Steve Hoffmann

32 papers C 5Misc 1Journal 21Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells.
Frontiers Bioinform.
Aimer Gutierrez-Diaz, Steve Hoffmann, Juan Carlos Gallego-Gómez, Clara Bermudez-Santana
2023 J jnl
Leveraging quantum computing for dynamic analyses of logical networks in systems biology.
Patterns
Felix M. Weidner, Julian D. Schwab, Sabine Wölk, Felix Rupprecht, Nensi Ikonomi, Silke D. Werle, Steve Hoffmann, Michael Kühl, Hans A. Kestler
2022 J jnl
Locus-specific expression analysis of transposable elements.
Briefings Bioinform.
Robert Schwarz, Philipp Koch, Jeanne Wilbrandt, Steve Hoffmann
2021 J jnl
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Briefings Bioinform.
Gerhard Mayer, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz
2020 — conf
Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile.
BSB
Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann, Andrea Queiroz Maranhão, Marcelo M. Brigido
2018 J jnl
DIEGO: detection of differential alternative splicing using Aitchison's geometry.
Bioinform.
Gero Doose, Stephan H. Bernhart, Rabea Wagener, Steve Hoffmann
2017 J jnl
BAT: Bisulfite Analysis Toolkit.
F1000Research
Helene Kretzmer, Christian Otto, Steve Hoffmann
2017 J jnl
Generalized enhanced suffix array construction in external memory.
Algorithms Mol. Biol.
Felipe A. Louza, Guilherme P. Telles, Steve Hoffmann, Cristina Dutra de Aguiar Ciferri
2017 J jnl
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Nucleic Acids Res.
Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen
2016 J jnl
Read mapping.
it Inf. Technol.
Steve Hoffmann, Peter F. Stadler
2015 J jnl
A simple data-adaptive probabilistic variant calling model.
Algorithms Mol. Biol.
Steve Hoffmann, Peter F. Stadler, Korbinian Strimmer
2014 J jnl
Authoring vs. Configuring Affective Agents for Interactive Storytelling.
Appl. Artif. Intell.
Stefan Rank, Steve Hoffmann, Hans-Georg Struck, Ulrike Spierling, Simon Mayr, Paolo Petta
2014 — —
Genome Informatics for High-Throughput Sequencing Data Analysis: Methods and Applications
Steve Hoffmann
2014 — ch.
Genominformatische Verfahren zur Analyse von Daten der Hochdurchsatzsequenzierung.
Ausgezeichnete Informatikdissertationen
Steve Hoffmann
2014 J jnl
Lacking alignments? The next-generation sequencing mapper segemehl revisited.
Bioinform.
Christian Otto, Peter F. Stadler, Steve Hoffmann
2012 C conf
Creativity in Configuring Affective Agents for Interactive Storytelling.
ICCC
Stefan Rank, Steve Hoffmann, Hans-Georg Struck, Ulrike Spierling, Paolo Petta
2012 J jnl
Fast and sensitive mapping of bisulfite-treated sequencing data.
Bioinform.
Christian Otto, Peter F. Stadler, Steve Hoffmann
2012 J jnl
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.
Bioinform.
David Langenberger, Sachin Pundhir, Claus Thorn Ekstrøm, Peter F. Stadler, Steve Hoffmann, Jan Gorodkin
2011 — conf
"Office Brawl": a conversational storytelling game and its creation process.
Advances in Computer Entertainment Technology
Florian Glock, Anne Junker, Marina Kraus, Christian Lehrian, Alexander Schäfer, Steve Hoffmann, Ulrike Spierling
2011 J jnl
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.
Nucleic Acids Res.
Mario Fasold, David Langenberger, Hans Binder, Peter F. Stadler, Steve Hoffmann
2011 J jnl
Fast local fragment chaining using sum-of-pair gap costs.
Algorithms Mol. Biol.
Christian Otto, Steve Hoffmann, Jan Gorodkin, Peter F. Stadler
2011 C conf
How Authors Benefit from Linear Logic in the Authoring Process of Interactive Storyworlds.
ICIDS
Kim Dung Dang, Steve Hoffmann, Ronan Champagnat, Ulrike Spierling
2011 — conf
MicroRNA or Not MicroRNA?
BSB
David Langenberger, Sebastian Bartschat, Jana Hertel, Steve Hoffmann, Hakim Tafer, Peter F. Stadler
2010 C conf
Exploring Narrative Interpretation and Adaptation for Interactive Story Creation.
ICIDS
Ulrike Spierling, Steve Hoffmann
2010 Misc conf
Identification and Classification of Small RNAs in Transcriptome Sequence Data.
Pacific Symposium on Biocomputing
David Langenberger, Clara Bermudez-Santana, Peter F. Stadler, Steve Hoffmann
2010 J jnl
The primary transcriptome of the major human pathogen
Nat.
Cynthia M. Sharma, Steve Hoffmann, Fabien Darfeuille, Jérémy Reignier, Sven Findeiß, Alexandra Sittka, Sandrine Chabas, Kristin Reiche, Jörg Hackermüller, Richard Reinhardt, Peter F. Stadler, Jörg Vogel
2010 C conf
Tutorial: Introduction to Interactive Story Creation.
ICIDS
Ulrike Spierling, Nicolas Szilas, Steve Hoffmann, Urs Richle
2010 C conf
Workshop: Education in Interactive Digital Storytelling.
ICIDS
Ulrike Spierling, Nicolas Szilas, Steve Hoffmann, Urs Richle
2009 J jnl
Evidence for human microRNA-offset RNAs in small RNA sequencing data.
Bioinform.
David Langenberger, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F. Stadler
2009 J jnl
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures.
PLoS Comput. Biol.
Steve Hoffmann, Christian Otto, Stefan Kurtz, Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller
2009 J jnl
Sequence assembly.
Comput. Biol. Chem.
K. Scheibye-Alsing, Steve Hoffmann, A. Frankel, Peter Jensen, Peter F. Stadler, Y. Mang, Niels Tommerup, M. J. Gilchrist, A.-B. Nygård, Susanna Cirera, Claus B. Jørgensen, Merete Fredholm, Jan Gorodkin
2002 J jnl
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.
BMC Bioinform.
Konrad Büssow, Steve Hoffmann, Volker Sievert