Stephan H. Bernhart

20 papers Journal 15Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
TREMSUCS-TCGA - an integrated workflow for the identification of biomarkers for treatment success.
J. Integr. Bioinform.
Gábor Balogh, Natasha Jorge, Célia Dupain, Maud Kamal, Nicolas Servant, Christophe Le Tourneau, Peter F. Stadler, Stephan H. Bernhart
2020 J jnl
A probabilistic version of Sankoff's maximum parsimony algorithm.
J. Bioinform. Comput. Biol.
Gábor Balogh, Stephan H. Bernhart, Peter F. Stadler, Jana Schor
2018 J jnl
DIEGO: detection of differential alternative splicing using Aitchison's geometry.
Bioinform.
Gero Doose, Stephan H. Bernhart, Rabea Wagener, Steve Hoffmann
2013 J jnl
2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
2013 — conf
The Trouble with Long-Range Base Pairs in RNA Folding.
BSB
Fabian Amman, Stephan H. Bernhart, Gero Doose, Ivo L. Hofacker, Jing Qin, Peter F. Stadler, Sebastian Will
2012 J jnl
Folding RNA/DNA hybrid duplexes.
Bioinform.
Ronny Lorenz, Ivo L. Hofacker, Stephan H. Bernhart
2012 — conf
RNA Folding Algorithms with G-Quadruplexes.
BSB
Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
2011 J jnl
A folding algorithm for extended RNA secondary structures.
Bioinform.
Christian Höner zu Siederdissen, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
2011 J jnl
RNA Accessibility in cubic time.
Algorithms Mol. Biol.
Stephan H. Bernhart, Ulrike Mückstein, Ivo L. Hofacker
2011 J jnl
ViennaRNA Package 2.0.
Algorithms Mol. Biol.
Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
2010 — conf
RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures.
GCB
Andreas R. Gruber, Stephan H. Bernhart, You Zhou, Ivo L. Hofacker
2008 J jnl
RNAalifold: improved consensus structure prediction for RNA alignments.
BMC Bioinform.
Stephan H. Bernhart, Ivo L. Hofacker, Sebastian Will, Andreas R. Gruber, Peter F. Stadler
2008 J jnl
Strategies for measuring evolutionary conservation of RNA secondary structures.
BMC Bioinform.
Andreas R. Gruber, Stephan H. Bernhart, Ivo L. Hofacker, Stefan Washietl
2008 J jnl
The Vienna RNA Websuite.
Nucleic Acids Res.
Andreas R. Gruber, Ronny Lorenz, Stephan H. Bernhart, Richard Neuböck, Ivo L. Hofacker
2008 — conf
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics.
BIRD
Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker
2006 J jnl
Local RNA base pairing probabilities in large sequences.
Bioinform.
Stephan H. Bernhart, Ivo L. Hofacker, Peter F. Stadler
2006 J jnl
Partition function and base pairing probabilities of RNA heterodimers.
Algorithms Mol. Biol.
Stephan H. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
2006 J jnl
Thermodynamics of RNA-RNA binding.
Bioinform.
Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
2005 — conf
Thermodynamics of RNA-RNA Binding.
German Conference on Bioinformatics
Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
2004 J jnl
Alignment of RNA base pairing probability matrices.
Bioinform.
Ivo L. Hofacker, Stephan H. Bernhart, Peter F. Stadler