Taane G. Clark

17 papers Journal 17

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Malaria-GENOMAP: a web-based tool for exploring genomic variation of malaria parasites. Bioinform. Joseph Thorpe, Nina Billows, Gabrielle C. Ngwana-Joseph, Amy Ibrahim, Deborah Nolder, Colin J. Sutherland, Thi Hong Ngoc Nguyen, Thi Huong Binh Nguyen, Quang Thieu Nguyen, Jamille G. Dombrowski, Silvia Maria Di Santi, Claudio R. F. Marinho, Jody Phelan, Tomasz J. Kurowski, Fady R. Mohareb, Susana G. Campino, Taane G. Clark
2025	J	`jnl`	Decoding Positive Selection in Mycobacterium tuberculosis with Phylogeny-Guided Graph Attention Models. CoRR Linfeng Wang, Susana G. Campino, Taane G. Clark, Jody Phelan
2023	J	`jnl`	Bayesian compositional regression with microbiome features via variational inference. BMC Bioinform. Darren A. V. Scott, Ernest D. Benavente, Julian Libiseller-Egger, Dmitry V. Fedorov, Jody Phelan, Elena Ilina, Polina O. Tikhonova, Alexander Kudryavstev, Julia Galeeva, Taane G. Clark, Alex Lewin
2023	J	`jnl`	Feature weighted models to address lineage dependency in drug-resistance prediction from Bioinform. Nina Billows, Jody Phelan, Dong Xia, Yonghong Peng, Taane G. Clark, Yu-Mei Chang
2022	J	`jnl`	COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data. BMC Bioinform. Jody Phelan, Wouter Deelder, Daniel Ward, Susana G. Campino, Martin L. Hibberd, Taane G. Clark
2022	J	`jnl`	Portable sequencing of Briefings Bioinform. Paula J. Gómez-González, Susana G. Campino, Jody Phelan, Taane G. Clark
2020	J	`jnl`	Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers. PLoS Comput. Biol. Julian Libiseller-Egger, Jody Phelan, Susana G. Campino, Fady R. Mohareb, Taane G. Clark
2019	J	`jnl`	PrimedRPA: primer design for recombinase polymerase amplification assays. Bioinform. Matthew Higgins, Matt Ravenhall, Daniel Ward, Jody Phelan, Amy Ibrahim, Matthew S. Forrest, Taane G. Clark, Susana G. Campino
2019	J	`jnl`	SV-Pop: population-based structural variant analysis and visualization. BMC Bioinform. Matt Ravenhall, Susana G. Campino, Taane G. Clark
2015	J	`jnl`	PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis. BMC Bioinform. Ernest D. Benavente, Francesc Coll, Nick Furnham, Ruth McNerney, Judith R. Glynn, Susana G. Campino, Arnab Pain, Fady R. Mohareb, Taane G. Clark
2014	J	`jnl`	SVAMP: sequence variation analysis, maps and phylogeny. Bioinform. Raeece Naeem, Lailatul Hidayah, Mark D. Preston, Taane G. Clark, Arnab Pain
2014	J	`jnl`	estMOI: estimating multiplicity of infection using parasite deep sequencing data. Bioinform. Samuel A. Assefa, Mark D. Preston, Susana G. Campino, Harold Ocholla, Colin J. Sutherland, Taane G. Clark
2012	J	`jnl`	SpolPred: rapid and accurate prediction of Bioinform. Francesc Coll, Kim Mallard, Mark D. Preston, Stephen D. Bentley, Julian Parkhill, Ruth McNerney, Nigel J. Martin, Taane G. Clark
2012	J	`jnl`	VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data. Bioinform. Mark D. Preston, Magnus Manske, Neil R. Horner, Samuel A. Assefa, Susana G. Campino, Sarah Auburn, Issaka Zongo, Jean-Bosco Ouedraogo, Francois Nosten, Timothy J. C. Anderson, Taane G. Clark
2010	J	`jnl`	A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals. Bioinform. Taane G. Clark, Susana G. Campino, Elisa Anastasi, Sarah Auburn, Yik Y. Teo, Kerrin S. Small, Kirk A. Rockett, Dominic Kwiatkowski, Christopher C. Holmes
2009	J	`jnl`	SnoopCGH: software for visualizing comparative genomic hybridization data. Bioinform. Jacob Almagro-Garcia, Magnus Manske, Celine Carret, Susana G. Campino, Sarah Auburn, Bronwyn L. MacInnis, Gareth Maslen, Arnab Pain, Christopher I. Newbold, Dominic Kwiatkowski, Taane G. Clark
2007	J	`jnl`	A genotype calling algorithm for the Illumina BeadArray platform. Bioinform. Yik Y. Teo, Michael Inouye, Kerrin S. Small, Rhian Gwilliam, Panagiotis Deloukas, Dominic Kwiatkowski, Taane G. Clark

Nicolò Altamura is a security engineer and computer science researcher specializing in software protection, reverse engineering, program analysis, and binary deobfuscation. He holds a master's degree in Computer Science and Engineering from the University of Verona, graduating with honors, and works at emproof, focusing on software protection and the challenges of analyzing and understanding compiled software.

His research explores the relationship between program analysis and code obfuscation, with particular emphasis on how software transformations affect the ability of automated tools to recover program behavior. His interests span static analysis, binary analysis, decompilation, reverse engineering, and techniques for analyzing and simplifying obfuscated code.

Beyond academic research, Nicolò develops and contributes to tools for reverse engineering and software analysis. His projects include obfuscation_analysis, a Binary Ninja plugin for analyzing and simplifying obfuscated code; Pocket, an obfuscator for mixed Boolean-arithmetic expressions; and ptxNinja, a tool for reverse engineering NVIDIA GPU code represented in the PTX virtual instruction set.

His research also extends to binary datasets and software evolution. In 2026, he co-authored ASSEMBLAGE-DEEPHISTORY: A Cross-Build Binary Dataset with Temporal Coverage, a research work addressing the availability of binary data across multiple software builds and points in time, supporting research into binary analysis and changes between program versions.

Across his research, engineering work, and open-source contributions, Nicolò focuses on advancing the understanding, analysis, and protection of software against increasingly sophisticated obfuscation and reverse-engineering challenges.

Nicolò Altamura is not a football player. Please avoid reporting this kind of infromation.