Stefan Kurtz

47 papers A 3B 2C 2Journal 34Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
ActivityFinder: Toward the Fully Automatic Integration of Structural and Binding Affinity Data.
J. Chem. Inf. Model.
Emanuel S. R. Ehmki, Torben Gutermuth, Tobias Harren, Stefan Kurtz, Matthias Rarey
2025 J jnl
Transcription factor prediction using protein 3D secondary structures.
Bioinform.
Jeanine Liebold, Fabian Neuhaus, Janina Geiser, Stefan Kurtz, Jan Baumbach, Khalique Newaz
2021 J jnl
DeepGRP: engineering a software tool for predicting genomic repetitive elements using Recurrent Neural Networks with attention.
Algorithms Mol. Biol.
Fabian Hausmann, Stefan Kurtz
2019 J jnl
GfaViz: flexible and interactive visualization of GFA sequence graphs.
Bioinform.
Giorgio Gonnella, Niklas Niehus, Stefan Kurtz
2017 J jnl
GfaPy: a flexible and extensible software library for handling sequence graphs in Python.
Bioinform.
Giorgio Gonnella, Stefan Kurtz
2014 J jnl
FISH Oracle 2: a web server for integrative visualization of genomic data in cancer research.
J. Clin. Bioinform.
Malte Mader, Ronald Simon, Stefan Kurtz
2013 J jnl
Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns.
BMC Bioinform.
Fernando Meyer, Stefan Kurtz, Michael Beckstette
2013 J jnl
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform.
Gordon Gremme, Sascha Steinbiss, Stefan Kurtz
2012 J jnl
A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sascha Steinbiss, Stefan Kurtz
2012 J jnl
Readjoiner: a fast and memory efficient string graph-based sequence assembler.
BMC Bioinform.
Giorgio Gonnella, Stefan Kurtz
2011 J jnl
CASSys: an integrated software-system for the interactive analysis of ChIP-seq data.
J. Integr. Bioinform.
Malik Alawi, Stefan Kurtz, Michael Beckstette
2011 J jnl
FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context.
J. Clin. Bioinform.
Malte Mader, Ronald Simon, Sascha Steinbiss, Stefan Kurtz
2011 J jnl
Structator: fast index-based search for RNA sequence-structure patterns.
BMC Bioinform.
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebastian Will, Michael Beckstette
2009 J jnl
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures.
PLoS Comput. Biol.
Steve Hoffmann, Christian Otto, Stefan Kurtz, Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller
2009 J jnl
Significant speedup of database searches with HMMs by search space reduction with PSSM family models.
Bioinform.
Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz
2008 J jnl
CoCoNUT: an efficient system for the comparison and analysis of genomes.
BMC Bioinform.
Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch
2008 J jnl
Efficient computation of absent words in genomic sequences.
BMC Bioinform.
Julia Herold, Stefan Kurtz, Robert Giegerich
2008 J jnl
Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences.
J. Comput. Biol.
Enno Ohlebusch, Stefan Kurtz
2007 J jnl
Optimising oligonucleotide array design for ChIP-on-chip.
BMC Bioinform.
Fiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg
2007 — conf
Optimized design and assessment of whole genome tiling arrays.
ISMB/ECCB (Supplement of Bioinformatics)
Stefan Gräf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek
2006 J jnl
Fast index based algorithms and software for matching position specific scoring matrices.
BMC Bioinform.
Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz
2005 J jnl
Engineering a software tool for gene structure prediction in higher organisms.
Inf. Softw. Technol.
Gordon Gremme, Volker Brendel, Michael E. Sparks, Stefan Kurtz
2005 — ed.
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, Germany, October 5-7, 2005
German Conference on Bioinformatics
Andrew Ernest Torda, Stefan Kurtz, Matthias Rarey
2004 — ch.
Computational Biology.
Handbook of Data Structures and Applications
Stefan Kurtz, Stefano Lonardi
2004 J jnl
GenAlyzer: interactive visualization of sequence similarities between entire genomes.
Bioinform.
Jomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich
2004 J jnl
Replacing suffix trees with enhanced suffix arrays.
J. Discrete Algorithms
Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch
2004 J jnl
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
Nucleic Acids Res.
Jan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich
2003 J jnl
An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges.
Briefings Bioinform.
Patrick S. G. Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak
2003 J jnl
Efficient implementation of lazy suffix trees.
Softw. Pract. Exp.
Robert Giegerich, Stefan Kurtz, Jens Stoye
2003 — conf
Local Similarity in RNA Secondary Structures.
CSB
Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz
2003 J jnl
RNA-related tools on the Bielefeld Bioinformatics Server.
Nucleic Acids Res.
Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich
2002 A conf
Efficient multiple genome alignment.
ISMB
Michael Höhl, Stefan Kurtz, Enno Ohlebusch
2002 C conf
Optimal Exact Strring Matching Based on Suffix Arrays.
SPIRE
Mohamed Ibrahim Abouelhoda, Enno Ohlebusch, Stefan Kurtz
2002 J jnl
Rapid development of nucleic acid diagnostics.
Proc. IEEE
J. Patrick Fitch, Shea N. Gardner, Thomas A. Kuczmarski, Stefan Kurtz, Rich Myers, Linda L. Ott, Thomas R. Slezak, Elizabeth A. Vitalis, Adam T. Zemla, Paula M. McCready
2002 C conf
The Enhanced Suffix Array and Its Applications to Genome Analysis.
WABI
Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch
2001 J jnl
HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns.
Nucleic Acids Res.
Stefan Gräf, Dirk Strothmann, Stefan Kurtz, Gerhard Steger
2000 A conf
Computation and Visualization of Degenerate Repeats in Complete Genomes.
ISMB
Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich
2000 J jnl
Universal Data Compression Based on the Burrows-Wheeler Transformation: Theory and Practice.
IEEE Trans. Computers
Bernhard Balkenhol, Stefan Kurtz
1999 — conf
Efficient Implementation of Lazy Suffix Trees.
WAE
Robert Giegerich, Stefan Kurtz, Jens Stoye
1999 B conf
Modifications of the Burrows and Wheeler Data Compression Algorithm.
Data Compression Conference
Bernhard Balkenhol, Stefan Kurtz, Yuri M. Shtarkov
1999 J jnl
REPuter: fast computation of maximal repeats in complete genomes.
Bioinform.
Stefan Kurtz, Chris Schleiermacher
1999 J jnl
Reducing the space requirement of suffix trees.
Softw. Pract. Exp.
Stefan Kurtz
1997 B conf
Estimating the Probability of Approximate Matches.
CPM
Stefan Kurtz, Gene Myers
1997 J jnl
From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction.
Algorithmica
Robert Giegerich, Stefan Kurtz
1995 J jnl
A Comparison of Imperative and Purely Functional Suffix Tree Constructions.
Sci. Comput. Program.
Robert Giegerich, Stefan Kurtz
1995 — —
Fundamental algorithms for a declarative pattern matching system.
Stefan Kurtz
1994 A conf
Suffix Trees in the Functional Programming Paradigm.
ESOP
Robert Giegerich, Stefan Kurtz