Stamatios N. Sotiropoulos

56 papers C 2Misc 1Journal 45Unranked 8

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Scalable Simulation-Based Model Inference with Test-Time Complexity Control. CoRR Manuel Glöckler, J. P. Manzano-Patrón, Stamatios N. Sotiropoulos, Cornelius Schröder, Jakob H. Macke
2025	—	`conf`	MO-CTranS: A Unified Multi-Organ Segmentation Model Learning from Multiple Heterogeneously Labelled Datasets. ISBI Zhendi Gong, Susan T. Francis, Eleanor Cox, Stamatios N. Sotiropoulos, Dorothee P. Auer, Guoping Qiu, Andrew P. French, Xin Chen
2025	J	`jnl`	MO-CTranS: A unified multi-organ segmentation model learning from multiple heterogeneously labelled datasets. CoRR Zhendi Gong, Susan T. Francis, Eleanor Cox, Stamatios N. Sotiropoulos, Dorothee P. Auer, Guoping Qiu, Andrew P. French, Xin Chen
2025	J	`jnl`	Uncertainty mapping and probabilistic tractography using Simulation-based Inference in diffusion MRI: A comparison with classical Bayes. Medical Image Anal. J. P. Manzano-Patrón, Michael Deistler, Cornelius Schröder, Theodore Kypraios, Pedro J. Gonçalves, Jakob H. Macke, Stamatios N. Sotiropoulos
2023	J	`jnl`	Automated detection of cerebral microbleeds on MR images using knowledge distillation framework. Frontiers Neuroinformatics Vaanathi Sundaresan, Christoph Arthofer, Giovanna Zamboni, Andrew G. Murchison, Robert A. Dineen, Peter M. Rothwell, Dorothee P. Auer, Chaoyue Wang, Karla L. Miller, Benjamin C. Tendler, Fidel Alfaro-Almagro, Stamatios N. Sotiropoulos, Nikola Sprigg, Ludovica Griffanti, Mark Jenkinson
2023	J	`jnl`	Non-reversibility outperforms functional connectivity in characterisation of brain states in MEG data. NeuroImage Prejaas Tewarie, Rikkert Hindriks, Yi Ming Lai, Stamatios N. Sotiropoulos, Morten L. Kringelbach, Gustavo Deco
2023	J	`jnl`	QuNex - An integrative platform for reproducible neuroimaging analytics. Frontiers Neuroinformatics Jie Lisa Ji, Jure Demsar, Clara Fonteneau, Zailyn Tamayo, Lining Pan, Aleksij Kraljic, Andraz Matkovic, Nina Purg, Markus Helmer, Shaun Warrington, Anderson M. Winkler, Valerio Zerbi, Timothy S. Coalson, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, John D. Murray, Alan Anticevic, Grega Repovs
2021	J	`jnl`	Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning. Frontiers Neuroinformatics Vaanathi Sundaresan, Christoph Arthofer, Giovanna Zamboni, Robert A. Dineen, Peter M. Rothwell, Stamatios N. Sotiropoulos, Dorothee P. Auer, Daniel J. Tozer, Hugh S. Markus, Karla L. Miller, Iulius Dragonu, Nikola Sprigg, Fidel Alfaro-Almagro, Mark Jenkinson, Ludovica Griffanti
2021	J	`jnl`	Modelling white matter in gyral blades as a continuous vector field. NeuroImage Michiel Cottaar, Matteo Bastiani, Nikhil Boddu, Matthew F. Glasser, Suzanne N. Haber, David C. Van Essen, Stamatios N. Sotiropoulos, Saâd Jbabdi
2021	J	`jnl`	The Human Connectome Project: A retrospective. NeuroImage Jennifer Stine Elam, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, Jesper L. R. Andersson, Gregory C. Burgess, Sandra W. Curtiss, Robert Oostenveld, Linda J. Larson-Prior, Jan-Mathijs Schoffelen, Michael R. Hodge, Eileen A. Cler, Daniel M. Marcus, Deanna M. Barch, Essa Yacoub, Stephen M. Smith, Kâmil Ugurbil, David C. Van Essen
2021	J	`jnl`	Uncertainty modelling in deep learning for safer neuroimage enhancement: Demonstration in diffusion MRI. NeuroImage Ryutaro Tanno, Daniel E. Worrall, Enrico Kaden, Aurobrata Ghosh, Francesco Grussu, Alberto Bizzi, Stamatios N. Sotiropoulos, Antonio Criminisi, Daniel C. Alexander
2020	J	`jnl`	Improved fibre dispersion estimation using b-tensor encoding. NeuroImage Michiel Cottaar, Filip Szczepankiewicz, Matteo Bastiani, Moisés Hernández-Fernández, Stamatios N. Sotiropoulos, Markus Nilsson, Saâd Jbabdi
2020	J	`jnl`	Non-negative data-driven mapping of structural connections with application to the neonatal brain. NeuroImage Elinor Thompson, Ali Reza Mohammadi-Nejad, Emma C. Robinson, Jesper L. R. Andersson, Saâd Jbabdi, Matthew F. Glasser, Matteo Bastiani, Stamatios N. Sotiropoulos
2020	J	`jnl`	Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing. NeuroImage Joonas A. A. Autio, Matthew F. Glasser, Takayuki Ose, Chad J. Donahue, Matteo Bastiani, Masahiro Ohno, Yoshihiko Kawabata, Yuta Urushibata, Katsutoshi Murata, Kantaro Nishigori, Masataka Yamaguchi, Yuki Hori, Atsushi Yoshida, Yasuhiro Go, Timothy S. Coalson, Saâd Jbabdi, Stamatios N. Sotiropoulos, Henry Kennedy, Takuya Hayashi
2020	J	`jnl`	XTRACT - Standardised protocols for automated tractography in the human and macaque brain. NeuroImage Shaun Warrington, Katherine L. Bryant, Alexandre A. Khrapitchev, Jérôme Sallet, Marina Charquero-Ballester, Gwenaëlle Douaud, Saâd Jbabdi, Rogier B. Mars, Stamatios N. Sotiropoulos
2019	J	`jnl`	Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project. NeuroImage Matteo Bastiani, Jesper L. R. Andersson, Lucilio Cordero-Grande, Maria Murgasova, Jana Hutter, Anthony N. Price, Antonios Makropoulos, Sean P. Fitzgibbon, Emer J. Hughes, Daniel Rueckert, Suresh Victor, Mary A. Rutherford, A. David Edwards, Stephen M. Smith, Jacques-Donald Tournier, Joseph V. Hajnal, Saâd Jbabdi, Stamatios N. Sotiropoulos
2019	J	`jnl`	Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction. NeuroImage Matteo Bastiani, Michiel Cottaar, Sean P. Fitzgibbon, Sana Suri, Fidel Alfaro-Almagro, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson
2019	J	`jnl`	How do spatially distinct frequency specific MEG networks emerge from one underlying structural connectome? The role of the structural eigenmodes. NeuroImage Prejaas Tewarie, Romesh G. Abeysuriya, Áine Byrne, George C. O'Neill, Stamatios N. Sotiropoulos, Matthew J. Brookes, Stephen Coombes
2019	J	`jnl`	Uncertainty Quantification in Deep Learning for Safer Neuroimage Enhancement. CoRR Ryutaro Tanno, Daniel E. Worrall, Enrico Kaden, Aurobrata Ghosh, Francesco Grussu, Alberto Bizzi, Stamatios N. Sotiropoulos, Antonio Criminisi, Daniel C. Alexander
2019	J	`jnl`	Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes. NeuroImage Moisés Hernández-Fernández, István Zoltan Reguly, Saâd Jbabdi, Michael B. Giles, Stephen M. Smith, Stamatios N. Sotiropoulos
2018	J	`jnl`	A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks. PLoS Comput. Biol. Romesh G. Abeysuriya, Jonathan Hadida, Stamatios N. Sotiropoulos, Saâd Jbabdi, Robert Becker, Benjamin A. E. Hunt, Matthew J. Brookes, Mark W. Woolrich
2018	J	`jnl`	A gyral coordinate system predictive of fibre orientations. NeuroImage Michiel Cottaar, Matteo Bastiani, Charles Chen, Krikor Dikranian, David C. Van Essen, Timothy Edward John Behrens, Stamatios N. Sotiropoulos, Saâd Jbabdi
2018	J	`jnl`	Bayesian Optimisation of Large-Scale Biophysical Networks. NeuroImage Jonathan Hadida, Stamatios N. Sotiropoulos, Romesh G. Abeysuriya, Mark W. Woolrich, Saâd Jbabdi
2018	J	`jnl`	Estimation of white matter fiber parameters from compressed multiresolution diffusion MRI using sparse Bayesian learning. NeuroImage Pramod Kumar Pisharady, Stamatios N. Sotiropoulos, Julio Martin Duarte-Carvajalino, Guillermo Sapiro, Christophe Lenglet
2018	J	`jnl`	Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. NeuroImage Fidel Alfaro-Almagro, Mark Jenkinson, Neal K. Bangerter, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N. Sotiropoulos, Saâd Jbabdi, Moisés Hernández-Fernández, Emmanuel Vallée, Diego Vidaurre, Matthew A. Webster, Paul McCarthy, Christopher Rorden, Alessandro Daducci, Daniel C. Alexander, Hui Zhang, Iulius Dragonu, Paul M. Matthews, Karla L. Miller, Stephen M. Smith
2017	—	`conf`	A Sparse Bayesian Learning Algorithm for White Matter Parameter Estimation from Compressed Multi-shell Diffusion MRI. MICCAI (1) Pramod Kumar Pisharady, Stamatios N. Sotiropoulos, Guillermo Sapiro, Christophe Lenglet
2017	—	`conf`	Bayesian Image Quality Transfer with CNNs: Exploring Uncertainty in dMRI Super-Resolution. MICCAI (1) Ryutaro Tanno, Daniel E. Worrall, Aurobrata Ghosh, Enrico Kaden, Stamatios N. Sotiropoulos, Antonio Criminisi, Daniel C. Alexander
2017	J	`jnl`	Bayesian Image Quality Transfer with CNNs: Exploring Uncertainty in dMRI Super-Resolution. CoRR Ryutaro Tanno, Daniel E. Worrall, Aurobrata Ghosh, Enrico Kaden, Stamatios N. Sotiropoulos, Antonio Criminisi, Daniel C. Alexander
2017	J	`jnl`	Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging. NeuroImage Jeroen Mollink, Michiel Kleinnijenhuis, Anne-Marie van Cappellen van Walsum, Stamatios N. Sotiropoulos, Michiel Cottaar, Christopher Mirfin, Mattias P. Heinrich, Mark Jenkinson, Menuka Pallebage-Gamarallage, Olaf Ansorge, Saâd Jbabdi, Karla L. Miller
2017	J	`jnl`	Image quality transfer and applications in diffusion MRI. NeuroImage Daniel C. Alexander, Darko Zikic, Aurobrata Ghosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dyrby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi
2017	J	`jnl`	Improved tractography using asymmetric fibre orientation distributions. NeuroImage Matteo Bastiani, Michiel Cottaar, Krikor Dikranian, Aurobrata Ghosh, Hui Zhang, Daniel C. Alexander, Tim E. J. Behrens, Saâd Jbabdi, Stamatios N. Sotiropoulos
2017	J	`jnl`	Subthalamic deep brain stimulation sweet spots and hyperdirect cortical connectivity in Parkinson's disease. NeuroImage Harith Akram, Stamatios N. Sotiropoulos, Saâd Jbabdi, Dejan Georgiev, Philipp Mahlknecht, Jonathan Hyam, Thomas Foltynie, Patricia Limousin, Enrico De Vita, Marjan Jahanshahi, Marwan I. Hariz, John Ashburner, Tim E. J. Behrens, Ludvic U. Zrinzo
2016	J	`jnl`	A probabilistic atlas of the cerebellar white matter. NeuroImage K. M. van Baarsen, Michiel Kleinnijenhuis, Saâd Jbabdi, Stamatios N. Sotiropoulos, J. A. Grotenhuis, Anne-Marie van Cappellen van Walsum
2016	J	`jnl`	An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. NeuroImage Jesper L. R. Andersson, Stamatios N. Sotiropoulos
2016	J	`jnl`	Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project. NeuroImage Stamatios N. Sotiropoulos, Moisés Hernández-Fernández, An T. Vu, Jesper L. R. Andersson, Steen Moeller, Essa Yacoub, Christophe Lenglet, Kâmil Ugurbil, Timothy Edward John Behrens, Saâd Jbabdi
2016	J	`jnl`	Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images. NeuroImage Jesper L. R. Andersson, Mark S. Graham, Eniko Zsoldos, Stamatios N. Sotiropoulos
2015	J	`jnl`	Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data. NeuroImage Peter V. Kochunov, Neda Jahanshad, Daniel S. Marcus, Anderson M. Winkler, Emma Sprooten, Thomas E. Nichols, Susan N. Wright, L. Elliot Hong, Binish Patel, Timothy Behrens, Saâd Jbabdi, Jesper L. R. Andersson, Christophe Lenglet, Essa Yacoub, Steen Moeller, Eddie Auerbach, Kâmil Ugurbil, Stamatios N. Sotiropoulos, Rachel M. Brouwer, Bennett A. Landman, Hervé Lemaître, Anouk den Braber, Marcel P. Zwiers, Stuart J. Ritchie, Kimm van Hulzen, Laura Almasy, Joanne E. Curran, Greig I. de Zubicaray, Ravi Duggirala, Peter T. Fox
2015	J	`jnl`	High resolution whole brain diffusion imaging at 7 T for the Human Connectome Project. NeuroImage An T. Vu, Edward J. Auerbach, Christophe Lenglet, Steen Moeller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Essa Yacoub, Kâmil Ugurbil
2015	J	`jnl`	Non-parametric representation and prediction of single- and multi-shell diffusion-weighted MRI data using Gaussian processes. NeuroImage Jesper L. R. Andersson, Stamatios N. Sotiropoulos
2015	—	`conf`	Sparse Bayesian Inference of White Matter Fiber Orientations from Compressed Multi-resolution Diffusion MRI. MICCAI (1) Pramod Kumar Pisharady, Julio Martin Duarte-Carvajalino, Stamatios N. Sotiropoulos, Guillermo Sapiro, Christophe Lenglet
2013	J	`jnl`	Advances in diffusion MRI acquisition and processing in the Human Connectome Project. NeuroImage Stamatios N. Sotiropoulos, Saâd Jbabdi, Junqian Xu, Jesper L. R. Andersson, Steen Moeller, Edward J. Auerbach, Matthew F. Glasser, Moisés Hernández, Guillermo Sapiro, Mark Jenkinson, David A. Feinberg, Essa Yacoub, Christophe Lenglet, David C. Van Essen, Kâmil Ugurbil, Timothy Edward John Behrens
2013	J	`jnl`	Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. NeuroImage Kâmil Ugurbil, Junqian Xu, Edward J. Auerbach, Steen Moeller, An T. Vu, Julio Martin Duarte-Carvajalino, Christophe Lenglet, Xiaoping Wu, Sebastian Schmitter, Pierre-François van de Moortele, John P. Strupp, Guillermo Sapiro, Federico De Martino, Dingxin Wang, Noam Harel, Michael Garwood, Liyong Chen, David A. Feinberg, Stephen M. Smith, Karla L. Miller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Timothy Edward John Behrens, Matthew F. Glasser, David C. Van Essen, Essa Yacoub
2013	J	`jnl`	RubiX: Combining Spatial Resolutions for Bayesian Inference of Crossing Fibers in Diffusion MRI. IEEE Trans. Medical Imaging Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Mark William Woolrich, Kâmil Ugurbil, Timothy Edward John Behrens
2013	J	`jnl`	The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson
2012	C	`conf`	Accelerating Fibre Orientation Estimation from Diffusion Weighted Magnetic Resonance Imaging Using GPUs. PDP Moisés Hernández, Ginés D. Guerrero, José M. Cecilia, José M. García, Alberto Inuggi, Stamatios N. Sotiropoulos
2012	J	`jnl`	Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI. NeuroImage Stamatios N. Sotiropoulos, Timothy Edward John Behrens, Saâd Jbabdi
2012	—	`conf`	Modelling fibre fanning in diffusion-weighted MRI. ISBI Stamatios N. Sotiropoulos, Timothy Edward John Behrens, Saâd Jbabdi
2010	J	`jnl`	Brain tractography using Q-ball imaging and graph theory: Improved connectivities through fibre crossings via a model-based approach. NeuroImage Stamatios N. Sotiropoulos, Li Bai, Paul Simon Morgan, Cris S. Constantinescu, Christopher R. Tench
2010	—	`conf`	Exact and analytic Bayesian inference for orientation distribution functions. ISBI Stamatios N. Sotiropoulos, David E. Jones, Li Bai, Theodore Kypraios
2010	J	`jnl`	Fuzzy anatomical connectedness of the brain using single and multiple fibre orientations estimated from diffusion MRI. Comput. Medical Imaging Graph. Stamatios N. Sotiropoulos, Li Bai, Christopher R. Tench
2009	—	`conf`	Robust Graph-Based Tracking Through Crossing Fibre Configurations. ISBI Stamatios N. Sotiropoulos, Christopher R. Tench, Paul S. Morgan, Li Bai
2008	C	`conf`	In-vivo brain anatomical connectivity using diffusion magnetic resonance imaging and fuzzy connectedness. BIBE Stamatios N. Sotiropoulos, Christopher R. Tench, Li Bai
2006	J	`jnl`	Low-Cost Real-Time 2-D Motion Detection Based on Reconfigurable Computing. IEEE Trans. Instrum. Meas. Kyprianos Papadimitriou, Apostolos Dollas, Stamatios N. Sotiropoulos
2005	J	`jnl`	A 2-D motion detection model for low-cost embedded reconfigurable I/O devices. IEEE Trans. Biomed. Eng. Apostolos Dollas, Stamatios N. Sotiropoulos, Kyprianos Papademetriou
2003	Misc	`conf`	A Second Generation Embedded Reconfigurable Input Device for Kinetically Challenged Persons. FCCM Kyprianos Papademetriou, Apostolos Dollas, Stamatios N. Sotiropoulos
2003	—	`conf`	Adaptation of a low cost motion recognition system for custom operation from shrink-wrapped hardware. WBMA@MM Stamatios N. Sotiropoulos, Kyprianos Papademetriou, Apostolos Dollas