Stanislav Mazurenko

18 papers A* 2Misc 1Journal 15
YearRankTypeTitle / Venue / Authors
2025 J jnl
Anticipating protein evolution with successor sequence predictor.
J. Cheminformatics
Rayyan T. Khan, Pavel Kohout, Milos Musil, Monika Rosinska, Jirí Damborský, Stanislav Mazurenko, David Bednar
2025 J jnl
Generalization Beyond Benchmarks: Evaluating Learnable Protein-Ligand Scoring Functions on Unseen Targets.
CoRR
Jakub Kopko, David Graber, Saltuk Mustafa Eyrilmez, Stanislav Mazurenko, David Bednar, Jirí Sedlár, Josef Sivic
2025 A* conf
Learning to engineer protein flexibility.
ICLR
Petr Kouba, Joan Planas-Iglesias, Jirí Damborský, Jirí Sedlár, Stanislav Mazurenko, Josef Sivic
2025 J jnl
Response to Letter to Editor by A. Derbalah et al.: the role of automation in enhancing reproducibility and interoperability of PBPK models.
Briefings Bioinform.
Elena Domínguez Romero, Stanislav Mazurenko, Martin Scheringer, Vítor A. P. Martins dos Santos, Chris T. A. Evelo, Mihail Anton, John M. Hancock, Anze Zupanic, María Suárez-Diez
2024 J jnl
A computational workflow for analysis of missense mutations in precision oncology.
J. Cheminformatics
Rayyan T. Khan, Petra Pokorna, Jan Stourac, Simeon Borko, Ihor Arefiev, Joan Planas-Iglesias, Adam Dobias, Gaspar R. P. Pinto, Veronika Szotkowska, Jaroslav Sterba, Ondrej Slaby, Jirí Damborský, Stanislav Mazurenko, David Bednar
2024 J jnl
BenchStab: a tool for automated querying of web-based stability predictors.
Bioinform.
Jan Velecký, Matej Berezný, Milos Musil, Jirí Damborský, David Bednar, Stanislav Mazurenko
2024 J jnl
Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes.
J. Cheminformatics
Ondrej Vavra, Jonathan D. Tyzack, Farzan Haddadi, Jan Stourac, Jirí Damborský, Stanislav Mazurenko, Janet M. Thornton, David Bednar
2024 A* conf
Learning to design protein-protein interactions with enhanced generalization.
ICLR
Anton Bushuiev, Roman Bushuiev, Petr Kouba, Anatolii Filkin, Marketa Gabrielova, Michal Gabriel, Jirí Sedlár, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic
2024 J jnl
Making PBPK models more reproducible in practice.
Briefings Bioinform.
Elena Domínguez Romero, Stanislav Mazurenko, Martin Scheringer, Vítor A. P. Martins dos Santos, Chris T. A. Evelo, Mihail Anton, John M. Hancock, Anze Zupanic, María Suárez-Diez
2024 J jnl
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning.
Briefings Bioinform.
Jan Stourac, Simeon Borko, Rayyan T. Khan, Petra Pokorna, Adam Dobias, Joan Planas-Iglesias, Stanislav Mazurenko, Gaspar R. P. Pinto, Veronika Szotkowska, Jaroslav Sterba, Ondrej Slaby, Jirí Damborský, David Bednar
2024 J jnl
Revealing data leakage in protein interaction benchmarks.
CoRR
Anton Bushuiev, Roman Bushuiev, Jirí Sedlár, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic
2023 J jnl
Learning to design protein-protein interactions with enhanced generalization.
CoRR
Anton Bushuiev, Roman Bushuiev, Anatolii Filkin, Petr Kouba, Marketa Gabrielova, Michal Gabriel, Jirí Sedlár, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic
2022 J jnl
CalFitter 2.0: Leveraging the power of singular value decomposition to analyse protein thermostability.
Nucleic Acids Res.
Antonin Kunka, David Lacko, Jan Stourac, Jirí Damborský, Zbynek Prokop, Stanislav Mazurenko
2021 J jnl
FireProtDB: database of manually curated protein stability data.
Nucleic Acids Res.
Jan Stourac, Juraj Dubrava, Milos Musil, Jana Horackova, Jirí Damborský, Stanislav Mazurenko, David Bednar
2019 J jnl
Acceleration and Global Convergence of a First-Order Primal-Dual Method for Nonconvex Problems.
SIAM J. Optim.
Christian Clason, Stanislav Mazurenko, Tuomo Valkonen
2019 J jnl
Primal-dual block-proximal splitting for a class of non-convex problems.
CoRR
Stanislav Mazurenko, Jyrki Jauhiainen, Tuomo Valkonen
2018 J jnl
CalFitter: a web server for analysis of protein thermal denaturation data.
Nucleic Acids Res.
Stanislav Mazurenko, Jan Stourac, Antonin Kunka, Sava Nedeljkovic, David Bednar, Zbynek Prokop, Jirí Damborský
2017 Misc conf
Multi-Enzyme Pathway Optimisation Through Star-Shaped Reachable Sets.
PACBB
Stanislav Mazurenko, Jirí Damborský, Zbynek Prokop