Sriram P. Chockalingam

25 papers A 6B 1Misc 2Journal 9Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
SCEMENT: scalable and memory efficient integration of large-scale single-cell RNA-sequencing data.
Bioinform.
Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru
2023 J jnl
A Parallel Framework for Constraint-Based Bayesian Network Learning via Markov Blanket Discovery.
IEEE Trans. Parallel Distributed Syst.
Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru
2023 J jnl
MCPNet: a parallel maximum capacity-based genome-scale gene network construction framework.
Bioinform.
Tony C. Pan, Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru
2022 J jnl
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks.
Bioinform.
Maneesha Aluru, Harsh Shrivastava, Sriram P. Chockalingam, Shruti Shivakumar, Srinivas Aluru
2021 A conf
Parallel construction of module networks.
SC
Ankit Srivastava, Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru
2020 A conf
A parallel framework for constraint-based bayesian network learning via markov blanket discovery.
SC
Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru
2020 J jnl
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction.
BMC Bioinform.
Sriram P. Chockalingam, Jodh Pannu, Sahar Hooshmand, Sharma V. Thankachan, Srinivas Aluru
2020 J jnl
Sequential and parallel algorithms for all-pair k-mismatch maximal common substrings.
J. Parallel Distributed Comput.
Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru
2018 A conf
A Parallel Algorithm for Bayesian Network Inference Using Arithmetic Circuits.
IPDPS
Md. Vasimuddin, Sriram P. Chockalingam, Srinivas Aluru
2018 B conf
Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis.
RECOMB
Sharma V. Thankachan, Chaitanya Aluru, Sriram P. Chockalingam, Srinivas Aluru
2018 — conf
An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny Reconstruction.
BCB
Jodh Pannu, Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru
2017 J jnl
A greedy alignment-free distance estimator for phylogenetic inference.
BMC Bioinform.
Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru
2017 — conf
Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics Analyses.
BCB
Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru
2017 — conf
Probabilistic estimation of overlap graphs for large sequence datasets.
BIBM
Rahul Nihalani, Sriram P. Chockalingam, Shaowei Zhu, Vijay V. Vazirani, Srinivas Aluru
2017 — conf
Reverse Engineering Gene Networks: A Comparative Study at Genome-scale.
BCB
Sriram P. Chockalingam, Maneesha Aluru, Hongqing Guo, Yanhai Yin, Srinivas Aluru
2016 A conf
A parallel algorithm for finding all pairs
SC
Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru
2016 J jnl
ALFRED: A Practical Method for Alignment-Free Distance Computation.
J. Comput. Biol.
Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Alberto Apostolico, Srinivas Aluru
2016 — conf
An Efficient Algorithm for Finding All Pairs k-Mismatch Maximal Common Substrings.
ISBRA
Sharma V. Thankachan, Sriram P. Chockalingam, Srinivas Aluru
2015 — conf
A greedy alignment-free distance estimator for phylogenetic inference (extended abstract).
ICCABS
Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru
2015 — conf
Efficient detection of viral transmission with threshold-based methods.
ICCABS
Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue
2015 Misc conf
Information Theory Based Genome-Scale Gene Networks Construction Using MapReduce.
HiPC
Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru
2015 Misc conf
Parallel Read Error Correction for Big Genomic Datasets.
HiPC
Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru
2014 A conf
Parallel Bayesian Network Structure Learning for Genome-Scale Gene Networks.
SC
Sanchit Misra, Md. Vasimuddin, Kiran Pamnany, Sriram P. Chockalingam, Yong Dong, Min Xie, Maneesha R. Aluru, Srinivas Aluru
2013 J jnl
A survey of error-correction methods for next-generation sequencing.
Briefings Bioinform.
Xiao Yang, Sriram P. Chockalingam, Srinivas Aluru
2012 A conf
A Parallel Algorithm for Spectrum-based Short Read Error Correction.
IPDPS
Ankit Shah, Sriram P. Chockalingam, Srinivas Aluru