization. HPDC Li Weng, Gagan Agrawal, Ümit V. Çatalyürek, Tahsin M. Kurç, Sivaramakrishnan Narayanan, Joel H. Saltz
2004	Misc	`conf`	Application of Grid-Enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies. International Conference on Computational Science Manish Parashar, Hector Klie, Ümit V. Çatalyürek, Tahsin M. Kurç, Vincent Matossian, Joel H. Saltz, Mary F. Wheeler
2004	J	`jnl`	Optimizing the Execution of Multiple Data Analysis Queries on Parallel and Distributed Environments. IEEE Trans. Parallel Distributed Syst. Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2004	B	`conf`	Serving queries to multi-resolution datasets on disk-based storage clusters. CCGRID Xi Zhang, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz
2004	A	`conf`	Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms. HPDC Xi Zhang, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz
2004	Misc	`conf`	Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data. High Performance Computing Workshop Matheus Ribeiro, Tahsin M. Kurç, Tony Pan, Kun Huang, Ümit V. Çatalyürek, Xi Zhang, Stephen Langella, Shannon Hastings, Scott Oster, Renato Ferreira, Joel H. Saltz
2004	—	`conf`	Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O. GRID Nagavijayalakshmi Vydyanathan, Gaurav Khanna, Tahsin M. Kurç, Ümit V. Çatalyürek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan
2003	Misc	`conf`	A Component-based Implementation of Multiple Sequence Alignment. SAC Ümit V. Çatalyürek, Mike Gray, Tahsin M. Kurç, Joel H. Saltz, Eric Stahlberg, Renato Ferreira
2003	B	`conf`	A Slacker Coherence rotocol for Pull-based Monitoring of On-line Data Source. CCGRID Radhakrishnan Sundaresan, Tahsin M. Kurç, Mario Lauria, Srinivasan Parthasarathy, Joel H. Saltz
2003	A	`conf`	Adaptive Polling of Grid Resource Monitors Using a Slacker Coherence Model. HPDC Radhakrishnan Sundaresan, Mario Lauria, Tahsin M. Kurç, Srinivasan Parthasarathy, Joel H. Saltz
2003	—	`conf`	Applying Database Support for Large Scale Data Driven Science in Distributed Environments. GRID Sivaramakrishnan Narayanan, Ümit V. Çatalyürek, Tahsin M. Kurç, Xi Zhang, Joel H. Saltz
2003	J	`jnl`	Database Support for Data-Driven Scientific Applications in the Grid. Parallel Process. Lett. Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz
2003	Misc	`conf`	Driving Scientific Applications by Data in Distributed Environments. International Conference on Computational Science Joel H. Saltz, Ümit V. Çatalyürek, Tahsin M. Kurç, Mike Gray, Shannon Hastings, Stephen Langella, Sivaramakrishnan Narayanan, Ryan Martino, Steven Bryant, Malgorzata Peszynska, Mary F. Wheeler, Alan Sussman, Michael D. Beynon, Christian Hansen, Don Stredney, Dennis Sessanna
2003	—	`conf`	Efficient Execution of Multi-query Data Analysis Batches Using Compiler Optimization Strategies. LCPC Henrique Andrade, Suresh Aryangat, Tahsin M. Kurç, Joel H. Saltz, Alan Sussman
2003	A	`conf`	Exploiting Functional Decomposition for Efficient Parallel Processing of Multiple Data Analysis Queries. IPDPS Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2003	B	`conf`	Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications. CCGRID Shannon Hastings, Tahsin M. Kurç, Stephen Langella, Ümit V. Çatalyürek, Tony Pan, Joel H. Saltz
2003	A	`conf`	Impact of High Performance Sockets on Data Intensive Applications. HPDC Pavan Balaji, Jiesheng Wu, Tahsin M. Kurç, Ümit V. Çatalyürek, Dhabaleswar K. Panda, Joel H. Saltz
2003	A	`conf`	Optimizing Reduction Computations In a Distributed Environment. SC Tahsin M. Kurç, Feng Lee, Gagan Agrawal, Ümit V. Çatalyürek, Renato Ferreira, Joel H. Saltz
2003	J	`jnl`	The virtual microscope. IEEE Trans. Inf. Technol. Biomed. Ümit V. Çatalyürek, Michael D. Beynon, Chialin Chang, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2002	A	`conf`	Active Proxy-G: optimizing the query execution process in the grid. SC Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2002	A	`conf`	Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems. IPDPS Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Alan Sussman, Joel H. Saltz
2002	A	`conf`	Executing multiple pipelined data analysis operations in the grid. SC Matthew Spencer, Renato Ferreira, Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Alan Sussman, Joel H. Saltz
2002	A	`conf`	Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments. IPDPS Ümit V. Çatalyürek, Eric Stahlberg, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz
2002	B	`conf`	Multiple Query Optimization for Data Analysis Applications on Clusters of SMPs. CCGRID Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2002	J	`jnl`	Optimizing execution of component-based applications using group instances. Future Gener. Comput. Syst. Michael D. Beynon, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2002	J	`jnl`	Processing large-scale multi-dimensional data in parallel and distributed environments. Parallel Comput. Michael D. Beynon, Chialin Chang, Ümit V. Çatalyürek, Tahsin M. Kurç, Alan Sussman, Henrique Andrade, Renato Ferreira, Joel H. Saltz
2002	A	`conf`	Scheduling Multiple Data Visualization Query Workloads on a Shared Memory Machine. IPDPS Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2001	—	`conf`	A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation. PP Chialin Chang, Tahsin M. Kurç, Alan Sussman, Ümit V. Çatalyürek, Joel H. Saltz
2001	J	`jnl`	Distributed processing of very large datasets with DataCutter. Parallel Comput. Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Chialin Chang, Alan Sussman, Joel H. Saltz
2001	A	`conf`	Efficient execution of multiple query workloads in data analysis applications. SC Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2001	B	`conf`	Optimizing Execution of Component-based Applications using Group Instances. CCGRID Michael D. Beynon, Alan Sussman, Tahsin M. Kurç, Joel H. Saltz
2001	—	`conf`	Performance Optimization for Data Intensive Grid Applications. Active Middleware Services Michael D. Beynon, Alan Sussman, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz
2001	J	`jnl`	Visualization of Large Data Sets with the Active Data Repository. IEEE Computer Graphics and Applications Tahsin M. Kurç, Ümit V. Çatalyürek, Chialin Chang, Alan Sussman, Joel H. Saltz
2000	—	`conf`	DataCutter: Middleware for Filtering Very Large Scientific Datasets on Archival Storage Systems. IEEE Symposium on Mass Storage Systems Michael D. Beynon, Renato Ferreira, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2000	—	`conf`	Design of a Framework for Data-Intensive Wide-Area Applications. Heterogeneous Computing Workshop Michael D. Beynon, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2000	J	`jnl`	Efficient Performance Prediction for Large-Scale, Data-Intensive Applications. Int. J. High Perform. Comput. Appl. Tahsin M. Kurç, Mustafa Uysal, Hyeonsang Eom, Jeffrey K. Hollingsworth, Joel H. Saltz, Alan Sussman
2000	J	`jnl`	Image-Space Decomposition Algorithms for Sort-First Parallel Volume Rendering of Unstructured Grids. J. Supercomput. Hüuseyin Kutluca, Tahsin M. Kurç, Cevdet Aykanat
2000	A	`conf`	Optimizing Retrieval and Processing of Multi-Dimensional Scientific Datasets. IPDPS Chialin Chang, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
1999	Misc	`conf`	A High-Performance Database System for Managing Large Multi-resolution Medical Images. AMIA Tahsin M. Kurç, Michael D. Beynon, Chialin Chang, Renato Ferreira, Ben Bederson, Joel H. Saltz, Alan Sussman
1999	—	`conf`	Coupling Multiple Simulations via a High Performance Customizable Database System. PP Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
1999	J	`jnl`	Object-Relational Queries into Multidimensional Databases with the Active Data Repository. Parallel Process. Lett. Renato Ferreira, Tahsin M. Kurç, Michael D. Beynon, Chialin Chang, Alan Sussman, Joel H. Saltz
1999	A	`conf`	Querying Very Large Multi-dimensional Datasets in ADR. SC Tahsin M. Kurç, Chialin Chang, Renato Ferreira, Alan Sussman, Joel H. Saltz
1998	—	`conf`	A Performance Prediction Framework for Data Intensive Applications on Large Scale Parallel Machines. LCR Mustafa Uysal, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
1998	J	`jnl`	Object-space parallel polygon rendering on hypercubes. Comput. Graph. Tahsin M. Kurç, Cevdet Aykanat, Bülent Özgüç
1997	—	`conf`	A Comparison of Spatial Subdivision Algorithms for Sort-First Rendering. HPCN Europe Tahsin M. Kurç, Hüuseyin Kutluca, Cevdet Aykanat, Bülent Özgüç
1997	J	`jnl`	A parallel scaled conjugate-gradient algorithm for the solution phase of gathering radiosity on hypercubes. Vis. Comput. Tahsin M. Kurç, Cevdet Aykanat, Bülent Özgüç
1997	—	`—`	Pararllel rendering algorithms for distributed-memory multicomputers (Çok işlemcili dağıtık hafızalı bilgisayarlarda paralel görüntüleme algoritmaları) Tahsin M. Kurç
1996	—	`conf`	Active Pixel Merging on Hypercube Multicomputers. HPCN Europe Tahsin M. Kurç, Cevdet Aykanat, Bülent Özgüç
1995	—	`conf`	Comparison of Two Image-Space Subdivision Algorithms for Direct Volume Rendering on Distributed-Memory Multicomputers. PARA Egemen Tanin, Tahsin M. Kurç, Cevdet Aykanat, Bülent Özgüç
1991	—	`conf`	Efficient Parallel Maze Routing Algorithms on a Hypercube Multicomputer. ICPP (3) Cevdet Aykanat, Tahsin M. Kurç
1991	—	`conf`	Parallelization of Lee's Routing Algorithm on a Hypercube Multicomputer. EDMCC Tahsin M. Kurç, Cevdet Aykanat, Fikret Erçal