Stavros J. Hamodrakas

35 papers Journal 33Unranked 2
YearRankTypeTitle / Venue / Authors
2021 J jnl
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins.
Frontiers Bioinform.
Ahmed F. Roumia, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Ioannis A. Tamposis, Stavros J. Hamodrakas, Pantelis G. Bagos
2021 J jnl
The human GPCR signal transduction network.
Netw. Model. Anal. Health Informatics Bioinform.
Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Margarita C. Theodoropoulou, Georgia Braliou, Georgios N. Tsaousis, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos
2019 J jnl
Structural characterization and molecular dynamics simulations of the caprine and bovine solute carrier family 11 A1 (SLC11A1).
J. Comput. Aided Mol. Des.
Kostas A. Triantaphyllopoulos, Fotis A. Baltoumas, Stavros J. Hamodrakas
2019 J jnl
The gram-negative outer membrane modeler: Automated building of lipopolysaccharide-rich bacterial outer membranes in four force fields.
J. Comput. Chem.
Fotis A. Baltoumas, Stavros J. Hamodrakas, Vassiliki A. Iconomidou
2016 J jnl
A β-solenoid model of the Pmel17 repeat domain: insights to the formation of functional amyloid fibrils.
J. Comput. Aided Mol. Des.
Nikolaos N. Louros, Fotis A. Baltoumas, Stavros J. Hamodrakas, Vassiliki A. Iconomidou
2016 J jnl
Molecular dynamics simulations and structure-based network analysis reveal structural and functional aspects of G-protein coupled receptor dimer interactions.
J. Comput. Aided Mol. Des.
Fotis A. Baltoumas, Margarita C. Theodoropoulou, Stavros J. Hamodrakas
2013 J jnl
mpMoRFsDB: a database of molecular recognition features in membrane proteins.
Bioinform.
Foivos Gypas, Georgios N. Tsaousis, Stavros J. Hamodrakas
2012 — conf
CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria.
SETN
Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
2011 J jnl
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria.
Nucleic Acids Res.
Konstantinos D. Tsirigos, Pantelis G. Bagos, Stavros J. Hamodrakas
2010 J jnl
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins.
Bioinform.
Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
2010 J jnl
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques.
Database J. Biol. Databases Curation
Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas
2009 J jnl
How Many 3D Structures Do We Need to Train a Predictor?
Genom. Proteom. Bioinform.
Pantelis G. Bagos, Georgios N. Tsaousis, Stavros J. Hamodrakas
2008 J jnl
Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes.
J. Bioinform. Comput. Biol.
Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas
2008 J jnl
gpDB: a database of GPCRs, G-proteins, effectors and their interactions.
Bioinform.
Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
2006 J jnl
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins.
BMC Bioinform.
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavros J. Hamodrakas
2006 J jnl
PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization.
Genom. Proteom. Bioinform.
Evangelia Petsalaki, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas
2005 J jnl
A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models.
BMC Bioinform.
Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiotis K. Papasaikas, Stavros J. Hamodrakas
2005 J jnl
Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
BMC Bioinform.
Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas
2005 J jnl
N-terminal sequence-based prediction of subcellular location.
BMC Bioinform.
Evangelia Petsalakis, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas
2005 J jnl
Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks.
Bioinform.
Nikolaos G. Sgourakis, Pantelis G. Bagos, Stavros J. Hamodrakas
2004 J jnl
A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.
BMC Bioinform.
Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
2004 J jnl
A database for G proteins and their interaction with GPCRs.
BMC Bioinform.
Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
2004 — conf
Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation.
ICGI
Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas
2004 J jnl
PRED-GPCR: GPCR recognition and family classification server.
Nucleic Acids Res.
Panagiotis K. Papasaikas, Pantelis G. Bagos, Zoi I. Litou, Vasilis J. Promponas, Stavros J. Hamodrakas
2004 J jnl
PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins.
Nucleic Acids Res.
Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
2004 J jnl
TMRPres2D: high quality visual representation of transmembrane protein models.
Bioinform.
Ioannis C. Spyropoulos, Theodore Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
2004 J jnl
cuticleDB: a relational database of Arthropod cuticular proteins.
BMC Bioinform.
Christiana K. Magkrioti, Ioannis C. Spyropoulos, Vassiliki A. Iconomidou, Judith H. Willis, Stavros J. Hamodrakas
2004 J jnl
waveTM: Wavelet-based transmembrane segment prediction.
Silico Biol.
Evanthia E. Pashou, Zoi I. Litou, Theodore Liakopoulos, Stavros J. Hamodrakas
2003 J jnl
Evaluation of annotation strategies using an entire genome sequence.
Bioinform.
Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis
2003 J jnl
GeneViTo: Visualizing gene-product functional and structural features in genomic datasets.
BMC Bioinform.
Georgios S. Vernikos, Christos G. Gkogkas, Vasilis J. Promponas, Stavros J. Hamodrakas
2000 J jnl
CAST: an iterative algorithm for the complexity analysis of sequence tracts.
Bioinform.
Vasilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis
1998 J jnl
A web server to locate periodicities in a sequence.
Bioinform.
C. M. Pasquier, Vasilis J. Promponas, N. J. Varvayannis, Stavros J. Hamodrakas
1998 J jnl
CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods.
Silico Biol.
Vasilis J. Promponas, G. A. Palaios, C. M. Pasquier, J. S. Hamodrakas, Stavros J. Hamodrakas
1995 J jnl
PBM: a software package to create, display and manipulate interactively models of small molecules and proteins on IBM-compatible PCs.
Comput. Appl. Biosci.
Anastassis Perrakis, C. Constantinides, A. Athanasiades, Stavros J. Hamodrakas
1988 J jnl
A protein secondary structure prediction scheme for the IBM PC and compatibles.
Comput. Appl. Biosci.
Stavros J. Hamodrakas