Stefan Canzar

49 papers A 2B 5C 3Misc 1Journal 26Unranked 10
YearRankTypeTitle / Venue / Authors
2025 B conf
Optimal Marker Genes for c-Separated Cell Types.
RECOMB
Bartol Borozan, Luka Borozan, Domagoj Severdija, Domagoj Matijevic, Stefan Canzar
2024 J jnl
Anti Tai mapping for unordered labeled trees.
Inf. Process. Lett.
Mislav Blazevic, Stefan Canzar, Khaled Elbassioni, Domagoj Matijevic
2024 J jnl
Metric multidimensional scaling for large single-cell datasets using neural networks.
Algorithms Mol. Biol.
Stefan Canzar, Van Hoan Do, Slobodan Jelic, Sören Laue, Domagoj Matijevic, Tomislav Prusina
2023 J jnl
Counting pseudoalignments to novel splicing events.
Bioinform.
Luka Borozan, Francisca Rojas Ringeling, Shao-Yen Kao, Elena Nikonova, Pablo Monteagudo-Mesas, Domagoj Matijevic, Maria L. Spletter, Stefan Canzar
2023 — conf
Fortuna Detects Novel Splicing in Drosophila scRNASeq Data.
MIPRO
Bartol Borozan, Luka Borozan, Domagoj Severdija, Domagoj Matijevic, Stefan Canzar
2023 — conf
Identifying Cell Types in Single-Cell Multimodal Omics Data via Joint Embedding Learning.
KSE
Van Hoan Do, Stefan Canzar
2022 — conf
Predicting RNA splicing branchpoints.
MIPRO
Antonio Jovanovic, Israa Alqassem, Nathan Chappell, Stefan Canzar, Domagoj Matijevic
2021 J jnl
Anti Tai Mapping for Unordered Labeled Trees.
CoRR
Mislav Blazevic, Stefan Canzar, Khaled M. Elbassioni, Domagoj Matijevic
2021 J jnl
BiCoN: network-constrained biclustering of patients and omics data.
Bioinform.
Olga Lazareva, Stefan Canzar, Kevin Yuan, Jan Baumbach, David B. Blumenthal, Paolo Tieri, Tim Kacprowski, Markus List
2021 J jnl
McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data.
Bioinform.
Israa Alqassem, Yash Sonthalia, Erika Klitzke-Feser, Heejung Shim, Stefan Canzar
2020 J jnl
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data.
J. Comput. Biol.
Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz
2020 — book
Protein-Protein Interaction Networks, Methods and Protocols.
Protein-Protein Interaction Networks
Stefan Canzar, Francisca Rojas Ringeling
2019 B conf
Dynamic Pseudo-time Warping of Complex Single-Cell Trajectories.
RECOMB
Van Hoan Do, Mislav Blazevic, Pablo Monteagudo, Luka Borozan, Khaled M. Elbassioni, Sören Laue, Francisca Rojas Ringeling, Domagoj Matijevic, Stefan Canzar
2019 J jnl
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.
Briefings Bioinform.
Dinanath Sulakhe, Mark D'Souza, Sheng Wang, Sandhya Balasubramanian, Prashanth Athri, Bingqing Xie, Stefan Canzar, Gady Agam, T. Conrad Gilliam, Natalia Maltsev
2019 — conf
Properties of the generalized Robinson-Foulds metric.
MIPRO
Luka Borozan, Domagoj Matijevic, Stefan Canzar
2018 B conf
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data.
RECOMB
Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz
2018 J jnl
On the approximability of the maximum interval constrained coloring problem.
Discret. Optim.
Stefan Canzar, Khaled M. Elbassioni, Amr Elmasry, Rajiv Raman
2017 J jnl
BASIC: BCR assembly from single cells.
Bioinform.
Stefan Canzar, Karlynn E. Neu, Qingming Tang, Patrick C. Wilson, Aly A. Khan
2017 J jnl
Short Read Mapping: An Algorithmic Tour.
Proc. IEEE
Stefan Canzar, Steven L. Salzberg
2016 J jnl
ModuleAlign: module-based global alignment of protein-protein interaction networks.
Bioinform.
Somaye Hashemifar, Jianzhu Ma, Hammad Naveed, Stefan Canzar, Jinbo Xu
2016 J jnl
Resolving Conflicting Predictions from Multimapping Reads.
J. Comput. Biol.
Stefan Canzar, Khaled M. Elbassioni, Mitchell Jones, Julián Mestre
2015 B conf
CIDANE: Comprehensive Isoform Discovery and Abundance Estimation.
RECOMB
Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau
2015 J jnl
On Tree-Constrained Matchings and Generalizations.
Algorithmica
Stefan Canzar, Khaled M. Elbassioni, Gunnar W. Klau, Julián Mestre
2013 J jnl
A polynomial-delay algorithm for enumerating approximate solutions to the interval constrained coloring problem.
ACM J. Exp. Algorithmics
Stefan Canzar, Khaled M. Elbassioni, Julián Mestre
2013 J jnl
Charge Group Partitioning in Biomolecular Simulation.
J. Comput. Biol.
Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau
2013 J jnl
GAGE-B: an evaluation of genome assemblers for bacterial organisms.
Bioinform.
Tanja Magoc, Stephan Pabinger, Stefan Canzar, Xinyue Liu, Qi Su, Daniela Puiu, Luke J. Tallon, Steven L. Salzberg
2013 J jnl
The Duplication-Loss Small Phylogeny Problem: From Cherries to Trees.
J. Comput. Biol.
Sandro Andreotti, Knut Reinert, Stefan Canzar
2013 C conf
The Generalized Robinson-Foulds Metric.
WABI
Sebastian Böcker, Stefan Canzar, Gunnar W. Klau
2013 J jnl
The generalized Robinson-Foulds metric.
CoRR
Sebastian Böcker, Stefan Canzar, Gunnar W. Klau
2012 J jnl
A Branch-and-Cut Algorithm for the 2-Species Duplication-Loss Phylogeny Problem
CoRR
Stefan Canzar, Sandro Andreotti
2012 J jnl
CLEVER: clique-enumerating variant finder.
Bioinform.
Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth
2012 B conf
Charge Group Partitioning in Biomolecular Simulation.
RECOMB
Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alpeshkumar K. Malde, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau
2012 A conf
Solving the Minimum String Cover Problem.
ALENEX
Stefan Canzar, Tobias Marschall, Sven Rahmann, Chris Schwiegelshohn
2011 C conf
A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding.
WABI
Stefan Canzar, Mohammed El-Kebir
2011 J jnl
An Exact Algorithm for Side-Chain Placement in Protein Design
CoRR
Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau
2011 J jnl
An exact algorithm for side-chain placement in protein design.
Optim. Lett.
Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau
2011 J jnl
Approximation Algorithms for the Interval Constrained Coloring Problem.
Algorithmica
Ernst Althaus, Stefan Canzar, Khaled M. Elbassioni, Andreas Karrenbauer, Julián Mestre
2011 — conf
On Tree-Constrained Matchings and Generalizations.
ICALP (1)
Stefan Canzar, Khaled M. Elbassioni, Gunnar W. Klau, Julián Mestre
2010 A conf
A Polynomial Delay Algorithm for Enumerating Approximate Solutions to the Interval Constrained Coloring Problem.
ALENEX
Stefan Canzar, Khaled M. Elbassioni, Julián Mestre
2010 J jnl
Computing H/D-Exchange rates of single residues from data of proteolytic fragments.
BMC Bioinform.
Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Jeremiah D. Tipton, Huimin Zhang
2010 — conf
On the Approximability of the Maximum Interval Constrained Coloring Problem.
ISAAC (2)
Stefan Canzar, Khaled M. Elbassioni, Amr Elmasry, Rajiv Raman
2009 — conf
Discrete Fitting of Hydrogen-Deuterium-Exchange-data of Overlapping Fragments.
BIOCOMP
Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Jeremiah Tiptopn, Huimin Zhang
2008 J jnl
A Lagrangian relaxation approach for the multiple sequence alignment problem.
J. Comb. Optim.
Ernst Althaus, Stefan Canzar
2008 — conf
Approximating the Interval Constrained Coloring Problem.
SWAT
Ernst Althaus, Stefan Canzar, Khaled M. Elbassioni, Andreas Karrenbauer, Julián Mestre
2008 Misc conf
Computing H/D-exchange speeds of single residues from data of peptic fragments.
SAC
Ernst Althaus, Stefan Canzar, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Huimin Zhang
2008 — conf
LASA: A Tool for Non-heuristic Alignment of Multiple Sequences.
BIRD
Ernst Althaus, Stefan Canzar
2008 — —
Lagrangian Relaxation - Solving NP-hard Problems in Computational Biology via Combinatorial Optimization.
Stefan Canzar
2007 C conf
A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem.
COCOA
Ernst Althaus, Stefan Canzar
2006 — conf
Shape Distributions and Protein Similarity.
German Conference on Bioinformatics
Stefan Canzar, Jan Remy