Sorin Istrail - RankMe

96 papers A* 10A 2B 17C 3Misc 2Journal 44Unranked 15

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Michael Waterman's Contributions to Computational Biology and Bioinformatics. J. Comput. Biol. Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail
2022	J	`jnl`	Special Issue: Professor Michael Waterman's 80th Birthday, Part 1. J. Comput. Biol. Sorin Istrail, Pavel A. Pevzner, Fengzhu Sun, Martin Vingron
2020	J	`jnl`	Combinatorial and statistical prediction of gene expression from haplotype sequence. Bioinform. Berk A. Alpay, Pinar Demetci, Sorin Istrail, Derek Aguiar
2020	J	`jnl`	Preface Special Issue: RECOMB 2018. J. Comput. Biol. Sorin Istrail
2019	J	`jnl`	Eric Davidson's Regulatory Genome for Computer Science: Causality, Logic, and Proof Principles of the Genomic J. Comput. Biol. Sorin Istrail
2019	J	`jnl`	How Does the Regulatory Genome Work? J. Comput. Biol. Sorin Istrail, Isabelle S. Peter
2015	B	`conf`	Utilizing image-based features in biomedical document classification. ICIP Kaidi Ma, Hogyeong Jeong, M. V. Rohith, Gowri Somanath, Ryan Tarpine, Kyle Schutter, Dorothea Blostein, Sorin Istrail, Chandra Kambhamettu, Hagit Shatkay
2014	J	`jnl`	Thermodynamic Hypothesis as Social Choice: An Impossibility Theorem for Protein Folding. CoRR Hammurabi Mendes, Sorin Istrail
2014	B	`conf`	Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts. RECOMB Derek Aguiar, Eric M. Morrow, Sorin Istrail
2014	Misc	`conf`	Tumor Haplotype Assembly Algorithms for Cancer Genomics. Pacific Symposium on Biocomputing Derek Aguiar, Wendy S. W. Wong, Sorin Istrail
2013	J	`jnl`	Haplotype assembly in polyploid genomes and identical by descent shared tracts. Bioinform. Derek Aguiar, Sorin Istrail
2012	—	`conf`	Alan Turing and John von Neumann - Their Brains and Their Computers. Int. Conf. on Membrane Computing Sorin Istrail, Solomon Marcus
2012	J	`jnl`	DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism. Bioinform. Derek Aguiar, Bjarni V. Halldórsson, Eric M. Morrow, Sorin Istrail
2012	J	`jnl`	HapCompass: A Fast Cycle Basis Algorithm for Accurate Haplotype Assembly of Sequence Data. J. Comput. Biol. Derek Aguiar, Sorin Istrail
2012	—	`ed.`	IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, USA, February 23-25, 2012 ICCABS Sorin Istrail, Ion I. Mandoiu, Mihai Pop, Sanguthevar Rajasekaran, John L. Spouge
2012	—	`conf`	OCR-Based Image Features for Biomedical Image and Article Classification: Identifying Documents Relevant to Genomic Cis-Regulatory Elements. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text Hagit Shatkay, Ramya Narayanaswamy, Santosh S. Nagaral, Na Harrington, M. V. Rohith, Gowri Somanath, Ryan Tarpine, Kyle Schutter, Tim Johnstone, Dorothea Blostein, Sorin Istrail, Chandra Kambhamettu
2012	—	`conf`	OCR-based image features for biomedical image and article classification: identifying documents relevant to cis-regulatory elements. BCB Hagit Shatkay, Ramya Narayanaswamy, Santosh S. Nagaral, Na Harrington, M. V. Rohith, Gowri Somanath, Ryan Tarpine, Kyle Schutter, Tim Johnstone, Dorothea Blostein, Sorin Istrail, Chandra Kambhamettu
2012	J	`jnl`	QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads. Silico Biol. Austin Huang, Rami Kantor, Allison DeLong, Leeann Schreier, Sorin Istrail
2012	—	`conf`	Workshop: Robust algorithms for inferring haplotype phase and deletion polymorphism from high-throughput whole genome sequence data. ICCABS Derek Aguiar, Sorin Istrail
2012	J	`jnl`	dbPTB: a database for preterm birth. Database J. Biol. Databases Curation Alper Uzun, Alyse Laliberte, Jeremy Parker, Caroline Andrew, Emily Winterrowd, Surendra Sharma, Sorin Istrail, James Padbury
2011	B	`conf`	Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection. RECOMB Ryan Tarpine, Fumei Lam, Sorin Istrail
2011	Misc	`conf`	Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants. Pacific Symposium on Biocomputing Bjarni V. Halldórsson, Derek Aguiar, Sorin Istrail
2011	—	`conf`	QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads. BIBM Workshops Austin Huang, Rami Kantor, Allison DeLong, Leeann Schreier, Sorin Istrail
2011	J	`jnl`	The Clark Phaseable Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. J. Comput. Biol. Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail
2010	B	`conf`	The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. RECOMB Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail
2010	J	`jnl`	The Imperfect Ancestral Recombination Graph Reconstruction Problem: Upper Bounds for Recombination and Homoplasy. J. Comput. Biol. Fumei Lam, Ryan Tarpine, Sorin Istrail
2009	J	`jnl`	Combinatorial Algorithms for Protein Folding in Lattice Models: A Survey of Mathematical Results. Commun. Inf. Syst. Sorin Istrail, Fumei Lam
2009	—	`conf`	On the Concept of Cis-regulatory Information: From Sequence Motifs to Logic Functions. Algorithmic Bioprocesses Ryan Tarpine, Sorin Istrail
2007	J	`jnl`	Preface. Discret. Appl. Math. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
2006	J	`jnl`	Islands of Tractability for Parsimony Haplotyping. IEEE ACM Trans. Comput. Biol. Bioinform. Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail
2006	B	`ed.`	Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings RECOMB Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2005	J	`jnl`	Finding Anchors for Genomic Sequence Comparison. J. Comput. Biol. Ross A. Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail
2005	—	`conf`	Islands of Tractability for Parsimony Haplotyping. CSB Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail
2005	C	`conf`	Logic Functions of the Genomic Cis-regulatory Code. UC Eric H. Davidson, Sorin Istrail
2005	J	`jnl`	Polynomial and APX-hard cases of the individual haplotyping problem. Theor. Comput. Sci. Vineet Bafna, Sorin Istrail, Giuseppe Lancia, Romeo Rizzi
2005	B	`ed.`	Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings RECOMB Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2004	J	`jnl`	1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap. J. Comput. Biol. Alberto Caprara, Robert D. Carr, Sorin Istrail, Giuseppe Lancia, Brian Walenz
2004	—	`ed.`	Computational Methods for SNPs and Haplotype Inference, DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised Papers Computational Methods for SNPs and Haplotype Inference Sorin Istrail, Michael S. Waterman, Andrew G. Clark
2004	B	`conf`	Finding anchors for genomic sequence comparison. RECOMB Ross Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail
2003	—	`conf`	Combinatorial Problems Arising in SNP and Haplotype Analysis. DMTCS Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
2003	—	`conf`	Epitope Prediction Algorithms for Peptide based Vaccine Design. CSB Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail
2003	B	`conf`	Haplotypes and informative SNP selection algorithms: don't block out information. RECOMB Vineet Bafna, Bjarni V. Halldórsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail
2003	—	`ed.`	Mathematical Methods for Protein Structure Analysis and Design, Advanced Lectures Mathematical Methods for Protein Structure Analysis and Design Concettina Guerra, Sorin Istrail
2003	B	`ed.`	Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003 RECOMB Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller
2003	—	`conf`	Protein Structure Comparison: Algorithms and Applications. Mathematical Methods for Protein Structure Analysis and Design Giuseppe Lancia, Sorin Istrail
2003	J	`jnl`	Robustness of Inference of Haplotype Block Structure. J. Comput. Biol. Russell Schwartz, Bjarni V. Halldórsson, Vineet Bafna, Andrew G. Clark, Sorin Istrail
2003	—	`conf`	The Minimum Informative Subset Problem. BIOKDD Sorin Istrail
2002	—	`conf`	A Survey of Computational Methods for Determining Haplotypes. Computational Methods for SNPs and Haplotype Inference Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
2002	J	`jnl`	Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. Briefings Bioinform. Ross Lippert, Russell Schwartz, Giuseppe Lancia, Sorin Istrail
2002	—	`conf`	Inferring Piecewise Ancestral History from Haploid Sequences. Computational Methods for SNPs and Haplotype Inference Russell Schwartz, Andrew G. Clark, Sorin Istrail
2002	C	`conf`	Methods for Inferring Block-Wise Ancestral History from Haploid Sequences. WABI Russell Schwartz, Andrew G. Clark, Sorin Istrail
2002	C	`conf`	Practical Algorithms and Fixed-Parameter Tractability for the Single Individual SNP Haplotyping Problem. WABI Romeo Rizzi, Vineet Bafna, Sorin Istrail, Giuseppe Lancia
2002	B	`ed.`	Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002 RECOMB Gene Myers, Sridhar Hannenhalli, David Sankoff, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2001	B	`conf`	101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem. RECOMB Giuseppe Lancia, Robert D. Carr, Brian Walenz, Sorin Istrail
2001	A	`conf`	SNPs Problems, Complexity, and Algorithms. ESA Giuseppe Lancia, Vineet Bafna, Sorin Istrail, Ross Lippert, Russell Schwartz
2001	—	`conf`	Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
2000	A*	`conf`	Algorithmic strategies in combinatorial chemistry. SODA Deborah Goldman, Sorin Istrail, Giuseppe Lancia, Antonio Piccolboni, Brian Walenz
2000	J	`jnl`	Foreword. Discret. Appl. Math. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
2000	J	`jnl`	Invariant Patterns in Crystal Lattices: Implications for Protein Folding Algorithms. J. Univers. Comput. Sci. William E. Hart, Sorin Istrail
2000	B	`ed.`	Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000 RECOMB Ron Shamir, Satoru Miyano, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2000	A*	`conf`	Statistical mechanics, three-dimensionality and NP-completeness: I. Universality of intracatability for the partition function of the Ising model across non-planar surfaces (extended abstract). STOC Sorin Istrail
1999	A*	`conf`	Algorithmic Aspects of Protein Structure Similarity. FOCS Deborah Goldman, Sorin Istrail, Christos H. Papadimitriou
1999	J	`jnl`	Lattice Simulations of Aggregation Funnels for Protein Folding. J. Comput. Biol. Sorin Istrail, Russell Schwartz, Jonathan A. King
1999	B	`conf`	Physical Mapping with Repeated Probes: The Hypergraph Superstring Problem. CPM Serafim Batzoglou, Sorin Istrail
1999	J	`jnl`	Preface: Special RECOMB'99 Issue. J. Comput. Biol. Sorin Istrail
1999	B	`ed.`	Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, RECOMB 1999, Lyon, France, April 11-14, 1999 RECOMB Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
1998	J	`jnl`	Foreword. Discret. Appl. Math. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
1998	B	`ed.`	Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, RECOMB 1998, New York, NY, USA, March 22-25, 1998 RECOMB Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
1997	J	`jnl`	Lattice and Off-Lattice Side Chain Models of Protein Folding: Linear Time Structure Prediction Better than 86% of Optimal. J. Comput. Biol. William E. Hart, Sorin Istrail
1997	B	`conf`	Lattice and off-lattice side chain models of protein folding (extended abstract): linear time structure prediction better than 86% of optimal. RECOMB William E. Hart, Sorin Istrail
1997	J	`jnl`	Robust Proofs of NP-Hardness for Protein Folding: General Lattices and Energy Potentials. J. Comput. Biol. William E. Hart, Sorin Istrail
1997	J	`jnl`	Selected Papers from RECOMB'97 - Preface. J. Comput. Biol. Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner
1996	J	`jnl`	Fast Protein Folding in the Hydrophobic-Hydrophillic Model within Three-Eights of Optimal. J. Comput. Biol. William E. Hart, Sorin Istrail
1996	B	`conf`	Invariant Patterns in Crystal Lattices: Implications for Protein Folding Algorithms (Extended Abstract). CPM William E. Hart, Sorin Istrail
1995	J	`jnl`	Bisimulation Can't be Traced. J. ACM Bard Bloom, Sorin Istrail, Albert R. Meyer
1995	A*	`conf`	Fast protein folding in the hydrophobic-hydrophilic model within three-eights of optimal (Extended Abstract). STOC William E. Hart, Sorin Istrail
1995	J	`jnl`	Physical Mapping by STS Hybridization: Algorithmic Strategies and the Challenge of Software Evaluation. J. Comput. Biol. David S. Greenberg, Sorin Istrail
1994	J	`jnl`	Bounded-Width Polynomial-Size Boolean Formulas Compute Exactly Those Functions in AC^0. Inf. Process. Lett. Sorin Istrail, Dejan Zivkovic
1994	J	`jnl`	The Chimeric Mapping Problem: Algorithmic Strategies and Performance Evaluation on Synthetic Genomic Data. Comput. Chem. David S. Greenberg, Sorin Istrail
1993	A	`conf`	A Non-Probabilistic Switching Lemma for the Sipser Function. STACS Sorin Istrail, Dejan Zivkovic
1992	J	`jnl`	The Pagenumber of Genus g Graphs is O(g). J. ACM Lenwood S. Heath, Sorin Istrail
1990	A*	`conf`	Constructing Generalized Universal Traversing Sequences of Polynomial Size for Graphs with Small Diameter (Extended Abstract) FOCS Sorin Istrail
1989	J	`jnl`	An Arithmetical Hierarchy in Propositional Dynamic Logic Inf. Comput. Sorin Istrail
1988	A*	`conf`	Bisimulation Can't Be Traced. POPL Bard Bloom, Sorin Istrail, Albert R. Meyer
1988	A*	`conf`	Polynomial Universal Traversing Sequences for Cycles Are Constructible (Extended Abstract) STOC Sorin Istrail
1987	A*	`conf`	The Pagenumber of Genus g Graphs is O(g) STOC Lenwood S. Heath, Sorin Istrail
1983	—	`conf`	Nivat-Processing Systems: Decision Problems Related to Protection and Synchronization. CAAP Sorin Istrail, Cristian Masalagiu
1983	J	`jnl`	Nivats's Processing Systems: Decision Problems Related to Protection and Synchronization. Theor. Comput. Sci. Sorin Istrail, Cristian Masalagiu
1982	J	`jnl`	Generalization of the Ginsburg-Rice Schützenberger Fixed-Point Theorem for Context-Sensitive and Recursive-Enumerable Languages. Theor. Comput. Sci. Sorin Istrail
1982	J	`jnl`	Some Remarks on Non-Algebraic Adherences. Theor. Comput. Sci. Sorin Istrail
1981	A*	`conf`	Chomsky-Schützenberger Representations for Families of Languages and Grammatical Types. ICALP Sorin Istrail
1979	A*	`conf`	A Fixed-Point Theorem for Recursive-Enumerable Languages and Some Considerations About Fixed-Point Semantics of Monadic Programs. ICALP Sorin Istrail
1979	J	`jnl`	On Complements of Some Bounded Context-Sensitive Languages Inf. Control. Sorin Istrail
1978	J	`jnl`	Computing grammars and contex-sensitive languages. RAIRO Theor. Informatics Appl. Sorin Istrail, Dan A. Simovici
1978	J	`jnl`	Elementary Bounded Languages Inf. Control. Sorin Istrail
1978	J	`jnl`	Tag Systems Generating Thue Irreducible Sequences. Inf. Process. Lett. Sorin Istrail