Stacey D. Finley

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2024 J jnl
Flux sampling in genome-scale metabolic modeling of microbial communities.
BMC Bioinform.
Patrick E. Gelbach, Handan Cetin, Stacey D. Finley
2023 J jnl
Calibrating agent-based models to tumor images using representation learning.
PLoS Comput. Biol.
Colin G. Cess, Stacey D. Finley
2022 J jnl
Kinetic and data-driven modeling of pancreatic β-cell central carbon metabolism and insulin secretion.
PLoS Comput. Biol.
Patrick E. Gelbach, Dongqing Zheng, Scott E. Fraser, Kate L. White, Nicholas A. Graham, Stacey D. Finley
2022 J jnl
Siamese neural networks for a generalized, quantitative comparison of complex model outputs.
CoRR
Colin G. Cess, Stacey D. Finley
2021 J jnl
A field guide to cultivating computational biology.
CoRR
Anne E. Carpenter, Casey S. Greene, Piero Carnici, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley, Kim-Anh Lê Cao, Jerry S. H. Lee, Luigi Marchionni, Suzanne Sindi, Fabian J. Theis, Gregory P. Way, Jean Y. H. Yang, Elana J. Fertig
2020 J jnl
Multi-scale modeling of macrophage - T cell interactions within the tumor microenvironment.
PLoS Comput. Biol.
Colin G. Cess, Stacey D. Finley
2019 J jnl
Metabolic reprogramming dynamics in tumor spheroids: Insights from a multicellular, multiscale model.
PLoS Comput. Biol.
Mahua Roy, Stacey D. Finley
2018 J jnl
Mechanistic insight into activation of MAPK signaling by pro-angiogenic factors.
BMC Syst. Biol.
Min Song, Stacey D. Finley
2017 J jnl
Mechanistic modeling quantifies the influence of tumor growth kinetics on the response to anti-angiogenic treatment.
PLoS Comput. Biol.
Thomas D. Gaddy, Qianhui Wu, Alyssa D. Arnheim, Stacey D. Finley
2011 J jnl
Pharmacokinetics and pharmacodynamics of VEGF-neutralizing antibodies.
BMC Syst. Biol.
Stacey D. Finley, Marianne O. Engel-Stefanini, Princess I. Imoukhuede, Aleksander S. Popel
2010 J jnl
In silico feasibility of novel biodegradation pathways for 1, 2, 4-trichlorobenzene.
BMC Syst. Biol.
Stacey D. Finley, Linda J. Broadbelt, Vassily Hatzimanikatis