Stefan Bekiranov

13 papers A* 1Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2025 — conf
IdeaBench: Benchmarking Large Language Models for Research Idea Generation.
KDD (2)
Sikun Guo, Amir Hassan Shariatmadari, Guangzhi Xiong, Albert Huang, Myles Kim, Corey M. Williams, Stefan Bekiranov, Aidong Zhang
2025 J jnl
Toward Reliable Biomedical Hypothesis Generation: Evaluating Truthfulness and Hallucination in Large Language Models.
CoRR
Guangzhi Xiong, Eric Xie, Corey M. Williams, Myles Kim, Amir Hassan Shariatmadari, Sikun Guo, Stefan Bekiranov, Aidong Zhang
2025 A* conf
Toward Reliable Scientific Hypothesis Generation: Evaluating Truthfulness and Hallucination in Large Language Models.
IJCAI
Guangzhi Xiong, Eric Xie, Corey M. Williams, Myles Kim, Amir Hassan Shariatmadari, Sikun Guo, Stefan Bekiranov, Aidong Zhang
2024 J jnl
DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data.
Bioinform.
Guangzhi Xiong, Nathan Leroy, Stefan Bekiranov, Nathan C. Sheffield, Aidong Zhang
2024 J jnl
IdeaBench: Benchmarking Large Language Models for Research Idea Generation.
CoRR
Sikun Guo, Amir Hassan Shariatmadari, Guangzhi Xiong, Albert Huang, Eric Xie, Stefan Bekiranov, Aidong Zhang
2024 J jnl
Improving Scientific Hypothesis Generation with Knowledge Grounded Large Language Models.
CoRR
Guangzhi Xiong, Eric Xie, Amir Hassan Shariatmadari, Sikun Guo, Stefan Bekiranov, Aidong Zhang
2023 J jnl
Interpretable meta-learning of multi-omics data for survival analysis and pathway enrichment.
Bioinform.
Hyun Jae Cho, Mia Shu, Stefan Bekiranov, Chongzhi Zang, Aidong Zhang
2023 J jnl
ProtoCell4P: an explainable prototype-based neural network for patient classification using single-cell RNA-seq.
Bioinform.
Guangzhi Xiong, Stefan Bekiranov, Aidong Zhang
2020 — conf
Analysis of Meta-Learning Approaches for TCGA Pan-cancer Datasets.
BIBM
Jingyuan Chou, Stefan Bekiranov, Chongzhi Zang, Mengdi Huai, Aidong Zhang
2020 J jnl
Implementation of a Hamming distance-like genomic quantum classifier using inner products on ibmqx2 and ibmq_16_melbourne.
Quantum Mach. Intell.
Kunal Kathuria, Aakrosh Ratan, Michael McConnell, Stefan Bekiranov
2015 J jnl
Genome-wide predictors of NF-κB recruitment and transcriptional activity.
BioData Min.
Marcin Cieslik, Stefan Bekiranov
2010 J jnl
Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression.
BMC Bioinform.
Xiaojiang Xu, Stephen Hoang, Marty W. Mayo, Stefan Bekiranov
2009 J jnl
Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication.
Bioinform.
Youngchul Kim, Stefan Bekiranov, Jae K. Lee, Taesung Park