Szymon M. Kielbasa

13 papers B 1Journal 8Unranked 4
YearRankTypeTitle / Venue / Authors
2019 J jnl
12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr.
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
2017 B conf
BIOPET: towards Scalable, Maintainable, User-friendly, Robust and Flexible NGS data analysis pipelines.
CCGrid
Peter van't Hof, Szymon M. Kielbasa, Wibowo Arindrarto, Jeroen F. J. Laros, Sander Bollen, Hailiang Mei
2010 J jnl
Targetfinder.org: a resource for systematic discovery of transcription factor target genes.
Nucleic Acids Res.
Szymon M. Kielbasa, Nils Blüthgen, Michael Fähling, Ralf Mrowka
2010 J jnl
TransFind - predicting transcriptional regulators for gene sets.
Nucleic Acids Res.
Szymon M. Kielbasa, Holger Klein, Helge G. Roider, Martin Vingron, Nils Blüthgen
2005 J jnl
HuSiDa - the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells.
Nucleic Acids Res.
Matthias Truss, Maciej Swat, Szymon M. Kielbasa, Reinhold Schäfer, Hanspeter Herzel, Christian Hagemeier
2005 J jnl
Measuring similarities between transcription factor binding sites.
BMC Bioinform.
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
2004 — conf
Genome-wide Analysis of Functions Regulated by Sets of Transcription Factors.
German Conference on Bioinformatics
Szymon M. Kielbasa, Nils Blüthgen, Hanspeter Herzel
2004 J jnl
HOMGL - comparing genelists across species and with different accession numbers.
Bioinform.
Nils Blüthgen, Szymon M. Kielbasa, Branka Cajavec, Hanspeter Herzel
2004 J jnl
SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.
Nucleic Acids Res.
Zhenjun Hu, Yutao Fu, Anason S. Halees, Szymon M. Kielbasa, Zhiping Weng
2003 — conf
Modeling the G1/S transition in mammals -Bifurcation an alysis of elementary modules.
German Conference on Bioinformatics
Maciej Swat, Alexander E. Kel, Szymon M. Kielbasa, Hanspeter Herzel
2001 J jnl
Combining frequency and positional information to predict transcription factor binding sites.
Bioinform.
Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, Hanspeter Herzel
2001 — conf
Visualization and analysis of gene expression data using freeware and GPL-Software.
German Conference on Bioinformatics
E. W. Wolski, Christoph K. Wierling, Thomas Kreitler, Szymon M. Kielbasa, U. Schneider, Johan Gobom, Hans Lehrach, Holger Eickhoff
2000 — conf
Finding Transcription Factor Binding Sites in Coregulated Genes by Exhaustive Sequence Search.
German Conference on Bioinformatics
Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, Hanspeter Herzel