Stephen F. Altschul

22 papers A 1C 2Journal 17Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
eCOMPASS: evaluative comparison of multiple protein alignments by statistical score.
Bioinform.
Andrew F. Neuwald, Bryan D. Kolaczkowski, Stephen F. Altschul
2018 J jnl
Initial Cluster Analysis.
J. Comput. Biol.
Stephen F. Altschul, Andrew F. Neuwald
2018 J jnl
Outlier detection in BLAST hits.
Algorithms Mol. Biol.
Nidhi Shah, Stephen F. Altschul, Mihai Pop
2018 J jnl
Statistical investigations of protein residue direct couplings.
PLoS Comput. Biol.
Andrew F. Neuwald, Stephen F. Altschul
2017 C conf
Outlier Detection in BLAST Hits.
WABI
Nidhi Shah, Stephen F. Altschul, Mihai Pop
2016 J jnl
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties.
PLoS Comput. Biol.
Andrew F. Neuwald, Stephen F. Altschul
2016 J jnl
Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.
PLoS Comput. Biol.
Andrew F. Neuwald, Stephen F. Altschul
2015 J jnl
Log-odds sequence logos.
Bioinform.
Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul
2013 J jnl
Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space.
J. Comput. Biol.
Viet-An Nguyen, Jordan L. Boyd-Graber, Stephen F. Altschul
2011 J jnl
An assessment of substitution scores for protein profile-profile comparison.
Bioinform.
Xugang Ye, Guoli Wang, Stephen F. Altschul
2011 J jnl
On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison.
J. Comput. Biol.
Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul
2011 J jnl
The Complexity of the Dirichlet Model for Multiple Alignment Data.
J. Comput. Biol.
Yi-Kuo Yu, Stephen F. Altschul
2010 J jnl
Compositional Adjustment of Dirichlet Mixture Priors.
J. Comput. Biol.
Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul
2010 J jnl
The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment.
PLoS Comput. Biol.
Stephen F. Altschul, John C. Wootton, Elena Zaslavsky, Yi-Kuo Yu
2008 — ch.
Local Alignment (with Affine Gap Weights).
Encyclopedia of Algorithms
Stephen F. Altschul, Bruce W. Erickson, Henry Leung
2008 A conf
The effectiveness of position- and composition-specific gap costs for protein similarity searches.
ISMB
Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu
2005 J jnl
A structure-based method for protein sequence alignment.
Bioinform.
Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant
2005 J jnl
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.
Bioinform.
Yi-Kuo Yu, Stephen F. Altschul
1999 J jnl
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
Bioinform.
Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul
1994 — conf
A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences.
HICSS (5)
Charles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu
1991 C conf
BioSCAN: A VLSI-Based System for Biosequence Analysis.
ICCD
C. Thomas White, Raj K. Singh, Peter B. Reintjes, Jordan Lampe, Bruce W. Erickson, Wayne D. Dettloff, Vernon L. Chi, Stephen F. Altschul
1989 J jnl
Leaf Pairs and Tree Dissections.
SIAM J. Discret. Math.
Stephen F. Altschul