Stefano Toppo

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2023 J jnl
FunTaxIS-lite: a simple and light solution to investigate protein functions in all living organisms.
Bioinform.
Federico Bianca, Emilio Ispano, Ermanno Gazzola, Enrico Lavezzo, Paolo Fontana, Stefano Toppo
2020 J jnl
QPARSE: searching for long-looped or multimeric G-quadruplexes potentially distinctive and druggable.
Bioinform.
Michele Berselli, Enrico Lavezzo, Stefano Toppo
2018 J jnl
G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide.
PLoS Comput. Biol.
Enrico Lavezzo, Michele Berselli, Ilaria Frasson, Rosalba Perrone, Giorgio Palù, Alessandra R. Brazzale, Sara N. Richter, Stefano Toppo
2018 J jnl
NeSSie: a tool for the identification of approximate DNA sequence symmetries.
Bioinform.
Michele Berselli, Enrico Lavezzo, Stefano Toppo
2018 J jnl
Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene.
BMC Bioinform.
Francesco Sambo, Francesca Finotello, Enrico Lavezzo, Giacomo Baruzzo, Giulia Masi, Elektra Peta, Marco Falda, Stefano Toppo, Luisa Barzon, Barbara Di Camillo
2017 J jnl
Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms.
Bioinform.
Luca Bianco, Samantha Riccadonna, Enrico Lavezzo, Marco Falda, Elide Formentin, Duccio Cavalieri, Stefano Toppo, Paolo Fontana
2014 J jnl
Reducing bias in RNA sequencing data: a novel approach to compute counts.
BMC Bioinform.
Francesca Finotello, Enrico Lavezzo, Luca Bianco, Luisa Barzon, Paolo Mazzon, Paolo Fontana, Stefano Toppo, Barbara Di Camillo
2014 J jnl
keeSeek: searching distant non-existing words in genomes for PCR-based applications.
Bioinform.
Marco Falda, Paolo Fontana, Luisa Barzon, Stefano Toppo, Enrico Lavezzo
2013 J jnl
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Big Data
Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl
2012 J jnl
Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.
BMC Bioinform.
Marco Falda, Stefano Toppo, Alessandro Pescarolo, Enrico Lavezzo, Barbara Di Camillo, Andrea Facchinetti, Elisa Cilia, Riccardo Velasco, Paolo Fontana
2012 J jnl
Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.
Briefings Bioinform.
Francesca Finotello, Enrico Lavezzo, Paolo Fontana, Denis Peruzzo, Alessandro Albiero, Luisa Barzon, Marco Falda, Barbara Di Camillo, Stefano Toppo
2006 J jnl
Improving the quality of protein structure models by selecting from alignment alternatives.
BMC Bioinform.
Ingolf Sommer, Stefano Toppo, Oliver Sander, Thomas Lengauer, Silvio C. E. Tosatto
2005 J jnl
The SSEA server for protein secondary structure alignment.
Bioinform.
Paolo Fontana, Eckart Bindewald, Stefano Toppo, Riccardo Velasco, Giorgio Valle, Silvio C. E. Tosatto
2003 J jnl
TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts.
Bioinform.
Stefano Toppo, Nicola Cannata, Paolo Fontana, Chiara Romualdi, Paolo Laveder, Emanuela Bertocco, Gerolamo Lanfranchi, Giorgio Valle
2002 J jnl
Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs.
BMC Bioinform.
Rehannah H. A. Borup, Stefano Toppo, Yi-Wen Chen, Tanya M. Teslovich, Gerolamo Lanfranchi, Giorgio Valle, Eric P. Hoffman
2002 J jnl
Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices.
Bioinform.
Nicola Cannata, Stefano Toppo, Chiara Romualdi, Giorgio Valle