Stuart C. Sealfon

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2023 J jnl
Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.
Nat. Comput. Sci.
Xi Chen, Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D. Nair, Clare M. Miller, Aliza B. Rubenstein, German Nudelman, Alicja Tadych, Chandra L. Theesfeld, Alexandria Vornholt, Mary-Catherine George, Felicia Ruffin, Michael Dagher, Daniel G. Chawla, Alessandra Soares-Schanoski, Rachel R. Spurbeck, Lishomwa C. Ndhlovu, Robert P. Sebra, Steven H. Kleinstein, Andrew G. Letizia, Irene Ramos, Vance G. Fowler, Christopher W. Woods, Elena Zaslavsky, Olga G. Troyanskaya, Stuart C. Sealfon
2023 J jnl
Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.
Nat. Comput. Sci.
Xi Chen, Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D. Nair, Clare M. Miller, Aliza B. Rubenstein, German Nudelman, Alicja Tadych, Chandra L. Theesfeld, Alexandria Vornholt, Mary-Catherine George, Felicia Ruffin, Michael Dagher, Daniel G. Chawla, Alessandra Soares-Schanoski, Rachel R. Spurbeck, Lishomwa C. Ndhlovu, Robert P. Sebra, Steven H. Kleinstein, Andrew G. Letizia, Irene Ramos, Vance G. Fowler, Christopher W. Woods, Elena Zaslavsky, Olga G. Troyanskaya, Stuart C. Sealfon
2018 J jnl
Correction: Elucidation of molecular kinetic schemes from macroscopic traces using system identification.
PLoS Comput. Biol.
Miguel Fribourg, Diomedes E. Logothetis, Javier González-Maeso, Stuart C. Sealfon, Belén Galocha-Iragüen, Fernando Las-Heras Andrés, Vladimir Brezina
2018 J jnl
Tellurium notebooks - An environment for reproducible dynamical modeling in systems biology.
PLoS Comput. Biol.
J. Kyle Medley, Kiri Choi, Matthias König, Lucian P. Smith, Stanley Gu, Joseph L. Hellerstein, Stuart C. Sealfon, Herbert M. Sauro
2017 J jnl
Elucidation of molecular kinetic schemes from macroscopic traces using system identification.
PLoS Comput. Biol.
Miguel Fribourg, Diomedes E. Logothetis, Javier González-Maeso, Stuart C. Sealfon, Belén Galocha-Iragüen, Fernando Las-Heras Andrés, Vladimir Brezina
2016 J jnl
MOCCASIN: converting MATLAB ODE models to SBML.
Bioinform.
Harold F. Gómez, Michael Hucka, Sarah M. Keating, German Nudelman, Dagmar Iber, Stuart C. Sealfon
2015 J jnl
CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations.
Bioinform.
Maria D. Chikina, Elena Zaslavsky, Stuart C. Sealfon
2015 J jnl
Hybrid Bayesian-rank integration approach improves the predictive power of genomic dataset aggregation.
Bioinform.
Marcus A. Badgeley, Stuart C. Sealfon, Maria D. Chikina
2013 J jnl
Noise propagation through extracellular signaling leads to fluctuations in gene expression.
BMC Syst. Biol.
Omar P. Tabbaa, German Nudelman, Stuart C. Sealfon, Fernand Hayot, Ciriyam Jayaprakash
2013 J jnl
Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection.
BMC Bioinform.
Elena Zaslavsky, German Nudelman, Susanna Marquez, Uri Hershberg, Boris M. Hartmann, Juilee Thakar, Stuart C. Sealfon, Steven H. Kleinstein
2012 J jnl
flowPeaks: a fast unsupervised clustering for flow cytometry data via
Bioinform.
Yongchao Ge, Stuart C. Sealfon
2010 J jnl
Misty Mountain clustering: application to fast unsupervised flow cytometry gating.
BMC Bioinform.
István P. Sugár, Stuart C. Sealfon
2010 J jnl
Plato's Cave Algorithm: Inferring Functional Signaling Networks from Early Gene Expression Shadows.
PLoS Comput. Biol.
Yishai Shimoni, Marc Y. Fink, Soon-gang Choi, Stuart C. Sealfon
2010 J jnl
Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebase.
BMC Syst. Biol.
Sonali Patil, Hanna Pincas, Jeremy Seto, German Nudelman, Irina Nudelman, Stuart C. Sealfon
2008 J jnl
Getting Started in Biological Pathway Construction and Analysis.
PLoS Comput. Biol.
Ganesh A. Viswanathan, Jeremy Seto, Sonali Patil, German Nudelman, Stuart C. Sealfon
2007 J jnl
BioPP: a tool for web-publication of biological networks.
BMC Bioinform.
Ganesh A. Viswanathan, German Nudelman, Sonali Patil, Stuart C. Sealfon