Sunyang Fu - RankMe

65 papers Misc 12Journal 35Unranked 18

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Context matching is not reasoning when performing generalized clinical evaluation of generative language models. npj Digit. Medicine Andrew Wen, Qiuhao Lu, Yu-Neng Chuang, Guanchu Wang, Jiayi Yuan, Jiamu Zhang, Liwei Wang, Sunyang Fu, Kurt Miller, Heling Jia, Stephen Bedrick, William R. Hersh, Kirk E. Roberts, Xia (Ben) Hu, Hongfang Liu
2026	J	`jnl`	Digital Twin AI: Opportunities and Challenges from Large Language Models to World Models. CoRR Rong Zhou, Dongping Chen, Zihan Jia, Yao Su, Yixin Liu, Yiwen Lu, Dongwei Shi, Yue Huang, Tianyang Xu, Yi Pan, Xinliang Li, Yohannes Abate, Qingyu Chen, Zhengzhong Tu, Yu Yang, Yu Zhang, Qingsong Wen, Gengchen Mai, Sunyang Fu, Jiachen Li, Xuyu Wang, Ziran Wang, Jing Huang, Tianming Liu, Yong Chen, Lichao Sun, Lifang He
2025	J	`jnl`	A scoping review of OMOP CDM adoption for cancer research using real world data. npj Digit. Medicine Liwei Wang, Andrew Wen, Sunyang Fu, Xiaoyang Ruan, Ming Huang, Rui Li, Qiuhao Lu, Heather Lyu, Andrew E. Williams, Hongfang Liu
2025	J	`jnl`	An Agentic Model Context Protocol Framework for Medical Concept Standardization. CoRR Jaerong Ahn, Andrew Wen, Nan Wang, Heling Jia, Zhiyi Yue, Sunyang Fu, Hongfang Liu
2025	J	`jnl`	Representation is power: traditional, hybrid, and digital recruitment results from a non-randomized clinical trial engaging adolescents. npj Digit. Medicine Taylor B. Harrison, Jessica A. Sinclair, Lisa J. Martin, Kristin Childers-Buschle, Holly Elder, Sunyang Fu, Hongfang Liu, William B. Brinkman, Melanie F. Myers, Michelle L. McGowan
2025	J	`jnl`	Social determinants of health extraction from clinical notes across institutions using large language models. npj Digit. Medicine Vipina Kuttichi Keloth, Salih Selek, Qingyu Chen, Christopher Gilman, Sunyang Fu, Yifang Dang, Xinghan Chen, Xinyue Hu, Yujia Zhou, Huan He, Jungwei W. Fan, Karen Wang, Cynthia Brandt, Cui Tao, Hongfang Liu, Hua Xu
2024	J	`jnl`	A Literature Review and Framework for Human Evaluation of Generative Large Language Models in Healthcare. CoRR Thomas Yu Chow Tam, Sonish Sivarajkumar, Sumit Kapoor, Alisa V. Stolyar, Katelyn Polanska, Karleigh R. McCarthy, Hunter Osterhoudt, Xizhi Wu, Shyam Visweswaran, Sunyang Fu, Piyush Mathur, Giovanni E. Cacciamani, Cong Sun, Yifan Peng, Yanshan Wang
2024	J	`jnl`	A framework for human evaluation of large language models in healthcare derived from literature review. npj Digit. Medicine Thomas Yu Chow Tam, Sonish Sivarajkumar, Sumit Kapoor, Alisa V. Stolyar, Katelyn Polanska, Karleigh R. McCarthy, Hunter Osterhoudt, Xizhi Wu, Shyam Visweswaran, Sunyang Fu, Piyush Mathur, Giovanni E. Cacciamani, Cong Sun, Yifan Peng, Yanshan Wang
2024	J	`jnl`	A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. J. Am. Medical Informatics Assoc. Sunyang Fu, Liwei Wang, Huan He, Andrew Wen, Nansu Zong, Anamika Kumari, Feifan Liu, Sicheng Zhou, Rui Zhang, Chenyu Li, Yanshan Wang, Jennifer St Sauver, Hongfang Liu, Sunghwan Sohn
2024	J	`jnl`	Automatic uncovering of patient primary concerns in portal messages using a fusion framework of pretrained language models. J. Am. Medical Informatics Assoc. Yang Ren, Yuqi Wu, Jungwei W. Fan, Aditya Khurana, Sunyang Fu, Dezhi Wu, Hongfang Liu, Ming Huang
2024	J	`jnl`	Characterizing the progression from mild cognitive impairment to dementia: a network analysis of longitudinal clinical visits. BMC Medical Informatics Decis. Mak. Muskan Garg, Sara Hejazi, Sunyang Fu, Maria Vassilaki, Ronald C. Petersen, Jennifer St. Sauver, Sunghwan Sohn
2024	J	`jnl`	FedFSA: Hybrid and federated framework for functional status ascertainment across institutions. J. Biomed. Informatics Sunyang Fu, Heling Jia, Maria Vassilaki, Vipina Kuttichi Keloth, Yifang Dang, Yujia Zhou, Muskan Garg, Ronald C. Petersen, Jennifer St Sauver, Sungrim Moon, Liwei Wang, Andrew Wen, Fang Li, Hua Xu, Cui Tao, Jungwei Fan, Hongfang Liu, Sunghwan Sohn
2024	J	`jnl`	Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. J. Am. Medical Informatics Assoc. Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J. Bielinski, Alanna M. Chamberlain, James R. Cerhan, Nansu Zong
2024	—	`conf`	Wonder at Chemotimelines 2024: MedTimeline: An End-to-End NLP System for Timeline Extraction from Clinical Narratives. ClinicalNLP@NAACL Liwei Wang, Qiuhao Lu, Rui Li, Sunyang Fu, Hongfang Liu
2023	J	`jnl`	An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
2023	J	`jnl`	BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks. CoRR Kai Zhang, Jun Yu, Zhiling Yan, Yixin Liu, Eashan Adhikarla, Sunyang Fu, Xun Chen, Chen Chen, Yuyin Zhou, Xiang Li, Lifang He, Brian D. Davison, Quanzheng Li, Yong Chen, Hongfang Liu, Lichao Sun
2023	—	`conf`	Classification of Patient Portal Messages with BERT-based Language Models. ICHI Yang Ren, Dezhi Wu, Aditya Khurana, George M. Mastorakos, Sunyang Fu, Nansu Zong, Jungwei Fan, Hongfang Liu, Ming Huang
2023	—	`conf`	Dementia Prediction in Older Adults Using Sex-Specific Health Trajectory Clustering. MedInfo Omar A. Ibrahim, Muskan Garg, Sunyang Fu, Maria Vassilaki, Ronald C. Petersen, Jennifer St Sauver, Sunghwan Sohn
2023	—	`conf`	Detecting Reddit Users with Depression Using a Hybrid Neural Network SBERT-CNN. ICHI Ziyi Chen, Ren Yang, Sunyang Fu, Nansu Zong, Hongfang Liu, Ming Huang
2023	J	`jnl`	Detecting Reddit Users with Depression Using a Hybrid Neural Network. CoRR Ziyi Chen, Ren Yang, Sunyang Fu, Nansu Zong, Hongfang Liu, Ming Huang
2023	—	`conf`	Harnessing Transfer Learning for Dementia Prediction: Leveraging Sex-Different Mild Cognitive Impairment Prognosis. BIBM Ziming Liu, Muskan Garg, Sunyang Fu, Surjodeep Sarkar, Maria Vassilaki, Ronald C. Petersen, Jennifer St. Sauver, Sunghwan Sohn
2023	—	`conf`	Identifying Major Depressive Disorder From Clinical Notes Using Neural Language Models with Distant Supervision. ICHI Kurt Miller, Bhavani Singh Agnikula Kshatriya, Nicolas A. Nunez, Manuel Gardea-Resendez, Euijung Ryu, Brandon J. Coombes, Sunyang Fu, Mark A. Frye, Joanna M. Biernacka, Ming Huang, Yanshan Wang
2023	J	`jnl`	Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO). J. Am. Medical Informatics Assoc. Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Muhammad F. Amith, J. Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao
2023	J	`jnl`	The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era. npj Digit. Medicine Andrew Wen, Huan He, Sunyang Fu, Sijia Liu, Kurt Miller, Liwei Wang, Kirk E. Roberts, Steven Bedrick, William R. Hersh, Hongfang Liu
2022	J	`jnl`	A hybrid model to identify fall occurrence from electronic health records. Int. J. Medical Informatics Sunyang Fu, Bjoerg Thorsteinsdottir, Xin Zhang, Guilherme S. Lopes, Sandeep R. Pagali, Nathan K. LeBrasseur, Andrew Wen, Hongfang Liu, Walter A. Rocca, Janet E. Olson, Jennifer St. Sauver, Sunghwan Sohn
2022	—	`conf`	Aspect-based Sentiment Analysis of Radiology Patient Experience Surveys: A Cohort Study. ICHI Kurt Miller, Sunyang Fu, Kris Abah, Andrea Maraboto Escarria, Kevin J. Peterson, Hongfang Liu, Lacey Hart, Nelly Tan, Ming Huang
2022	J	`jnl`	BETA: a comprehensive benchmark for computational drug-target prediction. Briefings Bioinform. Nansu Zong, Ning Li, Andrew Wen, Victoria Ngo, Yue Yu, Ming Huang, Shaika Chowdhury, Chao Jiang, Sunyang Fu, Richard Weinshilboum, Guoqian Jiang, Lawrence Hunter, Hongfang Liu
2022	J	`jnl`	Computational drug repurposing based on electronic health records: a scoping review. npj Digit. Medicine Nansu Zong, Andrew Wen, Sungrim Moon, Sunyang Fu, Liwei Wang, Yiqing Zhao, Yue Yu, Ming Huang, Yanshan Wang, Gang Zheng, Michelle M. Mielke, James R. Cerhan, Hongfang Liu
2022	—	`conf`	Detection of Dementia Signals from Longitudinal Clinical Visits Using One-Class Classification. ICHI Omar A. Ibrahim, Sunyang Fu, Maria Vassilaki, Michelle M. Mielke, Jennifer St Sauver, Ronald C. Petersen, Sunghwan Sohn
2022	—	`conf`	Evaluation of Document-Level Identification of Pulmonary Nodules in Radiology Reports Using FLAIR Natural Language Processing Framework. ICHI Ray Oian, Sunyang Fu, Hongfang Liu
2022	—	`conf`	Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing. ICHI Liwei Wang, Sunyang Fu, Andrew Wen, Xiaoyang Ruan, Huan He, Sijia Liu, Sungrim Moon, Michelle Mai, Irbaz Bin Riaz, Nan Wang, Ping Yang, Hua Xu, Jeremy L. Warner, Hongfang Liu
2022	—	`conf`	MedTator: A Serverless Web-based Tool for Corpus Annotation. ICHI Huan He, Sunyang Fu, Liwei Wang, Andrew Wen, Sijia Liu, Hongfang Liu
2022	J	`jnl`	MedTator: a serverless annotation tool for corpus development. Bioinform. Huan He, Sunyang Fu, Liwei Wang, Sijia Liu, Andrew Wen, Hongfang Liu
2022	Misc	`conf`	Probing Radiology Patient Experience Feedbacks with Aspect-based Sentiment Analysis. AMIA Kurt Miller, Ming Huang, Sunyang Fu, Kris Abah, Andrea Maraboto Escarria, Kevin J. Peterson, Hongfang Liu, Lacey Hart, Nelly Tan
2022	Misc	`conf`	Quality Assessment of Functional Status Documentation in EHR Across Institutions. AMIA Sunyang Fu, Maria Vassilaki, Omar A. Ibrahim, Ronald C. Petersen, Jennifer St. Sauver, Liwei Wang, Jungwei Fan, Hongfang Liu, Sunghwan Sohn
2022	J	`jnl`	Quality assessment of functional status documentation in EHRs across different healthcare institutions. Frontiers Digit. Health Sunyang Fu, Maria Vassilaki, Omar A. Ibrahim, Ronald C. Petersen, Sandeep R. Pagali, Jennifer St Sauver, Sungrim Moon, Liwei Wang, Jungwei Fan, Hongfang Liu, Sunghwan Sohn
2022	J	`jnl`	Real-time risk prediction of colorectal surgery-related post-surgical complications using GRU-D model. J. Biomed. Informatics Xiaoyang Ruan, Sunyang Fu, Curtis B. Storlie, Kellie L. Mathis, David W. Larson, Hongfang Liu
2022	J	`jnl`	Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO). CoRR Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Jingcheng Du, J. Wilfred Fan, Muhammad F. Amith, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao
2022	Misc	`conf`	Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator. AMIA Huan He, Sunyang Fu, Liwei Wang, Andrew Wen, Sijia Liu, Sungrim Moon, Kurt Miller, Hongfang Liu
2021	J	`jnl`	An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
2021	J	`jnl`	An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses. J. Biomed. Informatics Andrew Wen, Liwei Wang, Huan He, Sijia Liu, Sunyang Fu, Sunghwan Sohn, Jacob A. Kugel, Vinod C. Kaggal, Ming Huang, Yanshan Wang, Feichen Shen, Jungwei Fan, Hongfang Liu
2021	Misc	`conf`	Deep Learning Approaches for Breast Cancer Characteristics Extraction from Electronic Health Records. AMIA Sicheng Zhou, Liwei Wang, Nan Wang, Sunyang Fu, Chetan Shenoy, Anne H. Blaes, Hongfang Liu, Rui Zhang
2021	Misc	`conf`	Detecting Major Depressive Disorder from Clinical Notes using Neural Language Models with Distant Supervision. AMIA Bhavani Singh Agnikula Kshatriya, Nicolas A. Nunez, Manuel Gardea-Resendez, Euijung Ryu, Brandon J. Coombes, Sunyang Fu, Mark A. Frye, Joanna M. Biernacka, Yanshan Wang
2021	—	`conf`	Early Alert of Elderly Cognitive Impairment using Temporal Streaming Clustering. BIBM Omar A. Ibrahim, Sunyang Fu, Maria Vassilaki, Ronald C. Petersen, Michelle M. Mielke, Jennifer St Sauver, Sunghwan Sohn
2021	J	`jnl`	Neural Language Models with Distant Supervision to Identify Major Depressive Disorder from Clinical Notes. CoRR Bhavani Singh Agnikula Kshatriya, Nicolas A. Nunez, Manuel Gardea-Resendez, Euijung Ryu, Brandon J. Coombes, Sunyang Fu, Mark A. Frye, Joanna M. Biernacka, Yanshan Wang
2021	—	`conf`	Prediction of Incident Dementia Using Patient Temporal Health Status. MedInfo Sunyang Fu, Omar A. Ibrahim, Yanshan Wang, Maria Vassilaki, Ronald C. Petersen, Michelle M. Mielke, Jennifer St Sauver, Sunghwan Sohn
2021	—	`conf`	The Implication of Latent Information Quality to the Reproducibility of Secondary Use of Electronic Health Records. MedInfo Sunyang Fu, Andrew Wen, Sandeep R. Pagali, Nansu Zong, Jennifer St Sauver, Sunghwan Sohn, Jungwei Fan, Hongfang Liu
2020	Misc	`conf`	Accelerating Development of Learning Healthcare Systems via Distantly Supervised Knowledge Discovery. AMIA Andrew Wen, Sunyang Fu, Feichen Shen, Hongfang Liu
2020	Misc	`conf`	Annotating Chronic Pain Episodes in EHR Text: Guideline Development and Corpus Analysis. AMIA Luke A. Carlson, Molly M. Jeffery, Sunyang Fu, Huan He, Rozalina G. McCoy, Yanshan Wang, W. M. Hooten, Jennifer L. St. Sauver, Hongfang Liu, Jungwei Fan
2020	J	`jnl`	Assessment of the impact of EHR heterogeneity for clinical research through a case study of silent brain infarction. BMC Medical Informatics Decis. Mak. Sunyang Fu, Lester Y. Leung, Anne-Olivia Raulli, David F. Kallmes, Kristin A. Kinsman, Kristoff B. Nelson, Michael S. Clark, Patrick H. Luetmer, Paul R. Kingsbury, David M. Kent, Hongfang Liu
2020	Misc	`conf`	Big Impact from Small Data: Unsupervised Machine Learning Approaches for Chronic Pain Patient Subgrouping. AMIA Luke A. Carlson, Jennifer St. Sauver, Sunyang Fu, Ahmad P. Tafti, Jungwei Fan, Molly M. Jeffery, Rozalina G. McCoy, Hongfang Liu, Yanshan Wang
2020	J	`jnl`	Clinical concept extraction: A methodology review. J. Biomed. Informatics Sunyang Fu, David Chen, Huan He, Sijia Liu, Sungrim Moon, Kevin J. Peterson, Feichen Shen, Liwei Wang, Yanshan Wang, Andrew Wen, Yiqing Zhao, Sunghwan Sohn, Hongfang Liu
2020	—	`conf`	DeepTKAClassifier: Brand Classification of Total Knee Arthroplasty Implants Using Explainable Deep Convolutional Neural Networks. ISVC (2) Shi Yan, Taghi Ramazanian, Elham Sagheb, Sunyang Fu, Sunghwan Sohn, David G. Lewallen, Hongfang Liu, Walter K. Kremers, Vipin Chaudhary, Michael J. Taunton, Hilal Maradit Kremers, Ahmad P. Tafti
2020	Misc	`conf`	Extracting Patient Genetic Information from Unstructured Clinical Notes. AMIA Yiqing Zhao, Hanzhong Yu, Luke A. Carlson, Feichen Shen, Sunyang Fu, Hongfang Liu, Chen Wang
2020	J	`jnl`	MedSTS: a resource for clinical semantic textual similarity. Lang. Resour. Evaluation Yanshan Wang, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
2020	Misc	`conf`	Predicting Section Location of Clinical Sentences using BERT Encoder - A Pilot Study. AMIA Sijia Liu, Sunyang Fu, Sungrim Moon, Andrew Wen, Hongfang Liu
2019	—	`conf`	Artificial intelligence to organize patient portal messages: a journey from an ensemble deep learning text classification to rule-based named entity recognition. BIBM Ahmad P. Tafti, Sunyang Fu, Aditya Khurana, George M. Mastorakos, Kenneth G. Poole, Stephen J. Traub, James A. Yiannias, Hongfang Liu
2019	J	`jnl`	Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation. npj Digit. Medicine Andrew Wen, Sunyang Fu, Sungrim Moon, Mohamed El Wazir, Andrew Rosenbaum, Vinod C. Kaggal, Sijia Liu, Sunghwan Sohn, Hongfang Liu, Jungwei Fan
2019	J	`jnl`	Development of Clinical Concept Extraction Applications: A Methodology Review. CoRR Sunyang Fu, David Chen, Sijia Liu, Sungrim Moon, Kevin J. Peterson, Feichen Shen, Yanshan Wang, Liwei Wang, Andrew Wen, Yiqing Zhao, Sunghwan Sohn, Hongfang Liu
2019	J	`jnl`	How Good is Artificial Intelligence at Automatically Answering Consumer Questions Related to Alzheimer's Disease? CoRR Yanshan Wang, Krishna B. Soundararajan, Sunyang Fu, Luke A. Carlson, Rebecca A. Smith, David S. Knopman, Hongfang Liu
2018	—	`conf`	BioCreative/OHNLP Challenge 2018. BCB Majid Rastegar-Mojarad, Sijia Liu, Yanshan Wang, Naveed Afzal, Liwei Wang, Feichen Shen, Sunyang Fu, Hongfang Liu
2018	J	`jnl`	MedSTS: A Resource for Clinical Semantic Textual Similarity. CoRR Yanshan Wang, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
2018	Misc	`conf`	Natural Language Processing for the Identification of Silent Brain Infractions from Neuroimaging Reports. AMIA Sunyang Fu, Lester Y. Leung, Anne-Olivia Raulli, David F. Kallmes, Kristin A. Kinsman, Kristoff B. Nelson, Michael S. Clark, Patrick H. Luetmer, Paul R. Kingsbury, David M. Kent, Hongfang Liu
2018	Misc	`conf`	Supervised Learning Approach to Link Prediction in FDA Adverse Event Reporting System (FAERS) Database Network. AMIA Andy Jinseok Lee, Sunyang Fu, V. G. Vinod Vydiswaran
2015	—	`conf`	Early Prediction of Movie Success - What, Who, and When. SBP Michael T. Lash, Sunyang Fu, Shiyao Wang, Kang Zhao