Sorin Draghici

76 papers B 6C 4Misc 5Journal 46Unranked 14
YearRankTypeTitle / Venue / Authors
2024 J jnl
LmRaC: a functionally extensible tool for LLM interrogation of user experimental results.
Bioinform.
Douglas B. Craig, Sorin Draghici
2024 — conf
What's the data say? An LLM-based system for interrogating experimental data.
BIBM
Douglas B. Craig, Sorin Draghici
2021 J jnl
COVID-19: disease pathways and gene expression changes predict methylprednisolone can improve outcome in severe cases.
Bioinform.
Sorin Draghici, Tuan-Minh Nguyen, Larry A. Sonna, Cordelia Ziraldo, Radu Vanciu, Raef Fadel, Austin Morrison, Rachel M. Kenney, George Alangaden, Mayur Ramesh, Gil Mor
2021 J jnl
CPA: a web-based platform for consensus pathway analysis and interactive visualization.
Nucleic Acids Res.
Hung Nguyen, Duc Tran, Jonathan M. Galazka, Sylvain V. Costes, Afshin Beheshti, Juli Petereit, Sorin Draghici, Tin Nguyen
2020 J jnl
GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis.
Bioinform.
Adib Shafi, Tin Nguyen, Azam Peyvandi-Pour, Sorin Draghici
2020 Misc conf
Integrated Cancer Subtyping using Heterogeneous Genome-Scale Molecular Datasets.
PSB
Suzan Arslanturk, Sorin Draghici, Tin Nguyen
2019 J jnl
A new computational drug repurposing method using established disease-drug pair knowledge.
Bioinform.
Nafiseh Saberian, Azam Peyvandi-Pour, Michele Donato, Sahar Ansari, Sorin Draghici
2019 J jnl
PINSPlus: a tool for tumor subtype discovery in integrated genomic data.
Bioinform.
Hung Nguyen, Sangam Shrestha, Sorin Draghici, Tin Nguyen
2018 J jnl
A novel computational approach for drug repurposing using systems biology.
Bioinform.
Azam Peyvandi-Pour, Nafiseh Saberian, Adib Shafi, Michele Donato, Sorin Draghici
2018 J jnl
A survey of the approaches for identifying differential methylation using bisulfite sequencing data.
Briefings Bioinform.
Adib Shafi, Cristina Mitrea, Tin Chi Nguyen, Sorin Draghici
2018 — conf
Disease Subtyping using Somatic Variant Data.
BCB
Suzan Arslanturk, Sorin Draghici
2018 J jnl
Integrating 5hmC and gene expression data to infer regulatory mechanisms.
Bioinform.
Cristina Mitrea, Priyanga Wijesinghe, Gregory Dyson, Adéle Kruger, Douglas M. Ruden, Sorin Draghici, Aliccia Bollig-Fischer
2017 J jnl
A Novel Pathway Analysis Approach Based on the Unexplained Disregulation of Genes.
Proc. IEEE
Sahar Ansari, Calin Voichita, Michele Donato, Rebecca Tagett, Sorin Draghici
2017 J jnl
An approach to infer putative disease-specific mechanisms using neighboring gene networks.
Bioinform.
Sahar Ansari, Michele Donato, Nafiseh Saberian, Sorin Draghici
2017 J jnl
DANUBE: Data-Driven Meta-ANalysis Using UnBiased Empirical Distributions - Applied to Biological Pathway Analysis.
Proc. IEEE
Tin Chi Nguyen, Cristina Mitrea, Rebecca Tagett, Sorin Draghici
2017 Misc conf
MicroRNA-Augmented Pathways (mirAP) and Their Applications to Pathway Analysis and Disease Subtyping.
PSB
Diana Diaz, Michele Donato, Tin Nguyen, Sorin Draghici
2016 — conf
A Systems Biology Approach for Unsupervised Clustering of High-Dimensional Data.
MOD
Diana Diaz, Tin Chi Nguyen, Sorin Draghici
2016 J jnl
A novel bi-level meta-analysis approach: applied to biological pathway analysis.
Bioinform.
Tin Chi Nguyen, Rebecca Tagett, Michele Donato, Cristina Mitrea, Sorin Draghici
2016 — conf
TOMAS: A novel TOpology-aware Meta-Analysis approach applied to System biology.
BCB
Tin Chi Nguyen, Diana Diaz, Sorin Draghici
2015 — conf
A systems biology approach for the identification of significantly perturbed genes.
BCB
Adib Shafi, Michele Donato, Sorin Draghici
2014 J jnl
Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion.
Bioinform.
Aliccia Bollig-Fischer, Luca Marchetti, Cristina Mitrea, Jiusheng Wu, Adéle Kruger, Vincenzo Manca, Sorin Draghici
2014 J jnl
The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio.
Bioinform.
Jim Cavalcoli, Lonnie R. Welch, Bruce J. Aronow, Sorin Draghici, Daisuke Kihara
2013 B conf
A genetic algorithms framework for estimating individual gene contributions in signaling pathways.
IEEE Congress on Evolutionary Computation
Calin Voichita, Michele Donato, Sorin Draghici
2013 J jnl
Assessing co-regulation of directly linked genes in biological networks using microarray time series analysis.
Biosyst.
Maria Rosaria Del Sorbo, Walter Balzano, Michele Donato, Sorin Draghici
2013 J jnl
Distilled Single Cell Genome Sequencing and De Novo Assembly for Sparse Microbial Communities
CoRR
Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici, Hamidreza Chitsaz
2013 J jnl
Distilled single-cell genome sequencing and
Bioinform.
Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici, Hamidreza Chitsaz
2013 J jnl
Z-Bag: a Classification Ensemble System with posterior Probabilistic outputs.
Comput. Intell.
Zhonghui Xu, Calin Voichita, Sorin Draghici, Roberto Romero
2012 B conf
A method for analysis and correction of cross-talk effects in pathway analysis.
IJCNN
Michele Donato, Sorin Draghici, Alin Tomoiaga, Peter Westfall, Zhonghui Xu, Roberto Romero
2012 J jnl
Detecting Phenotype-Specific Interactions between Biological Processes from Microarray Data and Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform.
Nadeem Ansari, Riyue Bao, Calin Voichita, Sorin Draghici
2012 J jnl
Down-weighting overlapping genes improves gene set analysis.
BMC Bioinform.
Adi L. Tarca, Sorin Draghici, Gaurav Bhatti, Roberto Romero
2012 — conf
Incorporating Gene Significance in the Impact Analysis of Signaling Pathways.
ICMLA (1)
Calin Voichita, Michele Donato, Sorin Draghici
2012 — conf
MDAsim: A multiple displacement amplification simulator.
BIBM
Zeinab Tagliavi, Sorin Draghici
2011 J jnl
The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways.
Bioinform.
Luca Beltrame, Enrica Calura, Razvan R. Popovici, Lisa Rizzetto, Damariz Rivero Guedez, Michele Donato, Chiara Romualdi, Sorin Draghici, Duccio Cavalieri
2010 J jnl
Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform.
Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici
2010 B conf
Signaling pathways coupling phenomena.
IJCNN
Michele Donato, Sorin Draghici
2010 C ed.
The Ninth International Conference on Machine Learning and Applications, ICMLA 2010, Washington, DC, USA, 12-14 December 2010
ICMLA
Sorin Draghici, Taghi M. Khoshgoftaar, Vasile Palade, Witold Pedrycz, M. Arif Wani, Xingquan Zhu
2009 J jnl
A novel signaling pathway impact analysis.
Bioinform.
Adi L. Tarca, Sorin Draghici, Purvesh Khatri, Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong Jai Kim, Juan Pedro Kusanovic, Roberto Romero
2008 B conf
Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls.
IJCNN
Calin Voichita, Purvesh Khatri, Sorin Draghici
2008 J jnl
KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours.
Bioinform.
Sorin Draghici, Adi L. Tarca, Longfei Yu, Stephen Ethier, Roberto Romero
2007 C conf
A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks.
CIARP
Purvesh Khatri, Sorin Draghici, Adi L. Tarca, Sonia S. Hassan, Roberto Romero
2007 J jnl
Machine Learning and Its Applications to Biology.
PLoS Comput. Biol.
Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Draghici
2007 J jnl
Onto-Tools: new additions and improvements in 2006.
Nucleic Acids Res.
Purvesh Khatri, Calin Voichita, Khalid Kattan, Nadeem Ansari, Avani Khatri, Constantin Georgescu, Adi L. Tarca, Sorin Draghici
2007 C conf
Semantic Analysis of Genome Annotations using Weighting Schemes.
CIBCB
Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici
2006 J jnl
Babel's tower revisited: a universal resource for cross-referencing across annotation databases.
Bioinform.
Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri
2006 J jnl
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.
Nucleic Acids Res.
Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivakumar Sellamuthu, Derek E. Wildman, Roberto Romero, Sorin Draghici
2005 C conf
A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites.
CIBCB
Valmik Desai, Purvesh Khatri, Arina Done, Aviva Friedman, Michael A. Tainsky, Sorin Draghici
2005 J jnl
A semantic analysis of the annotations of the human genome.
Bioinform.
Purvesh Khatri, Bogdan Done, Archana Rao, Arina Done, Sorin Draghici
2005 J jnl
Application of an objective method for localizing bilateral cortical FDG PET abnormalities to guide the resection of epileptic foci.
IEEE Trans. Biomed. Eng.
Otto Muzik, Siamak Pourabdollah, Csaba Juhász, Diane C. Chugani, James Janisse, Sorin Draghici
2005 Misc conf
Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats.
Pacific Symposium on Biocomputing
Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman
2005 J jnl
Ontological analysis of gene expression data: current tools, limitations, and open problems.
Bioinform.
Purvesh Khatri, Sorin Draghici
2005 J jnl
Recent additions and improvements to the Onto-Tools.
Nucleic Acids Res.
Purvesh Khatri, Sivakumar Sellamuthu, Pooja Malhotra, Kashyap Amin, Arina Done, Sorin Draghici
2004 J jnl
Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells.
BMC Bioinform.
Bin Yao, Sanjay N. Rakhade, Qunfang Li, Sharlin Ahmed, Raul Krauss, Sorin Draghici, Jeffrey A. Loeb
2004 J jnl
Discovering Document Semantics QBYS: A System for Querying the WWW by Semantics.
Multim. Tools Appl.
Michael Johnson, Farshad Fotouhi, Sorin Draghici, Ming Dong, Duo Xu
2004 J jnl
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments.
Nucleic Acids Res.
Purvesh Khatri, Pratik Bhavsar, Gagandeep Bawa, Sorin Draghici
2003 — conf
A Back Propagation Neural Network for Localizing Abnormal Cortical Regions in FDG PET Images in Epileptic Children.
IWANN (2)
Siamak Pourabdollah, Otto Muzik, Sorin Draghici
2003 — conf
Cancer Prediction by Protein Microarray Profiling.
Neural Networks and Computational Intelligence
Sorin Draghici, Korkut Uygun, Xiaoju Wang, Mita Chatterjee, Michael A. Tainsky
2003 J jnl
Mining HIV Dynamics Using Independent Component Analysis.
Bioinform.
Sorin Draghici, Frank M. Graziano, Samira Y. Kettoola, Ishwar K. Sethi, George Towfic
2003 J jnl
Noise Sampling Method: An ANOVA Approach Allowing Robust Selection of Differentially Regulated Genes Measured by DNA Microarrays.
Bioinform.
Sorin Draghici, Olga Kulaeva, Bruce Hoff, Anton Petrov, Soheil Shams, Michael A. Tainsky
2003 J jnl
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.
Nucleic Acids Res.
Sorin Draghici, Purvesh Khatri, Pratik Bhavsar, Abhik Shah, Stephen A. Krawetz, Michael A. Tainsky
2003 J jnl
Predicting HIV drug resistance with neural networks.
Bioinform.
Sorin Draghici, R. Brian Potter
2002 Misc conf
A SOFM Approach to Predicting HIV Drug Resistance.
Pacific Symposium on Biocomputing
R. Brian Potter, Sorin Draghici
2002 J jnl
On the capabilities of neural networks using limited precision weights.
Neural Networks
Sorin Draghici
2002 J jnl
Space-filling curves and Kolmogorov superposition-based neural networks.
Neural Networks
David A. Sprecher, Sorin Draghici
2001 J jnl
The constraint based decomposition (CBD) training architecture.
Neural Networks
Sorin Draghici
2000 — conf
Correlation of HIV protease structure with Indinavir resistance: a data mining and neural networks approach.
Data Mining and Knowledge Discovery: Theory, Tools, and Technology
Sorin Draghici, Lonnie T. Cumberland Jr., Ladislau C. Kovari
2000 J jnl
Neural Networks in Analog Hardware - Design and Implementation Issues.
Int. J. Neural Syst.
Sorin Draghici
1999 J jnl
A Constructive Approach to Calculating Lower Entropy Bounds.
Neural Process. Lett.
Valeriu Beiu, Sorin Draghici, Thierry de Pauw
1999 B conf
A VLSI neural network classifier based on integer-valued weights.
IJCNN
Sorin Draghici, Damon A. Miller
1999 — conf
On the Computational Power of Limited Precision Weights Neutral Networks in Classification Problems: How to Calculate the Weight Range so that a Solution Will Exist.
IWANN (1)
Sorin Draghici
1999 B conf
Some new results on the capabilities of integer weights neural networks in classification problems.
IJCNN
Sorin Draghici
1998 — conf
On the Complexity of VLSI-Friendly Neural Networks for Classification Problems.
Canadian AI
Sorin Draghici
1997 J jnl
A Neural Network Based Artificial Vision System for Licence Plate Recognition.
Int. J. Neural Syst.
Sorin Draghici
1997 — conf
On limited fan-in optimal neural networks.
SBRN
Valeriu Beiu, Sorin Draghici, Hanna E. Makaruk
1997 Misc conf
On the Possibilities of the Limited Precision Weights Neural Networks in Classification Problems.
IWANN
Sorin Draghici, Ishwar K. Sethi
1996 — conf
Some enhancements of the constraint based decomposition training architecture.
ICNN
Sorin Draghici
1996 — —
Using constraints to improve generalisation and training of feedforward neural networks: constraint based decomposition and complex backpropagation.
Sorin Draghici