Stefan Müller

18 papers B 1Journal 14Unranked 3
YearRankTypeTitle / Venue / Authors
2024 — conf
A SageMath Package for Elementary and Sign Vectors with Applications to Chemical Reaction Networks.
ICMS
Marcus S. Aichmayr, Stefan Müller, Georg Regensburger
2024 J jnl
A SageMath Package for Elementary and Sign Vectors with Applications to Chemical Reaction Networks.
CoRR
Marcus S. Aichmayr, Stefan Müller, Georg Regensburger
2024 J jnl
Sufficient Conditions for Linear Stability of Complex-Balanced Equilibria in Generalized Mass-Action Systems.
SIAM J. Appl. Dyn. Syst.
Stefan Müller, Georg Regensburger
2023 J jnl
A New Decomposition of the Graph Laplacian and the Binomial Structure of Mass-Action Systems.
J. Nonlinear Sci.
Stefan Müller
2022 J jnl
Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth.
PLoS Comput. Biol.
Stefan Müller, Diana Széliová, Jürgen Zanghellini
2022 J jnl
What makes a reaction network "chemical"?
J. Cheminformatics
Stefan Müller, Christoph Flamm, Peter F. Stadler
2019 J jnl
Flux tope analysis: studying the coordination of reaction directions in metabolic networks.
Bioinform.
Matthias P. Gerstl, Stefan Müller, Georg Regensburger, Jürgen Zanghellini
2019 J jnl
On the Bijectivity of Families of Exponential/Generalized Polynomial Maps.
SIAM J. Appl. Algebra Geom.
Stefan Müller, Josef Hofbauer, Georg Regensburger
2017 J jnl
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.
PLoS Comput. Biol.
Steffen Klamt, Georg Regensburger, Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Schuster, Radhakrishnan Mahadevan, Jürgen Zanghellini, Stefan Müller
2016 J jnl
Practical Guidelines for Incorporating Knowledge-Based and Data-Driven Strategies into the Inference of Gene Regulatory Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yu-Ting Hsiao, Wei-Po Lee, Wei Yang, Stefan Müller, Christoph Flamm, Ivo L. Hofacker, Philipp Kügler
2016 J jnl
Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry.
Found. Comput. Math.
Stefan Müller, Elisenda Feliu, Georg Regensburger, Carsten Conradi, Anne Shiu, Alicia Dickenstein
2014 — conf
Biochemical Space: A Framework for Systemic Annotation of Biological Models.
CS2Bio
Matej Klement, T. Ded, David Safránek, Jan Cervený, Stefan Müller, Ralf Steuer
2014 J jnl
Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution.
Biosyst.
Willi Gottstein, Stefan Müller, Hanspeter Herzel, Ralf Steuer
2014 B conf
Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents (Invited Talk).
CASC
Stefan Müller, Georg Regensburger
2014 J jnl
Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents.
CoRR
Stefan Müller, Georg Regensburger
2013 — conf
A Comprehensive Web-based Platform For Domain-Specific Biological Models.
CS2Bio
Matej Klement, David Safránek, T. Ded, Ales Pejznoch, Ladislav Nedbal, Ralf Steuer, Jan Cervený, Stefan Müller
2012 J jnl
Generalized Mass Action Systems: Complex Balancing Equilibria and Sign Vectors of the Stoichiometric and Kinetic-Order Subspaces.
SIAM J. Appl. Math.
Stefan Müller, Georg Regensburger
2006 J jnl
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
Bioinform.
Rainer Machné, Andrew Finney, Stefan Müller, James Lu, Stefanie Widder, Christoph Flamm