Stephen D. Larson

17 papers C 1Journal 9Unranked 6
YearRankTypeTitle / Venue / Authors
2016 J jnl
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue.
Adv. Eng. Softw.
Andrey Palyanov, Sergey Khayrulin, Stephen D. Larson
2016 J jnl
Unit testing, model validation, and biological simulation.
F1000Research
Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, S. Vahid Ghayoomie, Stephen D. Larson, Richard C. Gerkin
2015 J jnl
Unit Testing, Model Validation, and Biological Simulation.
CoRR
Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, Vahid Ghayoomi, Richard C. Gerkin, Stephen D. Larson
2014 J jnl
OpenWorm: an open-science approach to modeling Caenorhabditis elegans.
Frontiers Comput. Neurosci.
Balazs Szigeti, Padraig Gleeson, Michael Vella, Sergey Khayrulin, Andrey Palyanov, Jim Hokanson, Michael Currie, Matteo Cantarelli, Giovanni Idili, Stephen D. Larson
2013 J jnl
NeuroLex.org: an online framework for neuroscience knowledge.
Frontiers Neuroinformatics
Stephen D. Larson, Maryann E. Martone
2012 C conf
Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience.
FOIS
Fahim T. Imam, Stephen D. Larson, Anita E. Bandrowski, Jeffrey S. Grethe, Amarnath Gupta, Maryann E. Martone
2012 J jnl
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment.
Silico Biol.
Andrey Palyanov, Sergey Khayrulin, Stephen D. Larson, Alexander Dibert
2011 — conf
An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases.
ICBO
Chris Mungall, David Anderson, Anita E. Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph W. Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa A. Haendel
2011 J jnl
Digital Atlasing and Standardization in the Mouse Brain.
PLoS Comput. Biol.
Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons J. Verbeek, Ilya Zaslavsky, Jyl Boline
2011 — conf
NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement.
ICBO
Fahim T. Imam, Stephen D. Larson, Jeffrey S. Grethe, Amarnath Gupta, Anita E. Bandrowski, Maryann E. Martone
2009 — conf
NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology.
SWAT4LS
Stephen D. Larson, Sarah Maynard, Fahim T. Imam, Maryann E. Martone
2008 J jnl
The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience.
Neuroinformatics
William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe, Amarnath Gupta, Christine Fennema-Notestine, Angela R. Laird, Stephen D. Larson, Daniel L. Rubin, Gordon M. Shepherd, Jessica A. Turner, Maryann E. Martone
2008 — ch.
The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data.
Anatomy Ontologies for Bioinformatics
Maryann E. Martone, Ilya Zaslavsky, Amarnath Gupta, Asif Memon, Joshua Tran, Willy Wong, Lisa Fong, Stephen D. Larson, Mark H. Ellisman
2007 J jnl
A formal ontology of subcellular neuroanatomy.
Frontiers Neuroinformatics
Stephen D. Larson, Lisa Fong, Amarnath Gupta, Christopher Condit, William J. Bug, Maryann E. Martone
2007 — conf
An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy.
OWLED
Lisa Fong, Stephen D. Larson, Amarnath Gupta, Christopher Condit, William J. Bug, Li Chen, Ruth West, Stephan Lamont, Masako Terada, Maryann E. Martone
2007 — conf
Rule-Based Reasoning With A Multi-Scale Neuroanatomical Ontology.
OWLED
Stephen D. Larson, Maryann E. Martone
2007 — conf
Toward an Ontological Database for Subcellular Neuroanatomy.
ER Workshops
Amarnath Gupta, Stephen D. Larson, Christopher Condit, Sandeep Gupta, Lisa Fong, Li Chen, Maryann E. Martone