Stanislav Geidl

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2016 J jnl
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges.
J. Cheminformatics
Tomás Racek, Jana Pazúriková, Radka Svobodová Vareková, Stanislav Geidl, Ales Krenek, Francesco L. Falginella, Vladimír Horský, Václav Hejret, Jaroslav Koca
2015 J jnl
AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules.
J. Cheminformatics
Crina-Maria Ionescu, David Sehnal, Francesco L. Falginella, Purbaj Pant, Lukás Pravda, Tomás Bouchal, Radka Svobodová Vareková, Stanislav Geidl, Jaroslav Koca
2015 J jnl
High-quality and universal empirical atomic charges for chemoinformatics applications.
J. Cheminformatics
Stanislav Geidl, Tomás Bouchal, Tomás Racek, Radka Svobodová Vareková, Václav Hejret, Ales Krenek, Ruben Abagyan, Jaroslav Koca
2015 J jnl
How Does the Methodology of 3D Structure Preparation Influence the Quality of p
J. Chem. Inf. Model.
Stanislav Geidl, Radka Svobodová Vareková, Veronika Bendová, Lukás Petrusek, Crina-Maria Ionescu, Zdenek Jurka, Ruben Abagyan, Jaroslav Koca
2015 J jnl
ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank.
Nucleic Acids Res.
David Sehnal, Radka Svobodová Vareková, Lukás Pravda, Crina-Maria Ionescu, Stanislav Geidl, Vladimír Horský, Deepti Jaiswal Kundu, Michaela Wimmerová, Jaroslav Koca
2014 J jnl
Empirical charges for chemoinformatics applications.
J. Cheminformatics
Tomás Bouchal, Radka Svobodová Vareková, Tomás Racek, Crina-Maria Ionescu, Stanislav Geidl, Ales Krenek, Jaroslav Koca
2014 J jnl
MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes.
Nucleic Acids Res.
Radka Svobodová Vareková, Deepti Jaiswal Kundu, David Sehnal, Crina-Maria Ionescu, Stanislav Geidl, Lukás Pravda, Vladimír Horský, Michaela Wimmerová, Jaroslav Koca
2014 J jnl
QM quality atomic charges for proteins.
J. Cheminformatics
Stanislav Geidl, Crina-Maria Ionescu, Radka Svobodová Vareková, Jaroslav Koca
2013 J jnl
Predicting pKa values from EEM atomic charges.
J. Cheminformatics
Radka Svobodová Vareková, Stanislav Geidl, Crina-Maria Ionescu, Ondrej Skrehota, Tomás Bouchal, David Sehnal, Ruben Abagyan, Jaroslav Koca
2013 J jnl
Rapid Calculation of Accurate Atomic Charges for Proteins via the Electronegativity Equalization Method.
J. Chem. Inf. Model.
Crina-Maria Ionescu, Stanislav Geidl, Radka Svobodová Vareková, Jaroslav Koca
2012 J jnl
How the methodology of 3D structure preparation influences the quality of QSPR models?
J. Cheminformatics
Stanislav Geidl, Roman Beránek, Radka Svobodová Vareková, Tomás Bouchal, Miroslav Brumovský, Michal Kudera, Ondrej Skrehota, Jaroslav Koca
2012 J jnl
QSPR designer - employ your own descriptors in the automated QSAR modeling process.
J. Cheminformatics
Ondrej Skrehota, Radka Svobodová Vareková, Stanislav Geidl, Michal Kudera, David Sehnal, Crina-Maria Ionescu, Jan Zidek, Jaroslav Koca
2012 J jnl
SiteBinder - an improved approach for comparing multiple protein structural motifs. Case studies on biologically important motifs.
J. Cheminformatics
David Sehnal, Radka Svobodová Vareková, Heinrich J. Huber, Stanislav Geidl, Crina-Maria Ionescu, Michaela Wimmerová, Jaroslav Koca
2012 J jnl
SiteBinder: An Improved Approach for Comparing Multiple Protein Structural Motifs.
J. Chem. Inf. Model.
David Sehnal, Radka Svobodová Vareková, Heinrich J. Huber, Stanislav Geidl, Crina-Maria Ionescu, Michaela Wimmerová, Jaroslav Koca
2011 J jnl
Predicting p
J. Chem. Inf. Model.
Radka Svobodová Vareková, Stanislav Geidl, Crina-Maria Ionescu, Ondrej Skrehota, Michal Kudera, David Sehnal, Tomás Bouchal, Ruben Abagyan, Heinrich J. Huber, Jaroslav Koca
2011 J jnl
QSPR designer - a program to design and evaluate QSPR models. Case study on pK
J. Cheminformatics
Ondrej Skrehota, Radka Svobodová Vareková, Stanislav Geidl, Michal Kudera, David Sehnal, Crina-Maria Ionescu, Jaroslav Koca