Steve Horvath

30 papers Journal 24Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
AESurv: autoencoder survival analysis for accurate early prediction of coronary heart disease.
Briefings Bioinform.
Yike Shen, Arce Domingo-Relloso, Allison Kupsco, Marianthi-Anna Kioumourtzoglou, Maria Tellez-Plaza, Jason G. Umans, Amanda M. Fretts, Ying Zhang, Peter F. Schnatz, Ramon Casanova, Lisa Warsinger Martin, Steve Horvath, JoAnn E. Manson, Shelley A Cole, Haotian Wu, Eric A Whitsel, Andrea A. Baccarelli, Ana Navas-Acien, Feng Gao
2024 J jnl
Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV.
Frontiers Bioinform.
Mary E. Sehl, Elizabeth Crabb Breen, Roger Shih, Fengxue Li, Joshua Zhang, Peter Langfelder, Steve Horvath, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Beth D. Jamieson
2024 J jnl
Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV.
Frontiers Bioinform.
Joshua Zhang, Mary E. Sehl, Roger Shih, Elizabeth Crabb Breen, Fengxue Li, Ake T. Lu, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Steve Horvath, Beth D. Jamieson
2024 J jnl
MammalMethylClock R package: software for DNA methylation-based epigenetic clocks in mammals.
Bioinform.
Joseph A. Zoller, Steve Horvath
2023 J jnl
Comparative epigenome analysis using Infinium DNA methylation BeadChips.
Briefings Bioinform.
Wubin Ding, Diljeet Kaur, Steve Horvath, Wanding Zhou
2013 J jnl
Cluster and propensity based approximation of a network.
BMC Syst. Biol.
John M. O. Ranola, Peter Langfelder, Kenneth Lange, Steve Horvath
2013 J jnl
Random generalized linear model: a highly accurate and interpretable ensemble predictor.
BMC Bioinform.
Lin Song, Peter Langfelder, Steve Horvath
2012 J jnl
Comparison of co-expression measures: mutual information, correlation, and model based indices.
BMC Bioinform.
Lin Song, Peter Langfelder, Steve Horvath
2012 J jnl
Distinct Neurogenomic States in Basal Ganglia Subregions Relate Differently to Singing Behavior in Songbirds.
PLoS Comput. Biol.
Austin T. Hilliard, Julie E. Miller, Steve Horvath, Stephanie A. White
2012 J jnl
Network methods for describing sample relationships in genomic datasets: application to Huntington's disease.
BMC Syst. Biol.
Michael C. Oldham, Peter Langfelder, Steve Horvath
2011 J jnl
Gene networks associated with conditional fear in mice identified using a systems genetics approach.
BMC Syst. Biol.
Christopher C. Park, Greg D. Gale, Simone de Jong, Anatole Ghazalpour, Brian J. Bennett, Charles R. Farber, Peter Langfelder, Andy Lin, Arshad H. Khan, Eleazar Eskin, Steve Horvath, Aldons J. Lusis, Roel A. Ophoff, Desmond J. Smith
2011 J jnl
Is My Network Module Preserved and Reproducible?
PLoS Comput. Biol.
Peter Langfelder, Rui Luo, Michael C. Oldham, Steve Horvath
2011 — ch.
Review of Weighted Gene Coexpression Network Analysis.
Handbook of Statistical Bioinformatics
Tova Fuller, Peter Langfelder, Angela P. Presson, Steve Horvath
2011 J jnl
Strategies for aggregating gene expression data: The collapseRows R function.
BMC Bioinform.
Jeremy A. Miller, Chaochao Cai, Peter Langfelder, Daniel H. Geschwind, Sunil M. Kurian, Daniel R. Salomon, Steve Horvath
2010 — conf
Comparing Robust Methods for Defining Directed Networks and Their Hub Nodes.
BIOCOMP
Peter Langfelder, Tova Fuller, Steve Horvath
2010 J jnl
Detecting network modules in fMRI time series: A weighted network analysis approach.
NeuroImage
Jeanette A. Mumford, Steve Horvath, Michael C. Oldham, Peter Langfelder, Daniel H. Geschwind, Russell A. Poldrack
2008 J jnl
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.
Bioinform.
Peter Langfelder, Bin Zhang, Steve Horvath
2008 J jnl
Geometric Interpretation of Gene Coexpression Network Analysis.
PLoS Comput. Biol.
Steve Horvath, Jun Dong
2008 J jnl
Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome.
BMC Syst. Biol.
Angela P. Presson, Eric M. Sobel, Jeanette C. Papp, Charlyn J. Suarez, Toni Whistler, Mangalathu S. Rajeevan, Suzanne D. Vernon, Steve Horvath
2008 J jnl
Using genetic markers to orient the edges in quantitative trait networks: The NEO software.
BMC Syst. Biol.
Jason E. Aten, Tova Fuller, Aldons J. Lusis, Steve Horvath
2008 J jnl
WGCNA: an R package for weighted correlation network analysis.
BMC Bioinform.
Peter Langfelder, Steve Horvath
2007 J jnl
Eigengene networks for studying the relationships between co-expression modules.
BMC Syst. Biol.
Peter Langfelder, Steve Horvath
2007 J jnl
Gene network interconnectedness and the generalized topological overlap measure.
BMC Bioinform.
Andy M. Yip, Steve Horvath
2007 J jnl
Network neighborhood analysis with the multi-node topological overlap measure.
Bioinform.
Ai Li, Steve Horvath
2007 J jnl
Understanding network concepts in modules.
BMC Syst. Biol.
Jun Dong, Steve Horvath
2006 — conf
A Network-Based Gene Screening Approach For Improving the Validation Success of Microarrays.
BIOCOMP
Wei Zhao, Paul Mischel, Marc Carlson, Bin Zhang, Stanley Nelson, Steve Horvath
2006 — conf
The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks.
BIOCOMP
Andy M. Yip, Steve Horvath
2006 — conf
The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis.
BIOCOMP
Ai Li, Steve Horvath
2006 — conf
The Relationship Between Intramodular Connectivity and Gene Significance in Co-Expression Networks.
BIOCOMP
Steve Horvath, Jun Dong, Andy M. Yip
2005 J jnl
Ridge regression based hybrid genetic algorithms for multi-locus quantitative trait mapping.
Int. J. Bioinform. Res. Appl.
Bin Zhang, Steve Horvath