Steffen Heyne

15 papers B 2Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2019 J jnl
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis.
Bioinform.
Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon Patrick Ryan, Thomas Manke
2018 J jnl
Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
Nucleic Acids Res.
Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen
2016 J jnl
deepTools2: a next generation web server for deep-sequencing data analysis.
Nucleic Acids Res.
Fidel Ramírez, Devon Patrick Ryan, Björn A. Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, Thomas Manke
2014 J jnl
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.
BMC Bioinform.
Christina Otto, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Rolf Backofen, Sebastian Will
2014 J jnl
Local Exact Pattern Matching for Non-FixedRNA Structures.
IEEE ACM Trans. Comput. Biol. Bioinform.
Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Otto, Sebastian Will
2014 — conf
Scalable structural clustering of local RNA secondary structures.
CMSR@ECCB
Fabrizio Costa, Steffen Heyne, Dominic Rose, Rolf Backofen
2014 — —
Using local RNA secondary structures for computational comparison and clustering of RNA molecules
Steffen Heyne
2013 J jnl
LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search.
Algorithms Mol. Biol.
Sebastian Will, Michael F. Siebauer, Steffen Heyne, Jan Engelhardt, Peter F. Stadler, Kristin Reiche, Rolf Backofen
2012 B conf
Exact Pattern Matching for RNA Structure Ensembles.
RECOMB
Christina Schmiedl, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Sebastian Will, Rolf Backofen
2012 J jnl
GraphClust: alignment-free structural clustering of local RNA secondary structures.
Bioinform.
Steffen Heyne, Fabrizio Costa, Dominic Rose, Rolf Backofen
2012 B conf
Local Exact Pattern Matching for Non-fixed RNA Structures.
CPM
Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Schmiedl, Sebastian Will
2012 J jnl
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.
Bioinform.
Nuno D. Mendes, Steffen Heyne, Ana T. Freitas, Marie-France Sagot, Rolf Backofen
2010 J jnl
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA.
Nucleic Acids Res.
Cameron Smith, Steffen Heyne, Andreas S. Richter, Sebastian Will, Rolf Backofen
2009 J jnl
Lightweight comparison of RNAs based on exact sequence-structure matches.
Bioinform.
Steffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen
2008 — conf
Lightweight Comparison of RNAs based on Exact Sequence-structure Matches.
German Conference on Bioinformatics
Steffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen