Stanislaw Dunin-Horkawicz

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2023 J jnl
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models.
Bioinform.
Kamil Kaminski, Jan Ludwiczak, Kamil Pawlicki, Vikram Alva, Stanislaw Dunin-Horkawicz
2022 J jnl
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins.
Briefings Bioinform.
Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz
2021 J jnl
A library of coiled-coil domains: from regular bundles to peculiar twists.
Bioinform.
Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto, Jan Ludwiczak, Stanislaw Dunin-Horkawicz
2021 J jnl
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor.
PLoS Comput. Biol.
Vasilina Zayats, Agata P. Perlinska, Aleksandra I. Jarmolinska, Borys Jastrzebski, Stanislaw Dunin-Horkawicz, Joanna I. Sulkowska
2020 J jnl
Self-analysis of repeat proteins reveals evolutionarily conserved patterns.
BMC Bioinform.
Matthew Merski, Krzysztof Mlynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanislaw Dunin-Horkawicz, Maria W. Górna
2019 J jnl
DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences.
Bioinform.
Jan Ludwiczak, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva, Stanislaw Dunin-Horkawicz
2019 J jnl
RRMdb - an evolutionary-oriented database of RNA recognition motif sequences.
Database J. Biol. Databases Curation
Martyna Nowacka, Pietro Boccaletto, Elzbieta Jankowska, Tomasz Jarzynka, Janusz M. Bujnicki, Stanislaw Dunin-Horkawicz
2018 J jnl
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information.
Nucleic Acids Res.
Pietro Boccaletto, Marcin Magnus, Catarina Almeida, Adriana Zyla, Astha Astha, Radoslaw Pluta, Blazej Baginski, Elzbieta Jankowska, Stanislaw Dunin-Horkawicz, Tomasz K. Wirecki, Michal J. Boniecki, Filip Stefaniak, Janusz M. Bujnicki
2015 J jnl
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes.
BMC Bioinform.
Magdalena A. Machnicka, Katarzyna H. Kaminska, Stanislaw Dunin-Horkawicz, Janusz M. Bujnicki
2013 J jnl
MODOMICS: a database of RNA modification pathways - 2013 update.
Nucleic Acids Res.
Magdalena A. Machnicka, Kaja Milanowska, Okan Osman Oglou, Elzbieta Purta, Malgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanislaw Dunin-Horkawicz, Kristian Rother, Mark Helm, Janusz M. Bujnicki, Henri Grosjean
2009 J jnl
MODOMICS: a database of RNA modification pathways, update 2008
Nucleic Acids Res.
Anna Czerwoniec, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Katarzyna H. Kaminska, Joanna M. Kasprzak, Janusz M. Bujnicki, Henri Grosjean, Kristian Rother
2007 J jnl
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.
BMC Bioinform.
Karolina L. Tkaczuk, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Janusz M. Bujnicki
2006 J jnl
MODOMICS: a database of RNA modification pathways.
Nucleic Acids Res.
Stanislaw Dunin-Horkawicz, Anna Czerwoniec, Michal J. Gajda, Marcin Feder, Henri Grosjean, Janusz M. Bujnicki