Stephen G. Oliver

36 papers C 1Journal 32Unranked 3
YearRankTypeTitle / Venue / Authors
2021 J jnl
Data intelligence for process performance prediction in biologics manufacturing.
Comput. Chem. Eng.
Nishanthi Gangadharan, David Sewell, Richard Turner, Ray Field, Matthew Cheeks, Stephen G. Oliver, Nigel K. H. Slater, Duygu Dikicioglu
2021 — conf
Extending the Modeling and Analysis Capabilities of Continuous Petri Nets by Flexible Nets.
CDC
Jorge Júlvez, Stephen G. Oliver
2020 J jnl
Steady State Analysis of Flexible Nets.
IEEE Trans. Autom. Control.
Jorge Júlvez, Stephen G. Oliver
2020 — conf
fnyzer: A Python Package for the Analysis of Flexible Nets.
CMSB
Jorge Júlvez, Stephen G. Oliver
2019 J jnl
Flexible Nets: a modeling formalism for dynamic systems with uncertain parameters.
Discret. Event Dyn. Syst.
Jorge Júlvez, Stephen G. Oliver
2019 J jnl
PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information.
Nucleic Acids Res.
Antonia Lock, Kim Rutherford, Midori A. Harris, Jacqueline Hayles, Stephen G. Oliver, Jürg Bähler, Valerie Wood
2018 J jnl
TAMMiCol: Tool for analysis of the morphology of microbial colonies.
PLoS Comput. Biol.
Hayden Tronnolone, Jennifer M. Gardner, Joanna F. Sundstrom, Vladimir Jiranek, Stephen G. Oliver, Benjamin J. Binder
2016 J jnl
CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data.
Bioinform.
Isik Baris Fidaner, Ayca Cankorur-Cetinkaya, Duygu Dikicioglu, Betül Kirdar, Ali Taylan Cemgil, Stephen G. Oliver
2015 J jnl
PomBase 2015: updates to the fission yeast database.
Nucleic Acids Res.
Mark D. McDowall, Midori A. Harris, Antonia Lock, Kim Rutherford, Daniel M. Staines, Jürg Bähler, Paul J. Kersey, Stephen G. Oliver, Valerie Wood
2015 J jnl
Quantifying Two-Dimensional Filamentous and Invasive Growth Spatial Patterns in Yeast Colonies.
PLoS Comput. Biol.
Benjamin J. Binder, Joanna F. Sundstrom, Jennifer M. Gardner, Vladimir Jiranek, Stephen G. Oliver
2015 — conf
The Challenges of Interpreting Phosphoproteomics Data: A Critical View Through the Bioinformatics Lens.
CIBB
Panayotis Vlastaridis, Stephen G. Oliver, Yves Van de Peer, Grigoris D. Amoutzias
2014 J jnl
Canto: an online tool for community literature curation.
Bioinform.
Kim M. Rutherford, Midori A. Harris, Antonia Lock, Stephen G. Oliver, Valerie Wood
2013 J jnl
FYPO: the fission yeast phenotype ontology.
Bioinform.
Midori A. Harris, Antonia Lock, Jürg Bähler, Stephen G. Oliver, Valerie Wood
2012 J jnl
PomBase: a comprehensive online resource for fission yeast.
Nucleic Acids Res.
Valerie Wood, Midori A. Harris, Mark D. McDowall, Kim Rutherford, Brendan W. Vaughan, Daniel M. Staines, Martin Aslett, Antonia Lock, Jürg Bähler, Paul J. Kersey, Stephen G. Oliver
2012 J jnl
The genetic control of growth rate: a systems biology study in yeast.
BMC Syst. Biol.
Pinar Pir, Alex Gutteridge, Jian Wu, Bharat Rash, Douglas B. Kell, Nianshu Zhang, Stephen G. Oliver
2011 J jnl
How yeast re-programmes its transcriptional profile in response to different nutrient impulses.
BMC Syst. Biol.
Duygu Dikicioglu, Muhammed Erkan Karabekmez, Bharat Rash, Pinar Pir, Betül Kirdar, Stephen G. Oliver
2011 J jnl
The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in
Bioinform.
Nicola Bonzanni, Nianshu Zhang, Stephen G. Oliver, Jasmin Fisher
2010 J jnl
Further developments towards a genome-scale metabolic model of yeast.
BMC Syst. Biol.
Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes
2009 J jnl
Information management for high content live cell imaging.
BMC Bioinform.
Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton
2009 J jnl
The Robot Scientist Adam.
Computer
Ross D. King, Jem J. Rowland, Wayne Aubrey, Maria Liakata, Magdalena Markham, Larisa N. Soldatova, Ken E. Whelan, Amanda Clare, Mike Young, Andrew Sparkes, Stephen G. Oliver, Pinar Pir
2008 J jnl
Data capture in bioinformatics: requirements and experiences with Pedro.
BMC Bioinform.
Daniel Jameson, Kevin L. Garwood, Christopher Garwood, Tim Booth, Pinar Alper, Stephen G. Oliver, Norman W. Paton
2008 J jnl
ISPIDER Central: an integrated database web-server for proteomics.
Nucleic Acids Res.
Jennifer A. Siepen, Khalid Belhajjame, Julian N. Selley, Suzanne M. Embury, Norman W. Paton, Carole A. Goble, Stephen G. Oliver, Robert Stevens, Lucas Zamboulis, Nigel J. Martin, Alexandra Poulovassilis, Philip Jones, Richard G. Côté, Henning Hermjakob, Melissa M. Pentony, David T. Jones, Christine A. Orengo, Simon J. Hubbard
2008 J jnl
Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
BMC Bioinform.
Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell
2007 J jnl
A Methodology for Comparative Functional Genomics.
J. Integr. Bioinform.
Intikhab Alam, Mike Cornell, Darren M. Soanes, Cornelia Hedeler, Han Min Wong, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver, Norman W. Paton
2007 J jnl
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
BMC Syst. Biol.
Grigoris D. Amoutzias, Elgar Pichler, Nina Mian, David De Graaf, Anastasia Imsiridou, Marc Robinson-Rechavi, Erich Bornberg-Bauer, David L. Robertson, Stephen G. Oliver
2007 J jnl
Similarity in expression accounts for correlated evolution of interacting proteins.
BMC Syst. Biol.
Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson
2006 J jnl
Integrative investigation of metabolic and transcriptomic data.
BMC Bioinform.
Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Stephen G. Oliver
2006 J jnl
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics.
BMC Bioinform.
Irena Spasic, Warwick B. Dunn, Giles Velarde, Andy Tseng, Helen Jenkins, Nigel Hardy, Stephen G. Oliver, Douglas B. Kell
2006 J jnl
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it.
BMC Bioinform.
Kevin L. Garwood, Christopher Garwood, Cornelia Hedeler, Tony Griffiths, Neil Swainston, Stephen G. Oliver, Norman W. Paton
2004 J jnl
CADRE: the Central Aspergillus Data REpository.
Nucleic Acids Res.
J. E. Mabey, M. J. Anderson, Peter F. Giles, Crispin J. Miller, Terri K. Attwood, Norman W. Paton, Erich Bornberg-Bauer, G. D. Robson, Stephen G. Oliver, David W. Denning
2004 J jnl
Pedro: a configurable data entry tool for XML.
Bioinform.
Kevin L. Garwood, Chris F. Taylor, Kai J. Runte, Andy Brass, Stephen G. Oliver, Norman W. Paton
2003 J jnl
SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences.
Nucleic Acids Res.
Paul E. Boardman, Stephen G. Oliver, Simon J. Hubbard
2001 J jnl
Combining Inductive Logic Programming, Active Learning and Robotics to Discover the Function of Genes.
Electron. Trans. Artif. Intell.
Christopher H. Bryant, Stephen H. Muggleton, Stephen G. Oliver, Douglas B. Kell, Philip G. K. Reiser, Ross D. King
2001 J jnl
Developing a Logical Model of Yeast Metabolism.
Electron. Trans. Artif. Intell.
Philip G. K. Reiser, Ross D. King, Douglas B. Kell, Stephen H. Muggleton, Christopher H. Bryant, Stephen G. Oliver
2001 C conf
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data.
BIBE
Mike Cornell, Norman W. Paton, Shengli Wu, Carole A. Goble, Crispin J. Miller, Paul Kirby, Karen Eilbeck, Andy Brass, Andrew Hayes, Stephen G. Oliver
2000 J jnl
Conceptual modelling of genomic information.
Bioinform.
Norman W. Paton, Shakeel A. Khan, Andrew Hayes, Fouzia Moussouni, Andy Brass, Karen Eilbeck, Carole A. Goble, Simon J. Hubbard, Stephen G. Oliver