T. Ian Simpson

17 papers Journal 12Unranked 5
YearRankTypeTitle / Venue / Authors
2026 J jnl
Process-Supervised Multi-Agent Reinforcement Learning for Reliable Clinical Reasoning.
CoRR
Chaeeun Lee, T. Michael Yates, Pasquale Minervini, T. Ian Simpson
2025 J jnl
An integrative network approach for longitudinal stratification in Parkinson's disease.
PLoS Comput. Biol.
Barry Ryan, Riccardo E. Marioni, T. Ian Simpson
2025 J jnl
Automatic genetic phenotype normalization from dysmorphology physical examinations: an overview of the BioCreative VIII - Task 3 competition.
Database J. Biol. Databases Curation
Davy Weissenbacher, Xinwei Zhao, Jessica R. C. Priestley, Katherine M. Szigety, Sarah F. Schmidt, Karen O'Connor, Ekin Soysal, Kirk Roberts, Jiewei Qi, Ling Luo, Zhihao Yang, Hongfei Lin, Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang, Areej Alhassan, Viktor Schlegel, Monira Aloud, Riza Batista-Navarro, Goran Nenadic, Ying-Jia Lin, Zhi-Quan Feng, Hung-Yu Kao, Ian M. Campbell, Graciela Gonzalez-Hernandez
2025 J jnl
Community Detection in Multimodal Data: A Similarity Network Perspective.
CoRR
Aidan Marnane, T. Ian Simpson
2025 J jnl
GNN-Suite: a Graph Neural Network Benchmarking Framework for Biomedical Informatics.
CoRR
Sebestyén Kamp, Giovanni Stracquadanio, T. Ian Simpson
2025 J jnl
KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports.
CoRR
Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang
2025 — conf
Multilingual and Nested Biomedical Named Entity Normalization via Candidate Retrieval and Lightweight Large Language Model Disambiguation.
CLEF (Working Notes)
Antoine D. Lain, Chaeeun Lee, Simona E. Doneva, Maria Juliana Rodriguez-Cubillos, Elisa Castagnari, T. Ian Simpson, Joram M. Posma
2025 — conf
Understanding Gut-Brain Interplay in Scientific Literature: A Hybrid Approach from Classification to Generative LLM Reasoning.
CLEF (Working Notes)
Chaeeun Lee, Simona E. Doneva, Maria Juliana Rodriguez-Cubillos, Elisa Castagnari, Antoine D. Lain, Joram M. Posma, T. Ian Simpson
2024 — conf
Classification of Genetic Developmental Disorders in the Peer-Reviewed Literature using biomedical ontologies.
ICBO
T. Michael Yates, T. Ian Simpson
2024 — conf
Comparative Analyses of Multilingual Drug Entity Recognition Systems for Clinical Case Reports In Cardiology.
CLEF (Working Notes)
Chaeeun Lee, T. Ian Simpson, Joram M. Posma, Antoine D. Lain
2024 — conf
Edinburgh Clinical NLP at MEDIQA-CORR 2024: Guiding Large Language Models with Hints.
ClinicalNLP@NAACL
Aryo Gema, Chaeeun Lee, Pasquale Minervini, Luke Daines, T. Ian Simpson, Beatrice Alex
2024 J jnl
Edinburgh Clinical NLP at MEDIQA-CORR 2024: Guiding Large Language Models with Hints.
CoRR
Aryo Pradipta Gema, Chaeeun Lee, Pasquale Minervini, Luke Daines, T. Ian Simpson, Beatrice Alex
2024 J jnl
Multi-Omic Graph Diagnosis (MOGDx): a data integration tool to perform classification tasks for heterogeneous diseases.
Bioinform.
Barry Ryan, Riccardo E. Marioni, T. Ian Simpson
2024 J jnl
The Ontoverse: Democratising Access to Knowledge Graph-based Data Through a Cartographic Interface.
CoRR
Johannes Zimmermann, Dariusz Wiktorek, Thomas Meusburger, Miquel Monge-Dalmau, Antonio Fabregat, Alexander Jarasch, Günter Schmidt, Jorge S. Reis-Filho, T. Ian Simpson
2022 J jnl
Creation and evaluation of full-text literature-derived, feature-weighted disease models of genetically determined developmental disorders.
Database J. Biol. Databases Curation
Thabo M. Yates, A. Laine, Jennifer Campbell, David R. FitzPatrick, T. Ian Simpson
2011 J jnl
Bio: : Homology: : InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping.
BMC Bioinform.
Giuseppe Gallone, T. Ian Simpson, J. Douglas Armstrong, Andrew P. Jarman
2010 J jnl
Merged consensus clustering to assess and improve class discovery with microarray data.
BMC Bioinform.
T. Ian Simpson, J. Douglas Armstrong, Andrew P. Jarman