Stephane Rombauts

12 papers B 1Journal 11
YearRankTypeTitle / Venue / Authors
2024 J jnl
Scywalker: scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing.
Bioinform.
Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems, Lara De Deyn, Lena Duchateau, Carolin Grones, Thomas Eekhout, Tim De Pooter, Geert Joris, Stephane Rombauts, Bert De Rybel, Rosa Rademakers, Frank Van Breusegem, Mojca Strazisar, Kristel Sleegers, Wouter De Coster
2017 J jnl
OMSim: a simulator for optical map data.
Bioinform.
Giles Miclotte, Stéphane Plaisance, Stephane Rombauts, Yves Van de Peer, Pieter Audenaert, Jan Fostier
2016 J jnl
Jabba: hybrid error correction for long sequencing reads.
Algorithms Mol. Biol.
Giles Miclotte, Mahdi Heydari, Piet Demeester, Stephane Rombauts, Yves Van de Peer, Pieter Audenaert, Jan Fostier
2005 J jnl
GeneFarm, structural and functional annotation of
Nucleic Acids Res.
Sébastien Aubourg, Véronique Brunaud, Clémence Bruyère, J. Mark Cock, Richard Cooke, Annick Cottet, Arnaud Couloux, Patrice Déhais, Gilbert Deléage, Aymeric Duclert, Manuel Echeverria, Aimée Eschbach, Denis Falconet, Ghislain Filippi, Christine Gaspin, Christophe Geourjon, Jean-Michel Grienenberger, Guy Houlné, Elisabeth Jamet, Frédéric Lechauve, Olivier Leleu, Philippe Leroy, Régis Mache, Christian Meyer, Hafed Nedjari, Ioan Negrutiu, Valérie Orsini, Eric Peyretaillade, Cyril Pommier, Jeroen Raes, Jean-Loup Risler, Stéphane Rivière, Stephane Rombauts, Pierre Rouzé, Michel Schneider, Philippe Schwob, Ian Small, Ghislain Soumayet-Kampetenga, Darko Stankovski, Claire Toffano, Michael Tognolli, Michel Caboche, Alain Lecharny
2003 J jnl
AFLPinSilico, simulating AFLP fingerprints.
Bioinform.
Stephane Rombauts, Yves Van de Peer, Pierre Rouzé
2002 J jnl
A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes.
J. Comput. Biol.
Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
2002 J jnl
INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling.
Bioinform.
Gert Thijs, Yves Moreau, Frank De Smet, Janick Mathys, Magali Lescot, Stephane Rombauts, Pierre Rouzé, Bart De Moor, Kathleen Marchal
2002 J jnl
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.
Nucleic Acids Res.
Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts
2001 B conf
A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes.
RECOMB
Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
2001 J jnl
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.
Bioinform.
Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
1999 J jnl
Evaluation of gene prediction software using a genomic data set: application to <$O_SSF>Arabidopsis thaliana<$C_SSF>sequences.
Bioinform.
Nathalie Pavy, Stephane Rombauts, Patrice Déhais, Catherine Mathé, Ramana V. Davuluri, Philippe Leroy, Pierre Rouzé
1999 J jnl
PlantCARE, a plant cis-acting regulatory element database.
Nucleic Acids Res.
Stephane Rombauts, Patrice Déhais, Marc Van Montagu, Pierre Rouzé