Sunghwan Kim

31 papers Journal 28Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
A resource description framework (RDF) model of named entity co-occurrences in biomedical literature and its integration with PubChemRDF.
J. Cheminformatics
Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton
2025 — conf
PubChemRDF on the Google Cloud Platform.
SWAT4HCLS
Sunghwan Kim, Bo Yu, Jia He, Qingliang Li, Tiejun Cheng, Siqian He, Hannah Bast, Johannes Kalmbach, Evan E. Bolton
2025 J jnl
Summarizing relationships between chemicals, genes, proteins, and diseases in PubChem using analysis of their co-occurrences in patents.
J. Cheminformatics
Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Sunghwan Kim, Paul A. Thiessen, Evan E. Bolton
2024 J jnl
PubChem synonym filtering process using crowdsourcing.
J. Cheminformatics
Sunghwan Kim, Bo Yu, Qingliang Li, Evan E. Bolton
2023 J jnl
Database resources of the National Center for Biotechnology Information in 2023.
Nucleic Acids Res.
Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Catherine M. Farrell, Michael Feldgarden, Anna M. Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Adriana J. Malheiro, Aron Marchler-Bauer, Terence D. Murphy, Lon Phan, Shashikant Pujar, Sanjida H. Rangwala, Valerie A. Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry
2023 J jnl
PubChem 2023 update.
Nucleic Acids Res.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan E. Bolton
2023 — conf
Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDF.
SWAT4HCLS
Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton
2022 J jnl
Database resources of the national center for biotechnology information.
Nucleic Acids Res.
Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Ryan Connor, Kathryn Funk, Chris Kelly, Sunghwan Kim, Tom Madej, Aron Marchler-Bauer, Christopher J. Lanczycki, Stacy Lathrop, Zhiyong Lu, Françoise Thibaud-Nissen, Terence D. Murphy, Lon Phan, Yuri Skripchenko, Tony Tse, Jiyao Wang, Rebecca Williams, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry
2021 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
Eric W. Sayers, Jeffrey Beck, Evan Bolton, Devon Bourexis, James R. Brister, Kathi Canese, Donald C. Comeau, Kathryn Funk, Sunghwan Kim, William Klimke, Aron Marchler-Bauer, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Nuala A. O'Leary, Lon Phan, Sanjida H. Rangwala, Valerie A. Schneider, Yuri Skripchenko, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry
2021 J jnl
Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem.
Frontiers Res. Metrics Anal.
Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Siqian He, Sunghwan Kim, Qingliang Li, Paul A. Thiessen, Bo Yu, Evan Bolton
2021 J jnl
PubChem in 2021: new data content and improved web interfaces.
Nucleic Acids Res.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton
2020 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
Eric W. Sayers, Jeffrey Beck, J. Rodney Brister, Evan Bolton, Kathi Canese, Donald C. Comeau, Kathryn Funk, Anne Ketter, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Anatoliy Kuznetsov, Stacy Lathrop, Zhiyong Lu, Kelly M. McGarvey, Thomas L. Madden, Terence D. Murphy, Nuala A. O'Leary, Lon Phan, Valerie A. Schneider, Françoise Thibaud-Nissen, Barton W. Trawick, Kim D. Pruitt, James Ostell
2019 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
Eric W. Sayers, Richa Agarwala, Evan Bolton, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell
2019 J jnl
PUG-View: programmatic access to chemical annotations integrated in PubChem.
J. Cheminformatics
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte, Evan Bolton
2019 J jnl
PubChem 2019 update: improved access to chemical data.
Nucleic Acids Res.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton
2019 — ch.
Public Chemical Databases.
Encyclopedia of Bioinformatics and Computational Biology (2)
Sunghwan Kim
2018 J jnl
An update on PUG-REST: RESTful interface for programmatic access to PubChem.
Nucleic Acids Res.
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Evan Bolton
2018 J jnl
PubChem chemical structure standardization.
J. Cheminformatics
Volker Hähnke, Sunghwan Kim, Evan Bolton
2016 J jnl
Literature information in PubChem: associations between PubChem records and scientific articles.
J. Cheminformatics
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant
2016 J jnl
PubChem Substance and Compound databases.
Nucleic Acids Res.
Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant
2016 J jnl
Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets.
J. Cheminformatics
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
2015 J jnl
PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem.
Nucleic Acids Res.
Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Stephen H. Bryant
2015 J jnl
PubChem structure-activity relationship (SAR) clusters.
J. Cheminformatics
Sunghwan Kim, Lianyi Han, Bo Yu, Volker Hähnke, Evan Bolton, Stephen H. Bryant
2013 J jnl
PubChem3D: conformer ensemble accuracy.
J. Cheminformatics
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
2012 J jnl
Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis.
J. Cheminformatics
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
2011 J jnl
PubChem3D: Biologically relevant 3-D similarity.
J. Cheminformatics
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
2011 J jnl
PubChem3D: Conformer generation.
J. Cheminformatics
Evan Bolton, Sunghwan Kim, Stephen H. Bryant
2011 J jnl
PubChem3D: Diversity of shape.
J. Cheminformatics
Evan Bolton, Sunghwan Kim, Stephen H. Bryant
2011 J jnl
PubChem3D: Shape compatibility filtering using molecular shape quadrupoles.
J. Cheminformatics
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
2011 J jnl
PubChem3D: Similar conformers.
J. Cheminformatics
Evan Bolton, Sunghwan Kim, Stephen H. Bryant
2011 J jnl
PubChem3D: a new resource for scientists.
J. Cheminformatics
Evan Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant