Steffen Heber

35 papers A 2B 2C 4Journal 7Unranked 20
YearRankTypeTitle / Venue / Authors
2022 — conf
A New Discrete Whale Optimization Algorithm with a Spiral 3-opt Local Search for Solving the Traveling Salesperson Problem.
ISMSI
Elias Rotondo, Steffen Heber
2020 J jnl
PeakPass: Automating ChIP-Seq Blacklist Creation.
J. Comput. Biol.
Charles E. Wimberley, Steffen Heber
2019 — conf
PeakPass: Automating ChIP-Seq Blacklist Creation.
ISBRA
Charles E. Wimberley, Steffen Heber
2019 — conf
RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data.
ICCABS
Patrick Perkins, Anna N. Stepanova, José M. Alonso, Steffen Heber
2019 — conf
Using a Novel Negative Selection Inspired Anomaly Detection Algorithm to Identify Corrupted Ribo-seq and RNA-seq Samples.
BCB
Patrick Perkins, Steffen Heber
2018 — conf
A parallel island model for biogeography-based classification rule mining in julia.
GECCO (Companion)
Samuel Ebert, Effat Farhana, Steffen Heber
2018 — conf
Identification of Ribosome Pause Sites Using a Z-Score Based Peak Detection Algorithm.
ICCABS
Patrick Perkins, Steffen Heber
2018 — conf
Identifying the Signatures of Missing Transcripts.
ICCABS
Bhupinder Sehra, Effat Farhana, Steffen Heber
2017 A conf
Biogeography-based rule mining for classification.
GECCO
Effat Farhana, Steffen Heber
2017 — conf
riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data.
ICCABS
Patrick Perkins, Steffen Heber
2015 — conf
A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana.
ISBRA
Qiwen Hu, Catharina Merchante, Anna N. Stepanova, José M. Alonso, Steffen Heber
2015 — conf
Mining transcript features related to translation in Arabidopsis using LASSO and random forest.
ICCABS
Qiwen Hu, Catharina Merchante, Anna N. Stepanova, José M. Alonso, Steffen Heber
2013 — conf
Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants.
ICCABS
Karen Merchante, Qiwen Hu, Anna N. Stepanova, José M. Alonso, Steffen Heber
2011 J jnl
Common Intervals of Multiple Permutations.
Algorithmica
Steffen Heber, Richard Mayr, Jens Stoye
2011 — conf
Improved RNA-Seq Partitions in Linear Models for Isoform Quantification.
BIBM
Brian E. Howard, Paola Veronese, Steffen Heber
2011 — conf
Workshop: Using a transcript catalog and paired-end RNA-Seq data to identify differential alternative splicing.
ICCABS
Brian E. Howard, Xiaoping Tan, Paola Veronese, Steffen Heber
2010 J jnl
Towards reliable isoform quantification using RNA-SEQ data.
BMC Bioinform.
Brian E. Howard, Steffen Heber
2009 — conf
Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates.
ISBRA
Sihui Zhao, Jihye Kim, Steffen Heber
2009 — conf
Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing.
ISBRA
Jihye Kim, Sihui Zhao, Brian E. Howard, Steffen Heber
2009 — conf
Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression.
ISBRA
Brian E. Howard, Beate Sick, Steffen Heber
2009 — conf
Towards Reliable Isoform Quantification Using RNA-Seq Data.
BIBM
Brian E. Howard, Steffen Heber
2009 J jnl
Unsupervised assessment of microarray data quality using a Gaussian mixture model.
BMC Bioinform.
Brian E. Howard, Beate Sick, Steffen Heber
2007 J jnl
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly.
IEEE ACM Trans. Comput. Biol. Bioinform.
Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang
2007 — conf
Finding association rules of
ACM Southeast Regional Conference
Jihye Kim, Sihui Zhao, Steffen Heber
2007 C conf
Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing.
BIBE
Sihui Zhao, Jihye Kim, Steffen Heber
2007 C conf
Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier.
BIBE
Brian E. Howard, Beate Sick, Imara Perera, Yang Ju Im, Heike Winter-Sederoff, Steffen Heber
2007 — conf
Statistical Approaches to Identifying Androgen Response Elements.
ICDM Workshops
Li Li, Steffen Heber, Qiang Zhang, Melvin E. Andersen
2006 — conf
Automatic quality assessment of Affymetrix GeneChip data.
ACM Southeast Regional Conference
Steffen Heber, Beate Sick
2005 J jnl
Common intervals of trees.
Inf. Process. Lett.
Steffen Heber, Carla D. Savage
2002 C conf
Common intervals and sorting by reversals: a marriage of necessity.
ECCB
Anne Bergeron, Steffen Heber, Jens Stoye
2002 A conf
Splicing graphs and EST assembly problem.
ISMB
Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner
2001 C conf
Algorithms for Finding Gene Clusters.
WABI
Steffen Heber, Jens Stoye
2001 B conf
Finding All Common Intervals of k Permutations.
CPM
Steffen Heber, Jens Stoye
2000 J jnl
Contig Selection in Physical Mapping.
J. Comput. Biol.
Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron
2000 B conf
Contig selection in physical mapping.
RECOMB
Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron