Subhajyoti De

16 papers Journal 13Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Oncointerpreter.ai enables interactive, personalized summarization of cancer diagnostics data.
J. Am. Medical Informatics Assoc.
Arihant Tripathi, Brett Ecker, Patrick Boland, Saum Ghodoussipour, Gregory R. Riedlinger, Subhajyoti De
2023 J jnl
Denoising sparse microbial signals from single-cell sequencing of mammalian host tissues.
Nat. Comput. Sci.
Bassel Ghaddar, Martin J. Blaser, Subhajyoti De
2023 J jnl
Hierarchical and automated cell-type annotation and inference of cancer cell of origin with Census.
Bioinform.
Bassel Ghaddar, Subhajyoti De
2020 J jnl
Weakly Supervised Deep Nuclei Segmentation Using Partial Points Annotation in Histopathology Images.
CoRR
Hui Qu, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Zhennan Yan, Kang Li, Gregory M. Riedlinger, Subhajyoti De, Shaoting Zhang, Dimitris N. Metaxas
2020 J jnl
Weakly Supervised Deep Nuclei Segmentation Using Partial Points Annotation in Histopathology Images.
IEEE Trans. Medical Imaging
Hui Qu, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Zhennan Yan, Kang Li, Gregory M. Riedlinger, Subhajyoti De, Shaoting Zhang, Dimitris N. Metaxas
2019 — conf
Improving Nuclei/Gland Instance Segmentation in Histopathology Images by Full Resolution Neural Network and Spatial Constrained Loss.
MICCAI (1)
Hui Qu, Zhennan Yan, Gregory M. Riedlinger, Subhajyoti De, Dimitris N. Metaxas
2019 — conf
Joint Segmentation and Fine-Grained Classification of Nuclei in Histopathology Images.
ISBI
Hui Qu, Gregory M. Riedlinger, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Subhajyoti De, Dimitris N. Metaxas
2019 — conf
Weakly Supervised Deep Nuclei Segmentation using Points Annotation in Histopathology Images.
MIDL
Hui Qu, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Gregory M. Riedlinger, Subhajyoti De, Dimitris N. Metaxas
2018 J jnl
Mutational signatures and mutable motifs in cancer genomes.
Briefings Bioinform.
Igor B. Rogozin, Youri I. Pavlov, Alexander Goncearenco, Subhajyoti De, Artem G. Lada, Eugenia Poliakov, Anna R. Panchenko, David N. Cooper
2016 J jnl
IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples.
J. Am. Medical Informatics Assoc.
Jennifer Hintzsche, Jihye Kim, Vinod Kumar Yadav, Carol Amato, Steven E. Robinson, Eric Seelenfreund, Yiqun Shellman, Joshua Wisell, Allison Applegate, Martin McCarter, Neil Box, John Tentler, Subhajyoti De, William A. Robinson, Aik Choon Tan
2016 J jnl
SomVarIUS: somatic variant identification from unpaired tissue samples.
Bioinform.
Kyle S. Smith, Vinod Kumar Yadav, Shanshan Pei, Daniel A. Pollyea, Craig T. Jordan, Subhajyoti De
2015 J jnl
An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples.
Briefings Bioinform.
Vinod Kumar Yadav, Subhajyoti De
2014 J jnl
Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells.
PLoS Comput. Biol.
Ondrej Podlaha, Subhajyoti De, Mithat Gonen, Franziska Michor
2014 J jnl
The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment.
Briefings Bioinform.
Subhajyoti De, Brent S. Pedersen, Katerina J. Kechris
2013 J jnl
CruzDB: software for annotation of genomic intervals with UCSC genome-browser database.
Bioinform.
Brent S. Pedersen, Ivana V. Yang, Subhajyoti De
2009 J jnl
BloodExpress: a database of gene expression in mouse haematopoiesis.
Nucleic Acids Res.
Diego Miranda-Saavedra, Subhajyoti De, Matthew W. B. Trotter, Sarah A. Teichmann, Berthold Göttgens