Sven Bergmann

23 papers B 1Journal 20Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
PLUME-OCT: A quality control tool to enhance statistical power in the analysis of biomarkers from 3D biomedical datasets of OCT images.
Comput. Biol. Medicine
Alicia Milloz, Grégoire Molas, Yves Paychère, Alexandre Bouillon, Mathieu Charbonnier, Victor Amiot, James Bardet, Flavie Torrecillos, Dennis Bontempi, David Presby, Laurent Gurtler, Sandro De Zanet, Reinier O. Schlingemann, Sven Bergmann, Sofia Ortin Vela, Ciara Bergin, Ilenia Meloni, Mattia Tomasoni
2026 J jnl
retinalysis-vascx: An explainable software toolbox for the extraction of retinal vascular biomarkers.
CoRR
Jose Vargas Quiros, Michael J. Beyeler, Sofia Ortin Vela, Eyened Reading Center, Sven Bergmann, Caroline C. W. Klaver, Bart Liefers
2023 J jnl
PascalX: a Python library for GWAS gene and pathway enrichment tests.
Bioinform.
Daniel Krefl, Alessandro Brandulas Cammarata, Sven Bergmann
2022 J jnl
Cross-GWAS coherence test at the gene and pathway level.
PLoS Comput. Biol.
Daniel Krefl, Sven Bergmann
2022 J jnl
Estimating RNA dynamics using one time point for one sample in a single-pulse metabolic labeling experiment.
BMC Bioinform.
Micha Hersch, Adriano Biasini, Ana C. Marques, Sven Bergmann
2020 J jnl
MONET: a toolbox integrating top-performing methods for network modularization.
Bioinform.
Mattia Tomasoni, Sergio Gómez, Jake Crawford, Weijia Zhang, Sarvenaz Choobdar, Daniel Marbach, Sven Bergmann
2019 J jnl
Interoperable and scalable data analysis with microservices: applications in metabolomics.
Bioinform.
Payam Emami Khoonsari, Pablo A. Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth
2017 J jnl
Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility.
PLoS Comput. Biol.
David Lamparter, Daniel Marbach, Rico Rueedi, Sven Bergmann, Zoltán Kutalik
2017 J jnl
Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy.
PLoS Comput. Biol.
Rico Rueedi, Roger Mallol, Johannes Raffler, David Lamparter, Nele Friedrich, Peter Vollenweider, Gérard Waeber, Gabi Kastenmüller, Zoltán Kutalik, Sven Bergmann
2016 J jnl
Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics.
PLoS Comput. Biol.
David Lamparter, Daniel Marbach, Rico Rueedi, Zoltán Kutalik, Sven Bergmann
2014 J jnl
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res.
Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel
2012 J jnl
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.
Bioinform.
Barbara Piasecka, Marc Robinson-Rechavi, Sven Bergmann
2012 J jnl
Iterative Estimation of Rigid-Body Transformations - Application to Robust Object Tracking and Iterative Closest Point.
J. Math. Imaging Vis.
Micha Hersch, Aude Billard, Sven Bergmann
2011 — conf
A New Scaling Measure Quantifies the Conservation of Proportions of Gene Expression Profiles in Developing Organic Shapes.
SHAPES
Aitana Morton de Lachapelle, Sven Bergmann
2011 — conf
Connecting Points by Smooth Connection Functions Defines Shapes in the Smoothest Possible Way.
SHAPES
Alex Alon, Sven Bergmann
2011 J jnl
Using Transcription Modules to Identify Expression Clusters Perturbed in Williams-Beuren Syndrome.
PLoS Comput. Biol.
Charlotte N. Henrichsen, Gábor Csárdi, Marie-Thérèse Zabot, Carmela Fusco, Sven Bergmann, Giuseppe Merla, Alexandre Reymond
2010 J jnl
EuroDia: a beta-cell gene expression resource.
Database J. Biol. Databases Curation
Robin Liechti, Gábor Csárdi, Sven Bergmann, Frédéric Schütz, Thierry Sengstag, Sylvia F. Boj, Joan-Marc Servitja, Jorge Ferrer, Leentje Van Lommel, Frans Schuit, Sonia Klinger, Bernard Thorens, Najib Naamane, Decio L. Eizirik, Lorella Marselli, Marco Bugliani, Piero Marchetti, Stephanie Lucas, Cecilia Holm, C. Victor Jongeneel, Ioannis Xenarios
2010 J jnl
ExpressionView - an interactive viewer for modules identified in gene expression data.
Bioinform.
Andreas Lüscher, Gábor Csárdi, Aitana Morton de Lachapelle, Zoltán Kutalik, Bastian Peter, Sven Bergmann
2010 J jnl
FastEpistasis: a high performance computing solution for quantitative trait epistasis.
Bioinform.
Thierry Schüpbach, Ioannis Xenarios, Sven Bergmann, Karen Kapur
2010 J jnl
Modular analysis of gene expression data with R.
Bioinform.
Gábor Csárdi, Zoltán Kutalik, Sven Bergmann
2006 B conf
Set-up of a Unit-Selection Synthesis with a Prominent Voice.
LREC
Stefan Breuer, Sven Bergmann, Ralf Dragon, Sebastian Möller
2004 J jnl
Challenges and prospects in the analysis of large-scale gene expression data.
Briefings Bioinform.
Jan Ihmels, Sven Bergmann
2004 J jnl
Defining transcription modules using large-scale gene expression data.
Bioinform.
Jan Ihmels, Sven Bergmann, Naama Barkai