Sébastien Moretti

24 papers Journal 19Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.
CoRR
Jerven T. Bolleman, Vincent Emonet, Adrian M. Altenhoff, Amos Bairoch, Marie-Claude Blatter, Alan J. Bridge, Severine Duvaud, Elisabeth Gasteiger, Dmitry Kuznetsov, Sébastien Moretti, Pierre-André Michel, Anne Morgat, Marco Pagni, Nicole Redaschi, Monique Zahn-Zabal, Tarcisio Mendes de Farias, Ana Claudia Sima
2024 — conf
Application of the RDF framework to integrate heterogenous experimental data of a large chemo- and biodiverse collection from a collaborative research project.
SWAT4HCLS
Frédéric Burdet, Luis-Manuel Quiros-Guerrero, Olivier Kirchhoffer, Jahn Nitschke, Pierre-Marie Allard, Louis-Félix Nothias, Arnaud Gaudry, Sébastien Moretti, Robin Engler, Emerson Ferreira Queiroz, Nabil Hanna, Chunyan Wu, Antonio Grondin, Bruno David, Thierry Soldati, Christian Wolfrum, Erick Carreira, Jean-Luc Wolfender, Marco Pagni, Florence Mehl
2021 J jnl
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models.
Nucleic Acids Res.
Sébastien Moretti, T. Van Du Tran, Florence Mehl, Mark Ibberson, Marco Pagni
2021 J jnl
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.
Nucleic Acids Res.
Frederic B. Bastian, Julien Roux, Anne Niknejad, Aurélie Comte, Sara S. Fonseca Costa, Tarcisio Mendes de Farias, Sébastien Moretti, Gilles Parmentier, Valentine Rech de Laval, Marta Rosikiewicz, Julien Wollbrett, Amina Echchiki, Angélique Escoriza, Walid H. Gharib, Mar Gonzales-Porta, Yohan Jarosz, Balazs Laurenczy, Philippe Moret, Emilie Person, Patrick Roelli, Komal Sanjeev, Mathieu Seppey, Marc Robinson-Rechavi
2019 J jnl
Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis.
Bioinform.
T. Van Du Tran, Sébastien Moretti, Alix T. Coste, Sara Amorim-Vaz, Dominique Sanglard, Marco Pagni
2017 J jnl
Updates in Rhea - an expert curated resource of biochemical reactions.
Nucleic Acids Res.
Anne Morgat, Thierry Lombardot, Kristian B. Axelsen, Lucila Aimo, Anne Niknejad, Nevila Hyka-Nouspikel, Elisabeth Coudert, Monica Pozzato, Marco Pagni, Sébastien Moretti, Steven Rosanoff, Joseph Onwubiko, Lydie Bougueleret, Ioannis Xenarios, Nicole Redaschi, Alan J. Bridge
2016 J jnl
MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks.
Nucleic Acids Res.
Sébastien Moretti, Olivier Martin, T. Van Du Tran, Alan J. Bridge, Anne Morgat, Marco Pagni
2016 J jnl
Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Res.
Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak
2014 J jnl
Reconciliation of metabolites and biochemical reactions for metabolic networks.
Briefings Bioinform.
Thomas Bernard, Alan J. Bridge, Anne Morgat, Sébastien Moretti, Ioannis Xenarios, Marco Pagni
2014 J jnl
Selectome update: quality control and computational improvements to a database of positive selection.
Nucleic Acids Res.
Sébastien Moretti, Balazs Laurenczy, Walid H. Gharib, Briséïs Castella, Arnold Kuzniar, Hannes Schabauer, Romain A. Studer, Mario Valle, Nicolas Salamin, Heinz Stockinger, Marc Robinson-Rechavi
2013 J jnl
MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.
Bioinform.
Mathias Ganter, Thomas Bernard, Sébastien Moretti, Jörg Stelling, Marco Pagni
2012 J jnl
ExPASy: SIB bioinformatics resource portal.
Nucleic Acids Res.
Panu Artimo, Manohar Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi, Edouard De Castro, Severine Duvaud, Volker Flegel, Arnaud Fortier, Elisabeth Gasteiger, Aurélien Grosdidier, Céline Hernandez, Vassilios Ioannidis, Dmitri Kuznetsov, Robin Liechti, Sébastien Moretti, Khaled Mostaguir, Nicole Redaschi, Grégoire Rossier, Ioannis Xenarios, Heinz Stockinger
2012 J jnl
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution
CoRR
Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger
2012 — conf
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution.
HealthGrid
Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger
2011 J jnl
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.
Nucleic Acids Res.
Paolo Di Tommaso, Sébastien Moretti, Ioannis Xenarios, Miquel Orobitg, Alberto Montanyola, Jia-Ming Chang, Jean-François Taly, Cédric Notredame
2010 — conf
Phylogenetic Code in the Cloud - Can it Meet the Expectations?
HealthGrid
Adam Kraut, Sébastien Moretti, Marc Robinson-Rechavi, Heinz Stockinger, Dean Flanders
2009 J jnl
Selectome: a database of positive selection.
Nucleic Acids Res.
Estelle Proux-Wéra, Romain A. Studer, Sébastien Moretti, Marc Robinson-Rechavi
2008 — conf
Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species.
DILS
Frederic B. Bastian, Gilles Parmentier, Julien Roux, Sébastien Moretti, Vincent Laudet, Marc Robinson-Rechavi
2008 J jnl
R-Coffee: a web server for accurately aligning noncoding RNA sequences.
Nucleic Acids Res.
Sébastien Moretti, Andreas Wilm, Desmond G. Higgins, Ioannis Xenarios, Cédric Notredame
2007 J jnl
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
Nucleic Acids Res.
Sébastien Moretti, Fabrice Armougom, Iain M. Wallace, Desmond G. Higgins, C. Victor Jongeneel, Cédric Notredame
2006 J jnl
APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
Bioinform.
Fabrice Armougom, Olivier Poirot, Sébastien Moretti, Desmond G. Higgins, Phillip Bucher, Vladimir Keduas, Cédric Notredame
2006 J jnl
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.
Nucleic Acids Res.
Fabrice Armougom, Sébastien Moretti, Olivier Poirot, Stéphane Audic, Pierre Dumas, Basile Schaeli, Vladimir Keduas, Cédric Notredame
2006 J jnl
PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments.
Nucleic Acids Res.
Sébastien Moretti, Frédéric Reinier, Olivier Poirot, Fabrice Armougom, Stéphane Audic, Vladimir Keduas, Cédric Notredame
2006 — conf
The iRMSD: a local measure of sequence alignment accuracy using structural information.
ISMB (Supplement of Bioinformatics)
Fabrice Armougom, Sébastien Moretti, Vladimir Keduas, Cédric Notredame