Stephen B. Johnson

90 papers A 1Misc 40Journal 37Unranked 11

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	An architecture for research computing in health to support clinical and translational investigators with electronic patient data. J. Am. Medical Informatics Assoc. Thomas R. Campion Jr., Evan Sholle, Jyotishman Pathak, Stephen B. Johnson, John P. Leonard, Curtis L. Cole
2021	J	`jnl`	The national landscape of culminating experiences in master's programs in health and biomedical informatics. J. Am. Medical Informatics Assoc. Suzanne Morrison Cox, Stephen B. Johnson, Eva Shiu, Sue Boren
2020	Misc	`conf`	The Impact of Model and Tokenization Method Selection on a Deep Learning Classifier on Medical Text. AMIA Juan D. Irizarry-Cole, Stephen B. Johnson, Zane Dennis
2019	Misc	`conf`	Educational Communities in the Academic Forum: Sharing Knowledge and Promoting Standards. AMIA Stephen B. Johnson, Saif S. Khairat, Suzanne Austin Boren, Vishnu Mohan, Eva LaVerne Manos, William R. Hersh
2019	J	`jnl`	Rethinking System Health Management. CoRR Edward Balaban, Stephen B. Johnson, Mykel J. Kochenderfer
2019	J	`jnl`	Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation. J. Am. Medical Informatics Assoc. Evan Sholle, Laura C. Pinheiro, Prakash Adekkanattu, Marcos Davila, Stephen B. Johnson, Jyotishman Pathak, Sanjai Sinha, Cassidie Li, Stasi A. Lubansky, Monika M. Safford, Thomas R. Campion Jr.
2019	J	`jnl`	Unifying System Health Management and Automated Decision Making. J. Artif. Intell. Res. Edward Balaban, Stephen B. Johnson, Mykel J. Kochenderfer
2018	J	`jnl`	AMIA Board White Paper: AMIA 2017 core competencies for applied health informatics education at the master's degree level. J. Am. Medical Informatics Assoc. Annette L. Valenta, Eta S. Berner, Suzanne Austin Boren, Gloria J. Deckard, Christina Eldredge, Douglas B. Fridsma, Cynthia S. Gadd, Yang Gong, Todd R. Johnson, Josette Jones, E. LaVerne Manos, Kirk T. Phillips, Nancy K. Roderer, Douglas Rosendale, Anne M. Turner, Günter Tusch, Jeffrey J. Williamson, Stephen B. Johnson
2018	Misc	`conf`	Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes. AMIA Prakash Adekkanattu, Evan Sholle, Joseph J. DeFerio, Jyotishman Pathak, Stephen B. Johnson, Thomas R. Campion Jr.
2017	J	`jnl`	Navigation in the electronic health record: A review of the safety and usability literature. J. Biomed. Informatics Lisette C. Roman, Jessica S. Ancker, Stephen B. Johnson, Yalini Senathirajah
2017	Misc	`conf`	Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers. AMIA Evan Sholle, Joseph Kabariti, Stephen B. Johnson, John P. Leonard, Jyotishman Pathak, Vinay I. Varughese, Curtis L. Cole, Thomas R. Campion Jr.
2017	—	`conf`	Understanding the Role of Technology for Screening Participants in Clinical Studies. CRI En-Ju D. Lin, Stephen B. Johnson, Chaitanya Shivade, Peter J. Embí, Albert M. Lai
2016	J	`jnl`	Data management in clinical research: Synthesizing stakeholder perspectives. J. Biomed. Informatics Stephen B. Johnson, Frank J. Farach, Kevin A. Pelphrey, Leon Rozenblit
2016	Misc	`conf`	Designing an evaluation methods course in health informatics. AMIA Jessica S. Ancker, Stephen B. Johnson
2015	Misc	`conf`	Health Informatics Graduate Program Accreditation: CAHIIM Process and Standards Update. AMIA Judith J. Warren, Stephen B. Johnson, Suzanne Austin Boren, Stuart M. Speedie, Günter Tusch
2014	J	`jnl`	A review of approaches to identifying patient phenotype cohorts using electronic health records. J. Am. Medical Informatics Assoc. Chaitanya P. Shivade, Preethi Raghavan, Eric Fosler-Lussier, Peter J. Embí, Noémie Elhadad, Stephen B. Johnson, Albert M. Lai
2014	Misc	`conf`	An Institutional Strategy to Support Clinical Research with Centrally Managed Custom Data Repositories. AMIA Stephen B. Johnson, Thomas R. Campion Jr., Nonie E. Pegoraro, Leon Rozenblit, Charles Tirrell, Curt Cole
2014	J	`jnl`	Associating co-authorship patterns with publications in high-impact journals. J. Biomed. Informatics Michael E. Bales, Daniel C. Dine, Jacqueline A. Merrill, Stephen B. Johnson, Suzanne Bakken, Chunhua Weng
2014	J	`jnl`	Automatic generation of investigator bibliographies for institutional research networking systems. J. Biomed. Informatics Stephen B. Johnson, Michael E. Bales, Daniel Dine, Suzanne Bakken, Paul J. Albert, Chunhua Weng
2014	—	`conf`	Towards Symbiosis in Knowledge Representation and Natural Language Processing for Structuring Clinical Practice Guidelines. Nursing Informatics Chunhua Weng, Philip R. O. Payne, Mark Velez, Stephen B. Johnson, Suzanne Bakken
2013	J	`jnl`	Health information exchange system usage patterns in three communities: Practice sites, users, patients, and data. Int. J. Medical Informatics Thomas R. Campion Jr., Alison Edwards, Stephen B. Johnson, Rainu Kaushal
2012	Misc	`conf`	Barriers to and Facilitators of Community-Based Health Information Technology Implementation. AMIA Thomas R. Campion Jr., Lisa M. Kern, Alison Edwards, Renny Thomas, Stephen B. Johnson, Rainu Kaushal
2011	J	`jnl`	EliXR: an approach to eligibility criteria extraction and representation. J. Am. Medical Informatics Assoc. Chunhua Weng, Xiaoying Wu, Zhihui Luo, Mary Regina Boland, Dimitri Theodoratos, Stephen B. Johnson
2011	—	`conf`	Facilitating the Iterative Design of Informatics Tools to Advance the Science of Autism. MIE David R. Kaufman, Patrick Cronin, Leon Rozenblit, David Voccola, Amanda Horton, Alisabeth Shine, Stephen B. Johnson
2010	J	`jnl`	Using global unique identifiers to link autism collections. J. Am. Medical Informatics Assoc. Stephen B. Johnson, Glen Whitney, Matthew J. McAuliffe, Hailong Wang, Evan S. McCreedy, Leon Rozenblit, Clark C. Evans
2009	J	`jnl`	Case Report: Iterative Evaluation of the Health Level 7 - Logical Observation Identifiers Names and Codes Clinical Document Ontology for Representing Clinical Document Names: A Case Report. J. Am. Medical Informatics Assoc. Sookyung Hyun, Jason S. Shapiro, Genevieve B. Melton, Cara Schlegel, Peter D. Stetson, Stephen B. Johnson, Suzanne Bakken
2009	J	`jnl`	Development and evaluation of nursing user interface screens using multiple methods. J. Biomed. Informatics Sookyung Hyun, Stephen B. Johnson, Peter D. Stetson, Suzanne Bakken
2009	Misc	`conf`	Evaluation of a Prototype Search and Visualization System for Exploring Scientific Communities. AMIA Michael E. Bales, David R. Kaufman, Stephen B. Johnson
2009	J	`jnl`	Research Paper: Voice Capture of Medical Residents' Clinical Information Needs During an Inpatient Rotation. J. Am. Medical Informatics Assoc. Herbert S. Chase, David R. Kaufman, Stephen B. Johnson, Eneida A. Mendonça
2008	J	`jnl`	A multi-level model of information seeking in the clinical domain. J. Biomed. Informatics Peter W. Hung, Stephen B. Johnson, David R. Kaufman, Eneida A. Mendonça
2008	Misc	`conf`	Content and Structure of Clinical Problem Lists: A Corpus Analysis. AMIA Tielman Van Vleck, Adam B. Wilcox, Peter D. Stetson, Stephen B. Johnson, Noémie Elhadad
2008	J	`jnl`	Model Formulation: An Electronic Health Record Based on Structured Narrative. J. Am. Medical Informatics Assoc. Stephen B. Johnson, Suzanne Bakken, Daniel Dine, Sookyung Hyun, Eneida A. Mendonça, Frances P. Morrison, Tiffani J. Bright, Tielman Van Vleck, Jesse O. Wrenn, Peter D. Stetson
2008	Misc	`conf`	Re-engineering Opportunities in Clinical Research using Workflow Analysis in Community Practice Settings. AMIA Sharib A. Khan, Rita Kukafka, J. Thomas Bigger, Stephen B. Johnson
2008	J	`jnl`	Research Paper: Preliminary Development of the Physician Documentation Quality Instrument. J. Am. Medical Informatics Assoc. Peter D. Stetson, Frances P. Morrison, Suzanne Bakken, Stephen B. Johnson
2007	—	`conf`	A Day in the Life of a Clinical Research Coordinator: Observations from Community Practice Settings. MedInfo Sharib A. Khan, Rita Kukafka, Philip R. O. Payne, J. Thomas Bigger, Stephen B. Johnson
2007	Misc	`conf`	An Unsupervised Machine Learning Approach to Segmentation of Clinician-Entered Free Text. AMIA Jesse O. Wrenn, Peter D. Stetson, Stephen B. Johnson
2007	Misc	`conf`	Assessing Data Relevance For Automated Generation Of A Clinical Summary. AMIA Tielman Van Vleck, Daniel M. Stein, Peter D. Stetson, Stephen B. Johnson
2007	J	`jnl`	Bridging the gap between biological and clinical informatics in a graduate training program. J. Biomed. Informatics Stephen B. Johnson, Richard A. Friedman
2007	J	`jnl`	Conceptual knowledge acquisition in biomedicine: A methodological review. J. Biomed. Informatics Philip R. O. Payne, Eneida A. Mendonça, Stephen B. Johnson, Justin Starren
2007	J	`jnl`	Research Paper: Topological Analysis of Large-scale Biomedical Terminology Structures. J. Am. Medical Informatics Assoc. Michael E. Bales, Yves A. Lussier, Stephen B. Johnson
2007	Misc	`conf`	Signout: A Collaborative Document with Implications for the Future of Clinical Information Systems. AMIA Daniel M. Stein, Jesse O. Wrenn, Stephen B. Johnson, Peter D. Stetson
2006	J	`jnl`	Graph theoretic modeling of large-scale semantic networks. J. Biomed. Informatics Michael E. Bales, Stephen B. Johnson
2006	Misc	`conf`	Heuristic Evaluation of eNote: an Electronic Notes System. AMIA Tiffani J. Bright, Suzanne Bakken, Stephen B. Johnson
2006	Misc	`conf`	Modeling Clinical Trials Workflow in Community Practice Settings. AMIA Sharib A. Khan, Philip R. O. Payne, Stephen B. Johnson, J. Thomas Bigger, Rita Kukafka
2005	Misc	`conf`	Analyzing the Structure and Content of Public Health Messages. AMIA Frances P. Morrison, Rita Kukafka, Stephen B. Johnson
2005	Misc	`conf`	Clinicians' Perceptions of Usability of eNote. AMIA Janet P. Haas, Suzanne Bakken, Tiffani J. Bright, Genevieve B. Melton, Peter D. Stetson, Stephen B. Johnson
2005	Misc	`conf`	Document Ontology: Supporting Narrative Documents in Electronic Health Records. AMIA Jason S. Shapiro, Suzanne Bakken, Sookyung Hyun, Genevieve B. Melton, Cara Schlegel, Stephen B. Johnson
2005	J	`jnl`	ISO reference terminology models for nursing: Applicability for natural language processing of nursing narratives. Int. J. Medical Informatics Suzanne Bakken, Sookyung Hyun, Carol Friedman, Stephen B. Johnson
2005	J	`jnl`	Model Formulation: Modeling Electronic Discharge Summaries as a Simple Temporal Constraint Satisfaction Problem. J. Am. Medical Informatics Assoc. George Hripcsak, Li Zhou, Simon Parsons, Amar K. Das, Stephen B. Johnson
2004	—	`conf`	A Comparison of Semantic Categories of the ISO Reference Terminology Models for Nursing and the MedLEE Natural Language Processing System. MedInfo Suzanne Bakken, Sookyung Hyun, Carol Friedman, Stephen B. Johnson
2004	—	`conf`	Integrating Public Health and Computer Science Theoretical Perspectives for Developing Tailored Health Messages. AAAI Technical Report (4) Rita Kukafka, Frances P. Morrison, Stephen B. Johnson
2004	—	`conf`	Scenario-based Assessment of Physicians' Information Needs. MedInfo Yoon-Ho Seol, David R. Kaufman, Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson
2003	Misc	`conf`	A Framework for the Biomedical Informatics Curriculum. AMIA Stephen B. Johnson
2003	Misc	`conf`	A Native XML Database Design for Clinical Document Research. AMIA Stephen B. Johnson, David A. Campbell, Michael Krauthammer, P. Karina Tulipano, Eneida A. Mendonça, Carol Friedman, George Hripcsak
2003	Misc	`conf`	Automatic Learning of the Morphology of Medical Language using Information Compression. AMIA Shamim Mollah, Stephen B. Johnson
2003	J	`jnl`	Grounding a new information technology implementation framework in behavioral science: a systematic analysis of the literature on IT use. J. Biomed. Informatics Rita Kukafka, Stephen B. Johnson, Allison Linfante, John P. Allegrante
2003	Misc	`conf`	Natural Language Processing Challenges in HIV/AIDS Clinic Notes. AMIA Sookyung Hyun, Suzanne Bakken, Carol Friedman, Stephen B. Johnson
2002	—	`conf`	A transformational-based learner for dependency grammars in discharge summaries. ACL Workshop on Natural Language Processing in the Biomedical Domain David A. Campbell, Stephen B. Johnson
2002	—	`conf`	Analyzing the Semantics of patient data to rank records of literature retrieval. ACL Workshop on Natural Language Processing in the Biomedical Domain Eneida A. Mendonça, Stephen B. Johnson, Yoon-Ho Seol, James J. Cimino
2002	Misc	`conf`	Knowledge Acquisition of Generic Queries for Information Retrieval. AMIA Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino
2002	Misc	`conf`	Representing nested semantic information in a linear string of text using XML. AMIA Michael Krauthammer, Stephen B. Johnson, George Hripcsak, David A. Campbell, Carol Friedman
2002	J	`jnl`	Research Paper: Automatic Resolution of Ambiguous Terms Based on Machine Learning and Conceptual Relations in the UMLS. J. Am. Medical Informatics Assoc. Hongfang Liu, Stephen B. Johnson, Carol Friedman
2002	Misc	`conf`	The cognitive demands of an innovative query user interface. AMIA Di Wang, David R. Kaufman, Eneida A. Mendonça, Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino
2002	Misc	`conf`	The sublanguage of cross-coverage. AMIA Peter D. Stetson, Stephen B. Johnson, Matthew Scotch, George Hripcsak
2002	Misc	`conf`	Using Patient Data to Rank Records of Literature Retrieval. AMIA Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson
2001	J	`jnl`	Accessing Heterogeneous Sources of Evidence to Answer Clinical Questions. J. Biomed. Informatics Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson, Yoon-Ho Seol
2001	Misc	`conf`	Comparing syntactic complexity in medical and non-medical corpora. AMIA David A. Campbell, Stephen B. Johnson
2001	Misc	`conf`	Conceptual Guidance in Information Retrieval. AMIA Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino
2001	Misc	`conf`	Evaluating the UMLS as a source of lexical knowledge for medical language processing. AMIA Carol Friedman, Hongfang Liu, Lyudmila Shagina, Stephen B. Johnson, George Hripcsak
2001	—	`conf`	GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman
2001	—	`conf`	Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge. MedInfo Robert H. Baud, Stephen B. Johnson, Christopher G. Chute, Olivier Bodenreider, Jeremy Rogers, Anita Burgun
2001	Misc	`conf`	Using narrative reports to support a digital library. AMIA Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson
2000	Misc	`conf`	Generic data modeling for home telemonitoring of chronically ill patients. AMIA Jinsong Cai, Stephen B. Johnson, George Hripcsak
2000	Misc	`conf`	Knowledge Sharing in the Construction of an Anatomical Navigational Ontology. AMIA Michael Krauthammer, Nina Wacholder, Stephen B. Johnson, Gai Elhanan, Pat Molholt
2000	J	`jnl`	Review: An Object-oriented Taxonomy of Medical Data Presentations. J. Am. Medical Informatics Assoc. Justin Starren, Stephen B. Johnson
1999	Misc	`conf`	A technique for semantic classification of unknown words using UMLS resources. AMIA David A. Campbell, Stephen B. Johnson
1999	Misc	`conf`	Extended SQL for manipulating clinical warehouse data. AMIA Stephen B. Johnson, Damianos Chatziantoniou
1999	Misc	`conf`	New Dogs for Old Tricks: Finite State Modeling and XML for Access to Legacy Systems. AMIA Justin Starren, Stephen B. Johnson
1999	J	`jnl`	Research Paper: A Semantic Lexicon for Medical Language Processing. J. Am. Medical Informatics Assoc. Stephen B. Johnson
1999	Misc	`conf`	Security architecture for multi-site patient records research. AMIA Fred M. Behlen, Stephen B. Johnson
1999	Misc	`conf`	Use of the Extensible Stylesheet Language (XSL) for medical data transformation. AMIA Yoon-Ho Seol, Stephen B. Johnson, Justin B. Starren
1999	J	`jnl`	White Paper: Multicenter Patient Records Research: Security Policies and Tools. J. Am. Medical Informatics Assoc. Fred M. Behlen, Stephen B. Johnson
1997	Misc	`conf`	Generic database design for patient management information. AMIA Stephen B. Johnson, T. Paul, A. Khenina
1996	J	`jnl`	Model Formulation: Generic Data Modeling for Clinical Rrepositories. J. Am. Medical Informatics Assoc. Stephen B. Johnson
1995	J	`jnl`	Natural language processing in an operational clinical information system. Nat. Lang. Eng. Carol Friedman, George Hripcsak, William DuMouchel, Stephen B. Johnson, Paul D. Clayton
1995	A	`conf`	Two Applications of Statistical Modelling to Natural Language Processing. AISTATS William DuMouchel, Carol Friedman, George Hripcsak, Stephen B. Johnson, Paul D. Clayton
1994	J	`jnl`	Research Paper: A General Natural-language Text Processor for Clinical Radiology. J. Am. Medical Informatics Assoc. Carol Friedman, Philip O. Alderson, John H. M. Austin, James J. Cimino, Stephen B. Johnson
1994	J	`jnl`	Research Paper: A Schema for Representing Medical Language Applied to Clinical Radiology. J. Am. Medical Informatics Assoc. Carol Friedman, James J. Cimino, Stephen B. Johnson
1994	J	`jnl`	Research Paper: Knowledge-based Approaches to the Maintenance of a Large Controlled Medical Terminology. J. Am. Medical Informatics Assoc. James J. Cimino, Paul D. Clayton, George Hripcsak, Stephen B. Johnson
1987	—	`—`	An Analyzer for the Information Content of Sentences (Semantics). Stephen B. Johnson