Steven A. Hofmeyr

61 papers A* 1A 11B 5C 2Journal 26Unranked 15

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Evolving to Find Optimizations Humans Miss: Using Evolutionary Computation to Improve GPU Code for Bioinformatics Applications. ACM Trans. Evol. Learn. Optim. Jhe-Yu Liou, Muaaz Awan, Kirtus G. Leyba, Petr Sulc, Steven A. Hofmeyr, Carole-Jean Wu, Stephanie Forrest
2024	J	`jnl`	Exabiome: Advancing Microbial Science through Exascale Computing. Comput. Sci. Eng. Steven A. Hofmeyr, Aydin Buluç, Robert Riley, Rob Egan, Oguz Selvitopi, Leonid Oliker, Katherine A. Yelick, Migun Shakya, Brett Youtsey, Ariful Azad
2024	A	`conf`	SIMCoV-GPU: Accelerating an Agent-Based Model for Exascale. HPDC Kirtus G. Leyba, Steven A. Hofmeyr, Stephanie Forrest, Judy L. Cannon, Melanie E. Moses
2023	—	`conf`	Designing Efficient SIMD Kernels for High Performance Sequence Alignment. IPDPS Workshops Doru-Thom Popovici, Muaaz Gul Awan, Giulia Guidi, Rob Egan, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick
2023	B	`conf`	High-Performance Filters for GPUs. PPoPP Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, Prashant Pandey
2023	—	`conf`	Singleton Sieving: Overcoming the Memory/Speed Trade-Off in Exascale ACDA Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, Prashant Pandey
2022	J	`jnl`	High-Performance Filters For GPUs. CoRR Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, Prashant Pandey
2022	—	`conf`	Understanding the Power of Evolutionary Computation for GPU Code Optimization. IISWC Jhe-Yu Liou, Muaaz Awan, Steven A. Hofmeyr, Stephanie Forrest, Carole-Jean Wu
2022	J	`jnl`	Understanding the Power of Evolutionary Computation for GPU Code Optimization. CoRR Jhe-Yu Liou, Muaaz Awan, Steven A. Hofmeyr, Stephanie Forrest, Carole-Jean Wu
2021	A	`conf`	Accelerating large scale SC Muaaz Gul Awan, Steven A. Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe, Leonid Oliker, Katherine A. Yelick
2021	J	`jnl`	Spatially distributed infection increases viral load in a computational model of SARS-CoV-2 lung infection. PLoS Comput. Biol. Melanie E. Moses, Steven A. Hofmeyr, Judy L. Cannon, Akil Andrews, Rebekah Gridley, Monica Hinga, Kirtus G. Leyba, Abigail Pribisova, Vanessa Surjadidjaja, Humayra Tasnim, Stephanie Forrest
2020	J	`jnl`	ADEPT: a domain independent sequence alignment strategy for gpu architectures. BMC Bioinform. Muaaz G. Awan, Jack Deslippe, Aydin Buluç, Oguz Selvitopi, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick
2020	—	`conf`	GPU accelerated partial order multiple sequence alignment for long reads self-correction. IPDPS Workshops Francesco Peverelli, Lorenzo Di Tucci, Marco D. Santambrogio, Nan Ding, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2020	A	`conf`	LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. IPDPS Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2020	J	`jnl`	LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. CoRR Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2020	J	`jnl`	The Parallelism Motifs of Genomic Data Analysis. CoRR Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker
2019	A	`conf`	UPC++: A High-Performance Communication Framework for Asynchronous Computation. IPDPS John Bachan, Scott B. Baden, Steven A. Hofmeyr, Mathias Jacquelin, Amir Kamil, Dan Bonachea, Paul H. Hargrove, Hadia Ahmed
2018	—	`conf`	A Parallel, Energy Efficient Hardware Architecture for the merAligner on FPGA Using Chisel HCL. IPDPS Workshops Lorenzo Di Tucci, Davide Conficconi, Alessandro Comodi, Steven A. Hofmeyr, David Donofrio, Marco D. Santambrogio
2018	J	`jnl`	Enabling power-awareness for the Xen hypervisor. SIGBED Rev. Matteo Ferroni, Juan A. Colmenares, Steven A. Hofmeyr, John Kubiatowicz, Marco D. Santambrogio
2018	B	`conf`	Energy-efficient Application Resource Scheduling using Machine Learning Classifiers. ICPP Connor Imes, Steven A. Hofmeyr, Henry Hoffmann
2018	J	`jnl`	Extreme Scale De Novo Metagenome Assembly. CoRR Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2018	A	`conf`	Extreme scale de novo metagenome assembly. SC Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2017	J	`jnl`	Extreme-Scale De Novo Genome Assembly. CoRR Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
2017	—	`conf`	MerBench: PGAS Benchmarks for High Performance Genome Assembly. PAW@SC Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
2017	—	`conf`	Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. Euro-Par Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
2017	J	`jnl`	Power Consumption Models for Multi-Tenant Server Infrastructures. ACM Trans. Archit. Code Optim. Matteo Ferroni, Andrea Corna, Andrea Damiani, Rolando Brondolin, Juan A. Colmenares, Steven A. Hofmeyr, John Kubiatowicz, Marco D. Santambrogio
2017	—	`conf`	The UPC++ PGAS library for Exascale Computing. PAW@SC John Bachan, Dan Bonachea, Paul Hargrove, Steven A. Hofmeyr, Mathias Jacquelin, Amir Kamil, Brian van Straalen, Scott B. Baden
2016	—	`conf`	Enabling Power-Awareness for the Xen Hypervisor. EWiLi Matteo Ferroni, Juan A. Colmenares, Steven A. Hofmeyr, John Kubiatowicz, Marco D. Santambrogio
2016	J	`jnl`	Hype and heavy tails: A closer look at data breaches. J. Cybersecur. Benjamin Edwards, Steven A. Hofmeyr, Stephanie Forrest
2016	—	`conf`	Time-Sharing Redux for Large-Scale HPC Systems. HPCC/SmartCity/DSS Steven A. Hofmeyr, Costin Iancu, Juan A. Colmenares, Eric Roman, Brian Austin
2015	A	`conf`	Analyzing and Modeling Longitudinal Security Data: Promise and Pitfalls. ACSAC Benjamin Edwards, Steven A. Hofmeyr, Stephanie Forrest, Michel van Eeten
2015	A	`conf`	HipMer: an extreme-scale de novo genome assembler. SC Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven A. Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
2015	—	`conf`	Hype and Heavy Tails: A Closer Look at Data Breaches. WEIS Benjamin Edwards, Steven A. Hofmeyr, Stephanie Forrest
2014	J	`jnl`	The Case for Partitioning Virtual Machines on Multicore Architectures. IEEE Trans. Parallel Distributed Syst. Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu
2013	J	`jnl`	Juggle: addressing extrinsic load imbalances in SPMD applications on multicore computers. Clust. Comput. Steven A. Hofmeyr, Juan A. Colmenares, Costin Iancu, John Kubiatowicz
2013	A*	`conf`	Tessellation: refactoring the OS around explicit resource containers with continuous adaptation. DAC Juan A. Colmenares, Gage Eads, Steven A. Hofmeyr, Sarah Bird, Miquel Moretó, David Chou, Brian Gluzman, Eric Roman, Davide B. Bartolini, Nitesh Mor, Krste Asanovic, John Kubiatowicz
2012	J	`jnl`	Beyond the Blacklist: Modeling Malware Spread and the Effect of Interventions CoRR Benjamin Edwards, Tyler Moore, George Stelle, Steven A. Hofmeyr, Stephanie Forrest
2012	C	`conf`	Beyond the blacklist: modeling malware spread and the effect of interventions. NSPW Benjamin Edwards, Tyler Moore, George Stelle, Steven A. Hofmeyr, Stephanie Forrest
2012	J	`jnl`	Internet Topology over Time CoRR Benjamin Edwards, Steven A. Hofmeyr, George Stelle, Stephanie Forrest
2012	J	`jnl`	Modeling Internet-Scale Policies for Cleaning up Malware CoRR Steven A. Hofmeyr, Tyler Moore, Stephanie Forrest, Benjamin Edwards, George Stelle
2011	B	`conf`	Characterizing the Performance of Parallel Applications on Multi-socket Virtual Machines. CCGRID Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu
2011	A	`conf`	Juggle: proactive load balancing on multicore computers. HPDC Steven A. Hofmeyr, Juan A. Colmenares, Costin Iancu, John Kubiatowicz
2011	—	`conf`	Modeling Internet-Scale Policies for Cleaning up Malware. WEIS Steven A. Hofmeyr, Tyler Moore, Stephanie Forrest, Benjamin Edwards, George Stelle
2011	—	`conf`	Modeling Internet-Scale Policies for Cleaning up Malware. WEIS (Springer Volume) Steven A. Hofmeyr, Tyler Moore, Stephanie Forrest, Benjamin Edwards, George Stelle
2011	A	`conf`	Optimized pre-copy live migration for memory intensive applications. SC Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu, Eric Roman
2011	—	`conf`	Tessellation operating system: Building a real-time, responsive, high-throughput client OS for many-core architectures. Hot Chips Symposium Juan A. Colmenares, Sarah Bird, Gage Eads, Steven A. Hofmeyr, Albert Kim, Rohit Poddar, Hilfi Alkaff, Krste Asanovic, John Kubiatowicz
2010	B	`conf`	Load balancing on speed. PPoPP Steven A. Hofmeyr, Costin Iancu, Filip Blagojevic
2010	A	`conf`	Oversubscription on multicore processors. IPDPS Costin Iancu, Steven A. Hofmeyr, Filip Blagojevic, Yili Zheng
2008	B	`conf`	Runtime optimization of vector operations on large scale SMP clusters. PACT Costin Iancu, Steven A. Hofmeyr
2008	A	`conf`	The Evolution of System-Call Monitoring. ACSAC Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji
2007	—	`ch.`	Why Today. Information Security Management Handbook, 6th ed. Steven A. Hofmeyr
2005	J	`jnl`	Host intrusion prevention: Part of the operating system or on top of the operating system? Comput. Secur. Steven A. Hofmeyr
2004	J	`jnl`	The implications of immunology for secure systems design. Comput. Secur. Steven A. Hofmeyr
2003	J	`jnl`	A New Approach to Security: Learning from Immunology. Inf. Secur. J. A Glob. Perspect. Steven A. Hofmeyr
2003	J	`jnl`	Why Today's Security Technologies Are So Inadequate: History, Implications, and New Approaches. Inf. Secur. J. A Glob. Perspect. Steven A. Hofmeyr
2000	J	`jnl`	Architecture for an Artificial Immune System. Evol. Comput. Steven A. Hofmeyr, Stephanie Forrest
1998	J	`jnl`	Intrusion Detection Using Sequences of System Calls. J. Comput. Secur. Steven A. Hofmeyr, Stephanie Forrest, Anil Somayaji
1997	J	`jnl`	Computer Immunology. Commun. ACM Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji
1997	J	`jnl`	Intrusion Detection via System Call Traces. IEEE Softw. Andrew P. Kosoresow, Steven A. Hofmeyr
1997	C	`conf`	Principles of a computer immune system. NSPW Anil Somayaji, Steven A. Hofmeyr, Stephanie Forrest
1996	—	`conf`	A Sense of Self for Unix Processes. S&P Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji, Thomas A. Longstaff