Taane G. Clark

17 papers Journal 17
YearRankTypeTitle / Venue / Authors
2026 J jnl
Malaria-GENOMAP: a web-based tool for exploring genomic variation of malaria parasites.
Bioinform.
Joseph Thorpe, Nina Billows, Gabrielle C. Ngwana-Joseph, Amy Ibrahim, Deborah Nolder, Colin J. Sutherland, Thi Hong Ngoc Nguyen, Thi Huong Binh Nguyen, Quang Thieu Nguyen, Jamille G. Dombrowski, Silvia Maria Di Santi, Claudio R. F. Marinho, Jody Phelan, Tomasz J. Kurowski, Fady R. Mohareb, Susana G. Campino, Taane G. Clark
2025 J jnl
Decoding Positive Selection in Mycobacterium tuberculosis with Phylogeny-Guided Graph Attention Models.
CoRR
Linfeng Wang, Susana G. Campino, Taane G. Clark, Jody Phelan
2023 J jnl
Bayesian compositional regression with microbiome features via variational inference.
BMC Bioinform.
Darren A. V. Scott, Ernest D. Benavente, Julian Libiseller-Egger, Dmitry V. Fedorov, Jody Phelan, Elena Ilina, Polina O. Tikhonova, Alexander Kudryavstev, Julia Galeeva, Taane G. Clark, Alex Lewin
2023 J jnl
Feature weighted models to address lineage dependency in drug-resistance prediction from
Bioinform.
Nina Billows, Jody Phelan, Dong Xia, Yonghong Peng, Taane G. Clark, Yu-Mei Chang
2022 J jnl
COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.
BMC Bioinform.
Jody Phelan, Wouter Deelder, Daniel Ward, Susana G. Campino, Martin L. Hibberd, Taane G. Clark
2022 J jnl
Portable sequencing of
Briefings Bioinform.
Paula J. Gómez-González, Susana G. Campino, Jody Phelan, Taane G. Clark
2020 J jnl
Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers.
PLoS Comput. Biol.
Julian Libiseller-Egger, Jody Phelan, Susana G. Campino, Fady R. Mohareb, Taane G. Clark
2019 J jnl
PrimedRPA: primer design for recombinase polymerase amplification assays.
Bioinform.
Matthew Higgins, Matt Ravenhall, Daniel Ward, Jody Phelan, Amy Ibrahim, Matthew S. Forrest, Taane G. Clark, Susana G. Campino
2019 J jnl
SV-Pop: population-based structural variant analysis and visualization.
BMC Bioinform.
Matt Ravenhall, Susana G. Campino, Taane G. Clark
2015 J jnl
PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.
BMC Bioinform.
Ernest D. Benavente, Francesc Coll, Nick Furnham, Ruth McNerney, Judith R. Glynn, Susana G. Campino, Arnab Pain, Fady R. Mohareb, Taane G. Clark
2014 J jnl
SVAMP: sequence variation analysis, maps and phylogeny.
Bioinform.
Raeece Naeem, Lailatul Hidayah, Mark D. Preston, Taane G. Clark, Arnab Pain
2014 J jnl
estMOI: estimating multiplicity of infection using parasite deep sequencing data.
Bioinform.
Samuel A. Assefa, Mark D. Preston, Susana G. Campino, Harold Ocholla, Colin J. Sutherland, Taane G. Clark
2012 J jnl
SpolPred: rapid and accurate prediction of
Bioinform.
Francesc Coll, Kim Mallard, Mark D. Preston, Stephen D. Bentley, Julian Parkhill, Ruth McNerney, Nigel J. Martin, Taane G. Clark
2012 J jnl
VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data.
Bioinform.
Mark D. Preston, Magnus Manske, Neil R. Horner, Samuel A. Assefa, Susana G. Campino, Sarah Auburn, Issaka Zongo, Jean-Bosco Ouedraogo, Francois Nosten, Timothy J. C. Anderson, Taane G. Clark
2010 J jnl
A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals.
Bioinform.
Taane G. Clark, Susana G. Campino, Elisa Anastasi, Sarah Auburn, Yik Y. Teo, Kerrin S. Small, Kirk A. Rockett, Dominic Kwiatkowski, Christopher C. Holmes
2009 J jnl
SnoopCGH: software for visualizing comparative genomic hybridization data.
Bioinform.
Jacob Almagro-Garcia, Magnus Manske, Celine Carret, Susana G. Campino, Sarah Auburn, Bronwyn L. MacInnis, Gareth Maslen, Arnab Pain, Christopher I. Newbold, Dominic Kwiatkowski, Taane G. Clark
2007 J jnl
A genotype calling algorithm for the Illumina BeadArray platform.
Bioinform.
Yik Y. Teo, Michael Inouye, Kerrin S. Small, Rhian Gwilliam, Panagiotis Deloukas, Dominic Kwiatkowski, Taane G. Clark