Sushmita Roy

19 papers A* 3Misc 1Journal 12Unranked 3
YearRankTypeTitle / Venue / Authors
2023 J jnl
ISMB/ECCB 2023 proceedings.
Bioinform.
Yann Ponty, Sushmita Roy
2023 J jnl
Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation.
PLoS Comput. Biol.
Brittany Baur, Junha Shin, Jacob Schreiber, Shilu Zhang, Yi Zhang, Mohith Manjunath, Jun S. Song, William Stafford Noble, Sushmita Roy
2022 — conf
Comparison of deep and shallow graph representation learning algorithms for detecting modules in molecular networks.
BIBM
Zhiwei Song, Brittany A. Baur, Sushmita Roy
2022 J jnl
ISMB 2022 proceedings.
Bioinform.
Christophe Dessimoz, Sushmita Roy
2016 J jnl
Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens.
PLoS Comput. Biol.
Deborah Chasman, Kevin B. Walters, Tiago J. S. Lopes, Amie J. Eisfeld, Yoshihiro Kawaoka, Sushmita Roy
2016 J jnl
Multi-task consensus clustering of genome-wide transcriptomes from related biological conditions.
Bioinform.
Zhen Niu, Deborah Chasman, Amie J. Eisfeld, Yoshihiro Kawaoka, Sushmita Roy
2014 J jnl
High-order interactions observed in multi-task intrinsic networks are dominant indicators of aberrant brain function in schizophrenia.
NeuroImage
Sergey M. Plis, Jing Sui, Terran Lane, Sushmita Roy, Vincent P. Clark, Vamsi K. Potluru, René J. Huster, Andrew Michael, Scott R. Sponheim, Michael P. Weisend, Vince D. Calhoun
2013 J jnl
Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks.
PLoS Comput. Biol.
Sushmita Roy, Stephen Lagree, Zhonggang Hou, James A. Thomson, Ron M. Stewart, Audrey P. Gasch
2011 J jnl
A multiple network learning approach to capture system-wide condition-specific responses.
Bioinform.
Sushmita Roy, Margaret Werner-Washburne, Terran Lane
2010 — conf
Information-Theoretic Inference of Gene Networks Using Backward Elimination.
BIOCOMP
Patrick Meyer, Daniel Marbach, Sushmita Roy, Manolis Kellis
2009 Misc conf
Inference of Functional Networks of Condition-Specific Response--A Case Study Of Quiescence In Yeast.
Pacific Symposium on Biocomputing
Sushmita Roy, Terran Lane, Margaret Werner-Washburne, Diego Martínez
2009 A* conf
Learning structurally consistent undirected probabilistic graphical models.
ICML
Sushmita Roy, Terran Lane, Margaret Werner-Washburne
2008 J jnl
A system for generating transcription regulatory networks with combinatorial control of transcription.
Bioinform.
Sushmita Roy, Margaret Werner-Washburne, Terran Lane
2008 A* conf
Integrative Construction and Analysis of Condition-specific Biological Networks.
AAAI
Sushmita Roy, Terran Lane, Margaret Werner-Washburne
2007 A* conf
Integrative Construction and Analysis of Condition-specific Biological Networks.
AAAI
Sushmita Roy, Terran Lane, Margaret Werner-Washburne
2006 J jnl
A Hidden-State Markov Model for Cell Population Deconvolution.
J. Comput. Biol.
Sushmita Roy, Terran Lane, Christopher P. Allen, Anthony D. Aragon, Margaret Werner-Washburne
2006 J jnl
Multivariate curve resolution of time course microarray data.
BMC Bioinform.
Peter D. Wentzell, Tobias K. Karakach, Sushmita Roy, M. Juanita Martinez, Christopher P. Allen, Margaret Werner-Washburne
2005 — conf
A datamining approach to cell population deconvolution from gene expressions using particle filters.
BIOKDD
Sushmita Roy, Terran Lane, Margaret Werner-Washburne
2004 J jnl
Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.
Bioinform.
Markus Anderle II, Sushmita Roy, Hua Lin, Christopher Becker, Keith Joho