Sophie Schbath

25 papers Journal 22Unranked 2
YearRankTypeTitle / Venue / Authors
2020 J jnl
DUGMO: tool for the detection of unknown genetically modified organisms with high-throughput sequencing data for pure bacterial samples.
BMC Bioinform.
Julie Hurel, Sophie Schbath, Stéphanie Bougeard, Mathieu Rolland, Mauro Petrillo, Fabrice Touzain
2020 J jnl
SimkaMin: fast and resource frugal de novo comparative metagenomics.
Bioinform.
Gaëtan Benoit, Mahendra Mariadassou, Stéphane Robin, Sophie Schbath, Pierre Peterlongo, Claire Lemaitre
2016 J jnl
Multiple comparative metagenomics using multiset
PeerJ Comput. Sci.
Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre
2012 J jnl
Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis.
J. Comput. Biol.
Sophie Schbath, Véronique Martin, Matthias Zytnicki, Julien Fayolle, Valentin Loux, Jean-François Gibrat
2012 J jnl
Separating Significant Matches from Spurious Matches in DNA Sequences.
J. Comput. Biol.
Hugo Devillers, Sophie Schbath
2012 J jnl
Statistical Significance of Threading Scores.
J. Comput. Biol.
Afshin Fayyaz Movaghar, Guillaume Launay, Sophie Schbath, Jean-François Gibrat, François Rodolphe
2011 J jnl
Occurrence of structured motifs in random sequences: Arbitrary number of boxes.
Discret. Appl. Math.
Valery T. Stefanov, Stéphane Robin, Sophie Schbath
2011 J jnl
Robustness Assessment of Whole Bacterial Genome Segmentations.
J. Comput. Biol.
Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui
2010 — conf
Assessing the Robustness of Complete Bacterial Genome Segmentations.
RECOMB-CG
Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui
2010 — conf
Using graph modularity analysis to identify transcription factor binding sites.
BIBM Workshops
Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira
2009 J jnl
Assessing the Exceptionality of Coloured Motifs in Networks.
EURASIP J. Bioinform. Syst. Biol.
Sophie Schbath, Vincent Lacroix, Marie-France Sagot
2008 J jnl
Assessing the Exceptionality of Network Motifs.
J. Comput. Biol.
Franck Picard, Jean-Jacques Daudin, Michel Koskas, Sophie Schbath, Stéphane Robin
2008 J jnl
SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics.
BMC Bioinform.
Fabrice Touzain, Sophie Schbath, Isabelle Debled-Rennesson, Bertrand Aigle, Gregory Kucherov, Pierre Leblond
2007 J jnl
Statistical tests to compare motif count exceptionalities.
BMC Bioinform.
Stéphane Robin, Sophie Schbath, Vincent Vandewalle
2007 J jnl
Waiting times for clumps of patterns and for structured motifs in random sequences.
Discret. Appl. Math.
Valery T. Stefanov, Stéphane Robin, Sophie Schbath
2002 J jnl
Numerical Comparison of Several Approximations of the Word Count Distribution in Random Sequences.
J. Comput. Biol.
Stéphane Robin, Sophie Schbath
2002 J jnl
Occurrence Probability of Structured Motifs in Random Sequences.
J. Comput. Biol.
Stéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath
2000 J jnl
An Overview on the Distribution of Word Counts in Markov Chains.
J. Comput. Biol.
Sophie Schbath
2000 J jnl
Probabilistic and Statistical Properties of Words: An Overview.
J. Comput. Biol.
Gesine Reinert, Sophie Schbath, Michael S. Waterman
2000 J jnl
The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project.
J. Comput. Biol.
Sophie Schbath, Nathalie Bossard, Simon Tavaré
1998 J jnl
Compound Poisson and Poisson Process Approximations for Occurrences of Multiple Words in Markov Chains.
J. Comput. Biol.
Gesine Reinert, Sophie Schbath
1997 J jnl
An Efficient Statistic to Detect Over-and Under-Represented Words in DNA Sequences.
J. Comput. Biol.
Sophie Schbath
1997 J jnl
Coverage Processes in Physical Mapping by Anchoring Random Clones.
J. Comput. Biol.
Sophie Schbath
1995 — —
Etude asymptotique du nombre d'occurrences d'un mot dans une chaîne de Markov et application à la recherche de mots de fréquence exceptionnelle dans les séquences d'ADN.
Sophie Schbath
1995 J jnl
Exceptional Motifs in Different Markov Chain Models for a Statistical Analysis of DNA Sequences.
J. Comput. Biol.
Sophie Schbath, Bernard Prum, Elisabeth de Turckheim