Sriram Sankararaman

50 papers A* 4A 1B 11C 1Misc 1Journal 30Unranked 1

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	ALIGN: Aligned Delegation with Performance Guarantees for Multi-Agent LLM Reasoning. CoRR Tong Zhu, Baiting Chen, Jin Zhou, Hua Zhou, Sriram Sankararaman, Xiaowu Dai
2026	J	`jnl`	Multi-Objective Alignment of Language Models for Personalized Psychotherapy. CoRR Mehrab Beikzadeh, Yasaman Asadollah Salmanpour, Ashima Suvarna, Sriram Sankararaman, Matteo Malgaroli, Majid Sarrafzadeh, Saadia Gabriel
2025	A*	`conf`	CACTI: Leveraging Copy Masking and Contextual Information to Improve Tabular Data Imputation. ICML Aditya Gorla, Ryan Wang, Zhengtong Liu, Ulzee An, Sriram Sankararaman
2025	J	`jnl`	CACTI: Leveraging Copy Masking and Contextual Information to Improve Tabular Data Imputation. CoRR Aditya Gorla, Ryan Wang, Zhengtong Liu, Ulzee An, Sriram Sankararaman
2025	—	`conf`	DK-BEHRT: Teaching Language Models International Classification of Disease (ICD) Codes using Known Disease Descriptions. AAAI Bridge Program Ulzee An, Simon A. Lee, Moonseong Jeong, Aditya Gorla, Jeffrey N. Chiang, Sriram Sankararaman
2025	J	`jnl`	Fair positive unlabeled learning for predicting undiagnosed Alzheimer's disease in diverse electronic health records. npj Digit. Medicine Thai Tran, Mingzhou Fu, Jessica Fung, Sriram Sankararaman, David A. Elashoff, Keith Vossel, Timothy S. Chang
2025	A*	`conf`	Raptor: Scalable Train-Free Embeddings for 3D Medical Volumes Leveraging Pretrained 2D Foundation Models. ICML Ulzee An, Moonseong Jeong, Simon A. Lee, Aditya Gorla, Yuzhe Yang, Sriram Sankararaman
2025	J	`jnl`	Raptor: Scalable Train-Free Embeddings for 3D Medical Volumes Leveraging Pretrained 2D Foundation Models. CoRR Ulzee An, Moonseong Jeong, Simon A. Lee, Aditya Gorla, Yuzhe Yang, Sriram Sankararaman
2025	B	`ed.`	Research in Computational Molecular Biology - 29th International Conference, RECOMB 2025, Seoul, South Korea, April 26-29, 2025, Proceedings RECOMB Sriram Sankararaman
2025	J	`jnl`	Scientific Applications Leveraging Randomized Linear Algebra. CoRR Vivak Patel, Daniel Adrian Maldonado, Maksim Melnichenko, Nathaniel Pritchard, Vishwas Rao, Elizaveta Rebrova, Sriram Sankararaman
2024	B	`conf`	A Scalable Adaptive Quadratic Kernel Method for Interpretable Epistasis Analysis in Complex Traits. RECOMB Boyang Fu, Prateek Anand, Aakarsh Anand, Joel Mefford, Sriram Sankararaman
2024	J	`jnl`	MANOCCA: a robust and computationally efficient test of covariance in high-dimension multivariate omics data. Briefings Bioinform. Christophe Boetto, Arthur Frouin, Léo Henches, Antoine Auvergne, Yuka Suzuki, Etienne Patin, Marius Bredon, Alec Chiu, Milieu Interieur Consortium, Sriram Sankararaman, Noah Zaitlen, Sean P. Kennedy, Lluis Quintana-Murci, Darragh Duffy, Harry Sokol, Hugues Aschard
2024	J	`jnl`	Personalized mood prediction from patterns of behavior collected with smartphones. npj Digit. Medicine Brunilda Balliu, Chris Douglas, Darsol Seok, Liat Shenhav, Yue Wu, Doxa Chatzopoulou, William Kaiser, Victor Chen, Jennifer Kim, Sandeep Deverasetty, Inna Arnaudova, Robert Gibbons, Eliza Congdon, Michelle G. Craske, Nelson B. Freimer, Eran Halperin, Sriram Sankararaman, Jonathan Flint
2024	B	`conf`	Scalable Summary Statistics-Based Heritability Estimation Method with Individual Genotype Level Accuracy. RECOMB Moonseong Jeong, Ali Pazokitoroudi, Zhengtong Liu, Sriram Sankararaman
2024	J	`jnl`	VISTA: an integrated framework for structural variant discovery. Briefings Bioinform. Varuni Sarwal, Seungmo Lee, Jianzhi Yang, Sriram Sankararaman, Mark Chaisson, Eleazar Eskin, Serghei Mangul
2023	J	`jnl`	dotears: Scalable, consistent DAG estimation using observational and interventional data. CoRR Albert Xue, Jingyou Rao, Sriram Sankararaman, Harold Pimentel
2022	B	`conf`	AutoComplete: Deep Learning-Based Phenotype Imputation for Large-Scale Biomedical Data. RECOMB Ulzee An, Na Cai, Andy Dahl, Sriram Sankararaman
2022	J	`jnl`	Evaluating supervised and unsupervised background noise correction in human gut microbiome data. PLoS Comput. Biol. Leah Briscoe, Brunilda Balliu, Sriram Sankararaman, Eran Halperin, Nandita R. Garud
2022	B	`conf`	Tractable and Expressive Generative Models of Genetic Variation Data. RECOMB Meihua Dang, Anji Liu, Xinzhu Wei, Sriram Sankararaman, Guy Van den Broeck
2021	J	`jnl`	A two-step approach to testing overall effect of gene-environment interaction for multiple phenotypes. Bioinform. Arunabha Majumdar, Kathryn S. Burch, Tanushree Haldar, Sriram Sankararaman, Bogdan Pasaniuc, W. James Gauderman, John S. Witte
2021	J	`jnl`	Advancing admixture graph estimation via maximum likelihood network orientation. Bioinform. Erin K. Molloy, Arun Durvasula, Sriram Sankararaman
2021	C	`conf`	An Efficient Linear Mixed Model Framework for Meta-Analytic Association Studies Across Multiple Contexts. WABI Brandon Jew, Jiajin Li, Sriram Sankararaman, Jae Hoon Sul
2021	J	`jnl`	Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging. npj Digit. Medicine Nadav Rakocz, Jeffrey N. Chiang, Muneeswar G. Nittala, Giulia Corradetti, Liran Tiosano, Swetha Velaga, Michael Thompson, Brian L. Hill, Sriram Sankararaman, Jonathan L. Haines, Margaret A. Pericak-Vance, Dwight Stambolian, SriniVas R. Sadda, Eran Halperin
2021	A	`conf`	CONTRA: Contrarian statistics for controlled variable selection. AISTATS Mukund Sudarshan, Aahlad Manas Puli, Lakshmi Subramanian, Sriram Sankararaman, Rajesh Ranganath
2021	J	`jnl`	Contrastive Mixup: Self- and Semi-Supervised learning for Tabular Domain. CoRR Sajad Darabi, Shayan Fazeli, Ali Pazoki, Sriram Sankararaman, Majid Sarrafzadeh
2021	J	`jnl`	Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits. PLoS Comput. Biol. Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman
2021	A*	`conf`	Marginal Contribution Feature Importance - an Axiomatic Approach for Explaining Data. ICML Amnon Catav, Boyang Fu, Yazeed Zoabi, Ahuva Weiss-Meilik, Noam Shomron, Jason Ernst, Sriram Sankararaman, Ran Gilad-Bachrach
2020	B	`conf`	A Scalable Method for Estimating the Regional Polygenicity of Complex Traits. RECOMB Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman
2020	J	`jnl`	A Unifying Framework for Imputing Summary Statistics in Genome-Wide Association Studies. J. Comput. Biol. Yue Wu, Eleazar Eskin, Sriram Sankararaman
2020	A*	`conf`	Explaining Groups of Points in Low-Dimensional Representations. ICML Gregory Plumb, Jonathan Terhorst, Sriram Sankararaman, Ameet Talwalkar
2020	J	`jnl`	Explaining Groups of Points in Low-Dimensional Representations. CoRR Gregory Plumb, Jonathan Terhorst, Sriram Sankararaman, Ameet Talwalkar
2020	J	`jnl`	Marginal Contribution Feature Importance - an Axiomatic Approach for The Natural Case. CoRR Amnon Catav, Boyang Fu, Jason Ernst, Sriram Sankararaman, Ran Gilad-Bachrach
2019	B	`conf`	Fast Estimation of Genetic Correlation for Biobank-Scale Data. RECOMB Yue Wu, Anna Yaschenko, Mohammadreza Hajy Heydary, Sriram Sankararaman
2019	B	`conf`	Scalable Multi-component Linear Mixed Models with Application to SNP Heritability Estimation. RECOMB Ali Pazokitoroudi, Yue Wu, Kathryn S. Burch, Kangcheng Hou, Bogdan Pasaniuc, Sriram Sankararaman
2018	B	`conf`	A Unifying Framework for Summary Statistic Imputation. RECOMB Yue Wu, Eleazar Eskin, Sriram Sankararaman
2018	J	`jnl`	A scalable estimator of SNP heritability for biobank-scale data. Bioinform. Yue Wu, Sriram Sankararaman
2018	J	`jnl`	A unifying framework for joint trait analysis under a non-infinitesimal model. Bioinform. Ruth Johnson, Huwenbo Shi, Bogdan Pasaniuc, Sriram Sankararaman
2018	B	`conf`	Tensor Composition Analysis Detects Cell-Type Specific Associations in Epigenetic Studies. RECOMB Elior Rahmani, Regev Schweiger, Saharon Rosset, Sriram Sankararaman, Eran Halperin
2015	J	`jnl`	Inferring parental genomic ancestries using pooled semi-Markov processes. Bioinform. James Y. Zou, Eran Halperin, Esteban Gonzàlez Burchard, Sriram Sankararaman
2013	J	`jnl`	Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinform. Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian E. Henderson, David Reich, Christopher A. Haiman, Esteban Gonzàlez Burchard, Eran Halperin
2012	J	`jnl`	Fast and accurate inference of local ancestry in Latino populations. Bioinform. Yael Baran, Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Esteban Gonzàlez Burchard, Eran Halperin
2012	Misc	`conf`	TrickleDNS: Bootstrapping DNS security using social trust. COMSNETS Sriram Sankararaman, Jay Chen, Lakshminarayanan Subramanian, Venugopalan Ramasubramanian
2010	J	`jnl`	Active site prediction using evolutionary and structural information. Bioinform. Sriram Sankararaman, Fei Sha, Jack F. Kirsch, Michael I. Jordan, Kimmen Sjölander
2010	—	`—`	Statistical models for analyzing human genetic variation. Sriram Sankararaman
2009	J	`jnl`	INTREPID: a web server for prediction of functionally important residues by evolutionary analysis. Nucleic Acids Res. Sriram Sankararaman, Bryan Kolaczkowski, Kimmen Sjölander
2009	J	`jnl`	Inference of locus-specific ancestry in closely related populations. Bioinform. Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin
2009	J	`jnl`	ResBoost: characterizing and predicting catalytic residues in enzymes. BMC Bioinform. Ron Alterovitz, Aaron Arvey, Sriram Sankararaman, Carolina Dallett, Yoav Freund, Kimmen Sjölander
2008	J	`jnl`	INTREPID - INformation-theoretic TREe traversal for Protein functional site IDentification. Bioinform. Sriram Sankararaman, Kimmen Sjölander
2008	B	`conf`	On the Inference of Ancestries in Admixed Populations. RECOMB Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan
2004	J	`jnl`	Enhancing a biomedical information extraction system with dictionary mining and context disambiguation. IBM J. Res. Dev. Sougata Mukherjea, L. Venkata Subramaniam, Gaurav Chanda, Sriram Sankararaman, Ravi Kothari, Vishal S. Batra, Deo N. Bhardwaj, Biplav Srivastava