Stuart L. Moodie

13 papers Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2020 J jnl
Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.
J. Integr. Bioinform.
Lucian P. Smith, Stuart L. Moodie, Frank T. Bergmann, Colin S. Gillespie, Sarah M. Keating, Matthias König, Chris J. Myers, Maciek J. Swat, Darren J. Wilkinson, Michael Hucka
2019 J jnl
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
J. Integr. Bioinform.
Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna
2015 — conf
Implementing a Domain-specific Language for Model-based Drug Development.
EUSPN/ICTH
Natallia Kokash, Stuart L. Moodie, Mike K. Smith, Nick Holford
2015 J jnl
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .
J. Integr. Bioinform.
Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger
2015 J jnl
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
J. Integr. Bioinform.
Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger
2015 J jnl
Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.
J. Integr. Bioinform.
Stuart L. Moodie, Nicolas Le Novère, Emek Demir, Huaiyu Mi, Alice Villéger
2014 J jnl
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
BMC Bioinform.
Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
2014 J jnl
COMBINE archive: One File To Share Them All.
CoRR
Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
2012 J jnl
Software support for SBGN maps: SBGN-ML and LibSBGN.
Bioinform.
Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber
2011 J jnl
Translation from the Quantified Implicit Process Flow Abstraction in SBGN-PD Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway.
Trans. Comp. Sys. Biology
Laurence Loewe, Maria Luisa Guerriero, Steven Watterson, Stuart L. Moodie, Peter Ghazal, Jane Hillston
2009 — conf
Quantifying the implicit process flow abstraction in SBGN-PD diagrams with Bio-PEPA
COMPMOD
Laurence Loewe, Stuart L. Moodie, Jane Hillston
2006 J jnl
A Graphical Notation to describe the Logical Interactions of Biological Pathways.
J. Integr. Bioinform.
Stuart L. Moodie, Anatoly A. Sorokin, Igor Goryanin, Peter Ghazal
2006 J jnl
PDQ Wizard: automated prioritization and characterization of gene and protein lists using biomedical literature.
Bioinform.
G. R. Grimes, T. Q. Wen, Muriel Mewissen, Robert M. Baxter, Stuart L. Moodie, J. S. Beattie, Peter Ghazal