Stefan Wuchty

25 papers A 1B 1C 2Misc 1Journal 17Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Graph neural network integrated with pretrained protein language model for predicting human-virus protein-protein interactions.
Briefings Bioinform.
Linyang Jiang, Xiaodi Yang, Xiaokun Guo, Dianke Li, Jiajun Li, Stefan Wuchty, Wenyu Shi, Ziding Zhang
2024 C conf
Improving Audience Ratings Prediction of Japanese TV Dramas Using Knowledge-Based Embeddings.
ICMLA
Jerry Bonnell, Stefan Wuchty, Mitsunori Ogihara
2024 J jnl
Multi-modal features-based human-herpesvirus protein-protein interaction prediction by using LightGBM.
Briefings Bioinform.
Xiaodi Yang, Stefan Wuchty, Zeyin Liang, Li Ji, Bingjie Wang, Jialin Zhu, Ziding Zhang, Yujun Dong
2023 J jnl
Interdisciplinary Papers Supported by Disciplinary Grants Garner Deep and Broad Scientific Impact.
CoRR
Minsu Park, Suman Kalyan Maity, Stefan Wuchty, Dashun Wang
2023 J jnl
SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network.
Briefings Bioinform.
Yan Huang, Stefan Wuchty, Yuan Zhou, Ziding Zhang
2021 J jnl
HVIDB: a comprehensive database for human-virus protein-protein interactions.
Briefings Bioinform.
Xiaodi Yang, Xianyi Lian, Chen Fu, Stefan Wuchty, Shiping Yang, Ziding Zhang
2021 — conf
Multi-scale Convolutional Neural Networks for the Prediction of Human-virus Protein Interactions.
ICAART (2)
Xiaodi Yang, Ziding Zhang, Stefan Wuchty
2021 J jnl
Transfer learning via multi-scale convolutional neural layers for human-virus protein-protein interaction prediction.
Bioinform.
Xiaodi Yang, Shiping Yang, Xianyi Lian, Stefan Wuchty, Ziding Zhang
2020 C conf
Gene Subset Selection for Transfer Learning using Bilevel Particle Swarm Optimization.
ICMLA
Hassen Dhrif, Verónica Bolón-Canedo, Stefan Wuchty
2020 — conf
Stable Feature Selection for Gene Expression using Enhanced Binary Particle Swarm Optimization.
ICAART (2)
Hassen Dhrif, Stefan Wuchty
2019 J jnl
A Stable Combinatorial Particle Swarm Optimization for Scalable Feature Selection in Gene Expression Data.
CoRR
Hassen Dhrif, Luis G. Sánchez Giraldo, Miroslav Kubat, Stefan Wuchty
2019 A conf
A stable hybrid method for feature subset selection using particle swarm optimization with local search.
GECCO
Hassen Dhrif, Luis G. Sánchez Giraldo, Miroslav Kubat, Stefan Wuchty
2017 J jnl
Bacterial protein meta-interactomes predict cross-species interactions and protein function.
BMC Bioinform.
J. Harry Caufield, Christopher Wimble, Shary Semarjit, Stefan Wuchty, Peter Uetz
2015 — conf
Analysis of the Evolution of Research Groups and Topics in the ISMIR Conference.
ISMIR
Mohamed Sordo, Mitsunori Ogihara, Stefan Wuchty
2015 J jnl
Essentiality and centrality in protein interaction networks revisited.
BMC Bioinform.
Sawsan Khuri, Stefan Wuchty
2015 J jnl
The road to linking genomics and proteomics of pathogenic bacteria: from binary protein complexes to interaction pathways.
BMC Bioinform.
Sarah L. Keasey, Mohan Natesan, Christine Pugh, Teddy Kamata, Stefan Wuchty, Robert G. Ulrich
2013 J jnl
Important miRs of Pathways in Different Tumor Types.
PLoS Comput. Biol.
Stefan Wuchty, Dolores Arjona, Peter O. Bauer
2013 Misc conf
Module Cover - A New Approach to Genotype-Phenotype Studies.
Pacific Symposium on Biocomputing
Yoo-Ah Kim, Raheleh Salari, Stefan Wuchty, Teresa M. Przytycka
2011 J jnl
Identifying Causal Genes and Dysregulated Pathways in Complex Diseases.
PLoS Comput. Biol.
Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
2010 J jnl
FastMEDUSA: a parallelized tool to infer gene regulatory networks.
Bioinform.
Serdar Bozdag, Aiguo Li, Stefan Wuchty, Howard A. Fine
2010 J jnl
Gene pathways and subnetworks distinguish between major glioma subtypes and elucidate potential underlying biology.
J. Biomed. Informatics
Stefan Wuchty, Alice Zhang, Jennifer Walling, Susie Ahn, Aiguo Li, Martha Quezado, Carl Oberholtzer, Jean-Claude Zenklusen, Howard A. Fine
2010 B conf
Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases.
RECOMB
Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
2009 J jnl
Graph theoretical approach to study eQTL: a case study of
Bioinform.
Yang Huang, Stefan Wuchty, Michael T. Ferdig, Teresa M. Przytycka
2007 J jnl
Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach.
IEEE ACM Trans. Comput. Biol. Bioinform.
Chengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre
2004 J jnl
combAlign: A protein sequence comparison algorithm considering recombinations.
Silico Biol.
Katja Wegner, Stephan Jansen, Stefan Wuchty, Ralph Gauges, Ursula Kummer