Sophia Ananiadou

444 papers A* 27A 12B 46C 8Misc 4Journal 214Unranked 111

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	All That Glisters Is Not Gold: A Benchmark for Reference-Free Counterfactual Financial Misinformation Detection. CoRR Yuechen Jiang, Zhiwei Liu, Yupeng Cao, Yueru He, Ziyang Xu, Chen Xu, Zhiyang Deng, Prayag Tiwari, Xi Chen, Alejandro Lopez-Lira, Jimin Huang, Junichi Tsujii, Sophia Ananiadou
2026	J	`jnl`	Can LLM Agents Be CFOs? A Benchmark for Resource Allocation in Dynamic Enterprise Environments. CoRR Yi Han, Lingfei Qian, Yan Wang, Yueru He, Xueqing Peng, Dongji Feng, Yankai Chen, Haohang Li, Yupeng Cao, Jimin Huang, Xue Liu, Jian-Yun Nie, Sophia Ananiadou
2026	J	`jnl`	Ebisu: Benchmarking Large Language Models in Japanese Finance. CoRR Xueqing Peng, Ruoyu Xiang, Fan Zhang, Mingzi Song, Mingyang Jiang, Yan Wang, Lingfei Qian, Taiki Hara, Yuqing Guo, Jimin Huang, Junichi Tsujii, Sophia Ananiadou
2026	J	`jnl`	Implicit Graph, Explicit Retrieval: Towards Efficient and Interpretable Long-horizon Memory for Large Language Models. CoRR Xin Zhang, Kailai Yang, Hao Li, Chenyue Li, Qiyu Wei, Sophia Ananiadou
2026	J	`jnl`	Locate, Steer, and Improve: A Practical Survey of Actionable Mechanistic Interpretability in Large Language Models. CoRR Hengyuan Zhang, Zhihao Zhang, Mingyang Wang, Zunhai Su, Yiwei Wang, Qianli Wang, Shuzhou Yuan, Ercong Nie, Xufeng Duan, Qibo Xue, Zeping Yu, Chenming Shang, Xiao Liang, Jing Xiong, Hui Shen, Chaofan Tao, Zhengwu Liu, Senjie Jin, Zhiheng Xi, Dongdong Zhang, Sophia Ananiadou, Tao Gui, Ruobing Xie, Hayden Kwok-Hay So, Hinrich Schütze, Xuanjing Huang, Qi Zhang, Ngai Wong
2026	J	`jnl`	MemAdapter: Fast Alignment across Agent Memory Paradigms via Generative Subgraph Retrieval. CoRR Xin Zhang, Kailai Yang, Chenyue Li, Hao Li, Qiyu Wei, Jun'ichi Tsujii, Sophia Ananiadou
2026	J	`jnl`	MisSpans: Fine-Grained False Span Identification in Cross-Domain Fake News. CoRR Zhiwei Liu, Paul Thompson, Jiaqi Rong, Baojie Qu, Runteng Guo, Min Peng, Qianqian Xie, Sophia Ananiadou
2026	C	`conf`	NOMAD: A Multi-Agent LLM System for UML Class Diagram Generation from Natural Language Requirements. MODELSWARD Polydoros Giannouris, Sophia Ananiadou
2026	A*	`conf`	Plan Then Retrieve: Reinforcement Learning-Guided Complex Reasoning over Knowledge Graphs. WWW Yanlin Song, Ben Liu, Víctor Gutiérrez-Basulto, Zhiwei Hu, Qianqian Xie, Min Peng, Sophia Ananiadou, Jeff Z. Pan
2026	J	`jnl`	RAAR: Retrieval Augmented Agentic Reasoning for Cross-Domain Misinformation Detection. CoRR Zhiwei Liu, Runteng Guo, Baojie Qu, Yuechen Jiang, Min Peng, Qianqian Xie, Sophia Ananiadou
2026	J	`jnl`	Same Claim, Different Judgment: Benchmarking Scenario-Induced Bias in Multilingual Financial Misinformation Detection. CoRR Zhiwei Liu, Yupen Cao, Yuechen Jiang, Mohsinul Kabir, Polydoros Giannouris, Chen Xu, Ziyang Xu, Tianlei Zhu, Tariquzzaman Faisal, Triantafillos Papadopoulos, Yan Wang, Lingfei Qian, Xueqing Peng, Zhuohan Xie, Ye Yuan, Saeed Almheiri, Abdulrazzaq Alnajjar, Mingbin Chen, Harry Stuart, Paul Thompson, Prayag Tiwari, Alejandro Lopez-Lira, Xue Liu, Jimin Huang, Sophia Ananiadou
2026	A*	`conf`	When Agents Trade: Live Multi-Market Trading Arena for LLM Agents. WWW Lingfei Qian, Xueqing Peng, Hanley Smith, Yi Han, Yueru He, Haohang Li, Yupeng Cao, Yangyang Yu, Guojun Xiong, Peng Lu, Yan Wang, Vincent Jim Zhang, Huan He, Alejandro Lopez-Lira, Jimin Huang, Jian-Yun Nie, Sophia Ananiadou
2026	J	`jnl`	XCR-Bench: A Multi-Task Benchmark for Evaluating Cultural Reasoning in LLMs. CoRR Mohsinul Kabir, Tasnim Ahmed, Md Mezbaur Rahman, Shaoxiong Ji, Hassan Alhuzali, Sophia Ananiadou
2025	A*	`conf`	Back Attention: Understanding and Enhancing Multi-Hop Reasoning in Large Language Models. EMNLP Zeping Yu, Yonatan Belinkov, Sophia Ananiadou
2025	J	`jnl`	Back Attention: Understanding and Enhancing Multi-Hop Reasoning in Large Language Models. CoRR Zeping Yu, Yonatan Belinkov, Sophia Ananiadou
2025	A*	`conf`	Break the Checkbox: Challenging Closed-Style Evaluations of Cultural Alignment in LLMs. EMNLP Mohsinul Kabir, Ajwad Abrar, Sophia Ananiadou
2025	J	`jnl`	Break the Checkbox: Challenging Closed-Style Evaluations of Cultural Alignment in LLMs. CoRR Mohsinul Kabir, Ajwad Abrar, Sophia Ananiadou
2025	A	`conf`	ConspEmoLLM-v2: A Robust and Stable Model to Detect Sentiment-Transformed Conspiracy Theories. ECAI Zhiwei Liu, Paul Thompson, Jiaqi Rong, Sophia Ananiadou
2025	J	`jnl`	ConspEmoLLM-v2: A robust and stable model to detect sentiment-transformed conspiracy theories. CoRR Zhiwei Liu, Paul Thompson, Jiaqi Rong, Sophia Ananiadou
2025	J	`jnl`	DITING: A Multi-Agent Evaluation Framework for Benchmarking Web Novel Translation. CoRR Enze Zhang, Jiaying Wang, Mengxi Xiao, Jifei Liu, Ziyan Kuang, Rui Dong, Eric Dong, Sophia Ananiadou, Min Peng, Qianqian Xie
2025	J	`jnl`	Disentangled VAD Representations via a Variational Framework for Political Stance Detection. CoRR Beiyu Xu, Zhiwei Liu, Sophia Ananiadou
2025	B	`conf`	ELAINE-medLLM: Lightweight English Japanese Chinese Trilingual Large Language Model for Bio-medical Domain. COLING Ken Yano, Zheheng Luo, Jimin Huang, Qianqian Xie, Masaki Asada, Chenhan Yuan, Kailai Yang, Makoto Miwa, Sophia Ananiadou, Jun'ichi Tsujii
2025	—	`conf`	EMPEC: A Comprehensive Benchmark for Evaluating Large Language Models Across Diverse Healthcare Professions. ACL (Findings) Zheheng Luo, Chenhan Yuan, Qianqian Xie, Sophia Ananiadou
2025	J	`jnl`	Enhancing Financial Time-Series Forecasting with Retrieval-Augmented Large Language Models. CoRR Mengxi Xiao, Zihao Jiang, Lingfei Qian, Zhengyu Chen, Yueru He, Yijing Xu, Yuechen Jiang, Dong Li, Ruey-Ling Weng, Min Peng, Jimin Huang, Sophia Ananiadou, Qianqian Xie
2025	J	`jnl`	Exploring Safety Alignment Evaluation of LLMs in Chinese Mental Health Dialogues via LLM-as-Judge. CoRR Yunna Cai, Fan Wang, Haowei Wang, Kun Wang, Kailai Yang, Sophia Ananiadou, Moyan Li, Mingming Fan
2025	—	`conf`	FLAG-TRADER: Fusion LLM-Agent with Gradient-based Reinforcement Learning for Financial Trading. ACL (Findings) Guojun Xiong, Zhiyang Deng, Keyi Wang, Yupeng Cao, Haohang Li, Yangyang Yu, Xueqing Peng, Mingquan Lin, Kaleb E. Smith, Xiao-Yang Liu, Jimin Huang, Sophia Ananiadou, Qianqian Xie
2025	J	`jnl`	FLAG-Trader: Fusion LLM-Agent with Gradient-based Reinforcement Learning for Financial Trading. CoRR Guojun Xiong, Zhiyang Deng, Keyi Wang, Yupeng Cao, Haohang Li, Yangyang Yu, Xueqing Peng, Mingquan Lin, Kaleb E. Smith, Xiao-Yang Liu, Jimin Huang, Sophia Ananiadou, Qianqian Xie
2025	—	`conf`	FMDLlama: Financial Misinformation Detection Based on Large Language Models. WWW (Companion Volume) Zhiwei Liu, Xin Zhang, Kailai Yang, Qianqian Xie, Jimin Huang, Sophia Ananiadou
2025	J	`jnl`	FinAudio: A Benchmark for Audio Large Language Models in Financial Applications. CoRR Yupeng Cao, Haohang Li, Yangyang Yu, Shashidhar Reddy Javaji, Yueru He, Jimin Huang, Zining Zhu, Qianqian Xie, Xiao-Yang Liu, Koduvayur Subbalakshmi, Meikang Qiu, Sophia Ananiadou, Jian-Yun Nie
2025	J	`jnl`	FinCriticalED: A Visual Benchmark for Financial Fact-Level OCR Evaluation. CoRR Yueru He, Xueqing Peng, Yupeng Cao, Yan Wang, Lingfei Qian, Haohang Li, Yi Han, Ruoyu Xiang, Mingquan Lin, Prayag Tiwari, Jimin Huang, Guojun Xiong, Sophia Ananiadou
2025	—	`conf`	FinNLP-FNP-LLMFinLegal-2025 Shared Task: Financial Misinformation Detection Challenge Task. COLING Workshops Zhiwei Liu, Keyi Wang, Zhuo Bao, Xin Zhang, Jiping Dong, Kailai Yang, Mohsinul Kabir, Polydoros Giannouris, Rui Xing, Seongchan Park, Jaehong Kim, Dong Li, Qianqian Xie, Sophia Ananiadou
2025	J	`jnl`	From Scores to Skills: A Cognitive Diagnosis Framework for Evaluating Financial Large Language Models. CoRR Ziyan Kuang, Feiyu Zhu, Maowei Jiang, Yanzhao Lai, Zelin Wang, Zhitong Wang, Meikang Qiu, Jiajia Huang, Min Peng, Qianqian Xie, Sophia Ananiadou
2025	—	`conf`	From n-gram to Attention: How Model Architectures Learn and Propagate Bias in Language Modeling. EMNLP (Findings) Mohsinul Kabir, Tasfia Tahsin, Sophia Ananiadou
2025	J	`jnl`	From n-gram to Attention: How Model Architectures Learn and Propagate Bias in Language Modeling. CoRR Mohsinul Kabir, Tasfia Tahsin, Sophia Ananiadou
2025	—	`conf`	IRIS: Rapid Curation Framework for Iterative Improvement of Noisy Named Entity Annotations. NLDB (2) Ken Yano, Makoto Miwa, Sophia Ananiadou
2025	—	`conf`	Locate-then-Merge: Neuron-Level Parameter Fusion for Mitigating Catastrophic Forgetting in Multimodal LLMs. EMNLP (Findings) Zeping Yu, Sophia Ananiadou
2025	J	`jnl`	Locate-then-Merge: Neuron-Level Parameter Fusion for Mitigating Catastrophic Forgetting in Multimodal LLMs. CoRR Zeping Yu, Sophia Ananiadou
2025	J	`jnl`	MMAFFBen: A Multilingual and Multimodal Affective Analysis Benchmark for Evaluating LLMs and VLMs. CoRR Zhiwei Liu, Lingfei Qian, Qianqian Xie, Jimin Huang, Kailai Yang, Sophia Ananiadou
2025	J	`jnl`	MentraSuite: Post-Training Large Language Models for Mental Health Reasoning and Assessment. CoRR Mengxi Xiao, Kailai Yang, Pengde Zhao, Enze Zhang, Ziyan Kuang, Zhiwei Liu, Weiguang Han, Shu Liao, Lianting Huang, Jinpeng Hu, Min Peng, Qianqian Xie, Sophia Ananiadou
2025	J	`jnl`	MultiFinBen: A Multilingual, Multimodal, and Difficulty-Aware Benchmark for Financial LLM Evaluation. CoRR Xueqing Peng, Lingfei Qian, Yan Wang, Ruoyu Xiang, Yueru He, Yang Ren, Mingyang Jiang, Jeff Zhao, Huan He, Yi Han, Yun Feng, Yuechen Jiang, Yupeng Cao, Haohang Li, Yangyang Yu, Xiaoyu Wang, Penglei Gao, Shengyuan Lin, Keyi Wang, Shanshan Yang, Yilun Zhao, Zhiwei Liu, Peng Lu, Jerry Huang, Suyuchen Wang, Triantafillos Papadopoulos, Polydoros Giannouris, Efstathia Soufleri, Nuo Chen, Guojun Xiong, Zhiyang Deng, Yijia Zhao, Mingquan Lin, Meikang Qiu, Kaleb E. Smith, Arman Cohan, Xiao-Yang Liu, Jimin Huang, Alejandro Lopez-Lira, Xi Chen, Junichi Tsujii, Jian-Yun Nie, Sophia Ananiadou, Qianqian Xie
2025	J	`jnl`	NOMAD: A Multi-Agent LLM System for UML Class Diagram Generation from Natural Language Requirements. CoRR Polydoros Giannouris, Sophia Ananiadou
2025	J	`jnl`	Natural Language Processing for Cardiology: A Narrative Review. CoRR Kailai Yang, Yan Leng, Xin Zhang, Tianlin Zhang, Paul Thompson, Bernard Keavney, Maciej Tomaszewski, Sophia Ananiadou
2025	J	`jnl`	Plan Then Retrieve: Reinforcement Learning-Guided Complex Reasoning over Knowledge Graphs. CoRR Yanlin Song, Ben Liu, Víctor Gutiérrez-Basulto, Zhiwei Hu, Qianqian Xie, Min Peng, Sophia Ananiadou, Jeff Z. Pan
2025	A*	`conf`	Plutus: Benchmarking Large Language Models in Low-Resource Greek Finance. EMNLP Xueqing Peng, Triantafillos Papadopoulos, Efstathia Soufleri, Polydoros Giannouris, Ruoyu Xiang, Yan Wang, Lingfei Qian, Jimin Huang, Qianqian Xie, Sophia Ananiadou
2025	J	`jnl`	Plutus: Benchmarking Large Language Models in Low-Resource Greek Finance. CoRR Xueqing Peng, Triantafillos Papadopoulos, Efstathia Soufleri, Polydoros Giannouris, Ruoyu Xiang, Yan Wang, Lingfei Qian, Jimin Huang, Qianqian Xie, Sophia Ananiadou
2025	—	`conf`	Proceedings of the Joint Workshop of the 9th Financial Technology and Natural Language Processing (FinNLP), the 6th Financial Narrative Processing (FNP), and the 1st Workshop on Large Language Models for Finance and Legal (LLMFinLegal). COLING Workshops Chung-Chi Chen, Antonio Moreno-Sandoval, Jimin Huang, Qianqian Xie, Sophia Ananiadou, Hsin-Hsi Chen
2025	—	`conf`	RAEmoLLM: Retrieval Augmented LLMs for Cross-Domain Misinformation Detection Using In-Context Learning Based on Emotional Information. ACL (1) Zhiwei Liu, Kailai Yang, Qianqian Xie, Christine de Kock, Sophia Ananiadou, Eduard H. Hovy
2025	J	`jnl`	Religious Bias Landscape in Language and Text-to-Image Models: Analysis, Detection, and Debiasing Strategies. CoRR Ajwad Abrar, Nafisa Tabassum Oeshy, Mohsinul Kabir, Sophia Ananiadou
2025	J	`jnl`	Rumor Detection by Multi-task Suffix Learning based on Time-series Dual Sentiments. CoRR Zhiwei Liu, Kailai Yang, Eduard H. Hovy, Sophia Ananiadou
2025	A*	`conf`	Selective Preference Optimization via Token-Level Reward Function Estimation. EMNLP Kailai Yang, Zhiwei Liu, Qianqian Xie, Jimin Huang, Erxue Min, Sophia Ananiadou
2025	J	`jnl`	Semantic Label Drift in Cross-Cultural Translation. CoRR Mohsinul Kabir, Tasnim Ahmed, Md Mezbaur Rahman, Polydoros Giannouris, Sophia Ananiadou
2025	—	`conf`	SynGraph: A Dynamic Graph-LLM Synthesis Framework for Sparse Streaming User Sentiment Modeling. ACL (Findings) Xin Zhang, Qiyu Wei, Yingjie Zhu, Linhai Zhang, Deyu Zhou, Sophia Ananiadou
2025	J	`jnl`	SynGraph: A Dynamic Graph-LLM Synthesis Framework for Sparse Streaming User Sentiment Modeling. CoRR Xin Zhang, Qiyu Wei, Yingjie Zhu, Linhai Zhang, Deyu Zhou, Sophia Ananiadou
2025	—	`conf`	THCM-CAL: Temporal-Hierarchical Causal Modelling with Conformal Calibration for Clinical Risk Prediction. EMNLP (Findings) Xin Zhang, Qiyu Wei, Yingjie Zhu, Fanyi Wu, Sophia Ananiadou
2025	J	`jnl`	THCM-CAL: Temporal-Hierarchical Causal Modelling with Conformal Calibration for Clinical Risk Prediction. CoRR Xin Zhang, Qiyu Wei, Yingjie Zhu, Fanyi Wu, Sophia Ananiadou
2025	J	`jnl`	Understanding and Mitigating Gender Bias in LLMs via Interpretable Neuron Editing. CoRR Zeping Yu, Sophia Ananiadou
2025	J	`jnl`	When Agents Trade: Live Multi-Market Trading Benchmark for LLM Agents. CoRR Lingfei Qian, Xueqing Peng, Yan Wang, Vincent Jim Zhang, Huan He, Hanley Smith, Yi Han, Yueru He, Haohang Li, Yupeng Cao, Yangyang Yu, Alejandro Lopez-Lira, Peng Lu, Jian-Yun Nie, Guojun Xiong, Jimin Huang, Sophia Ananiadou
2024	J	`jnl`	Are Large Language Models True Healthcare Jacks-of-All-Trades? Benchmarking Across Health Professions Beyond Physician Exams. CoRR Zheheng Luo, Chenhan Yuan, Qianqian Xie, Sophia Ananiadou
2024	J	`jnl`	Artificial intelligence (AI) futures: India-UK collaborations emerging from the 4th Royal Society Yusuf Hamied workshop. Int. J. Inf. Manag. Yogesh K. Dwivedi, Laurie Hughes, Harshad K. D. H. Bhadeshia, Sophia Ananiadou, Anthony G. Cohn, Jacqueline M. Cole, Gareth John Conduit, Maunendra Sankar Desarkar, Xinwei Wang
2024	A*	`conf`	Back to the Future: Towards Explainable Temporal Reasoning with Large Language Models. WWW Chenhan Yuan, Qianqian Xie, Jimin Huang, Sophia Ananiadou
2024	A	`conf`	ConspEmoLLM: Conspiracy Theory Detection Using an Emotion-Based Large Language Model. ECAI Zhiwei Liu, Boyang Liu, Paul Thompson, Kailai Yang, Sophia Ananiadou
2024	J	`jnl`	ConspEmoLLM: Conspiracy Theory Detection Using an Emotion-Based Large Language Model. CoRR Zhiwei Liu, Boyang Liu, Paul Thompson, Kailai Yang, Raghav Jain, Sophia Ananiadou
2024	J	`jnl`	Disentangled Variational Autoencoder for Emotion Recognition in Conversations. IEEE Trans. Affect. Comput. Kailai Yang, Tianlin Zhang, Sophia Ananiadou
2024	A*	`conf`	Dólares or Dollars? Unraveling the Bilingual Prowess of Financial LLMs Between Spanish and English. KDD Xiao Zhang, Ruoyu Xiang, Chenhan Yuan, Duanyu Feng, Weiguang Han, Alejandro Lopez-Lira, Xiao-Yang Liu, Meikang Qiu, Sophia Ananiadou, Min Peng, Jimin Huang, Qianqian Xie
2024	J	`jnl`	Dólares or Dollars? Unraveling the Bilingual Prowess of Financial LLMs Between Spanish and English. CoRR Xiao Zhang, Ruoyu Xiang, Chenhan Yuan, Duanyu Feng, Weiguang Han, Alejandro Lopez-Lira, Xiao-Yang Liu, Sophia Ananiadou, Min Peng, Jimin Huang, Qianqian Xie
2024	A*	`conf`	EmoLLMs: A Series of Emotional Large Language Models and Annotation Tools for Comprehensive Affective Analysis. KDD Zhiwei Liu, Kailai Yang, Qianqian Xie, Tianlin Zhang, Sophia Ananiadou
2024	J	`jnl`	EmoLLMs: A Series of Emotional Large Language Models and Annotation Tools for Comprehensive Affective Analysis. CoRR Zhiwei Liu, Kailai Yang, Tianlin Zhang, Qianqian Xie, Zeping Yu, Sophia Ananiadou
2024	J	`jnl`	Emotion detection for misinformation: A review. Inf. Fusion Zhiwei Liu, Tianlin Zhang, Kailai Yang, Paul Thompson, Zeping Yu, Sophia Ananiadou
2024	J	`jnl`	FMDLlama: Financial Misinformation Detection based on Large Language Models. CoRR Zhiwei Liu, Xin Zhang, Kailai Yang, Qianqian Xie, Jimin Huang, Sophia Ananiadou
2024	J	`jnl`	Factual Consistency Evaluation of Summarisation in the Era of Large Language Models. CoRR Zheheng Luo, Qianqian Xie, Sophia Ananiadou
2024	J	`jnl`	Factual consistency evaluation of summarization in the Era of large language models. Expert Syst. Appl. Zheheng Luo, Qianqian Xie, Sophia Ananiadou
2024	A*	`conf`	FinBen: A Holistic Financial Benchmark for Large Language Models. NeurIPS Qianqian Xie, Weiguang Han, Zhengyu Chen, Ruoyu Xiang, Xiao Zhang, Yueru He, Mengxi Xiao, Dong Li, Yongfu Dai, Duanyu Feng, Yijing Xu, Haoqiang Kang, Ziyan Kuang, Chenhan Yuan, Kailai Yang, Zheheng Luo, Tianlin Zhang, Zhiwei Liu, Guojun Xiong, Zhiyang Deng, Yuechen Jiang, Zhiyuan Yao, Haohang Li, Yangyang Yu, Gang Hu, Jiajia Huang, Xiao-Yang Liu, Alejandro Lopez-Lira, Benyou Wang, Yanzhao Lai, Hao Wang, Min Peng, Sophia Ananiadou, Jimin Huang
2024	J	`jnl`	Graph Contrastive Topic Model. Expert Syst. Appl. Zheheng Luo, Lei Liu, Sophia Ananiadou, Qianqian Xie
2024	A*	`conf`	HARMONIC: Harnessing LLMs for Tabular Data Synthesis and Privacy Protection. NeurIPS Yuxin Wang, Duanyu Feng, Yongfu Dai, Zhengyu Chen, Jimin Huang, Sophia Ananiadou, Qianqian Xie, Hao Wang
2024	J	`jnl`	HARMONIC: Harnessing LLMs for Tabular Data Synthesis and Privacy Protection. CoRR Yuxin Wang, Duanyu Feng, Yongfu Dai, Zhengyu Chen, Jimin Huang, Sophia Ananiadou, Qianqian Xie, Hao Wang
2024	A*	`conf`	How do Large Language Models Learn In-Context? Query and Key Matrices of In-Context Heads are Two Towers for Metric Learning. EMNLP Zeping Yu, Sophia Ananiadou
2024	J	`jnl`	How do Large Language Models Learn In-Context? Query and Key Matrices of In-Context Heads are Two Towers for Metric Learning. CoRR Zeping Yu, Sophia Ananiadou
2024	A*	`conf`	Interpreting Arithmetic Mechanism in Large Language Models through Comparative Neuron Analysis. EMNLP Zeping Yu, Sophia Ananiadou
2024	J	`jnl`	Interpreting Arithmetic Mechanism in Large Language Models through Comparative Neuron Analysis. CoRR Zeping Yu, Sophia Ananiadou
2024	J	`jnl`	Knowledge-Enhanced Graph Topic Transformer for Explainable Biomedical Text Summarization. IEEE J. Biomed. Health Informatics Qianqian Xie, Prayag Tiwari, Sophia Ananiadou
2024	J	`jnl`	Large Language Models in Mental Health Care: a Scoping Review. CoRR Yining Hua, Fenglin Liu, Kailai Yang, Zehan Li, Yi-han Sheu, Peilin Zhou, Lauren V. Moran, Sophia Ananiadou, Andrew Beam
2024	—	`conf`	LongDocFACTScore: Evaluating the Factuality of Long Document Abstractive Summarisation. LREC/COLING Jennifer Bishop, Sophia Ananiadou, Qianqian Xie
2024	A*	`conf`	MentaLLaMA: Interpretable Mental Health Analysis on Social Media with Large Language Models. WWW Kailai Yang, Tianlin Zhang, Ziyan Kuang, Qianqian Xie, Jimin Huang, Sophia Ananiadou
2024	J	`jnl`	MetaAligner: Conditional Weak-to-Strong Correction for Generalizable Multi-Objective Alignment of Language Models. CoRR Kailai Yang, Zhiwei Liu, Qianqian Xie, Tianlin Zhang, Nirui Song, Jimin Huang, Ziyan Kuang, Sophia Ananiadou
2024	A*	`conf`	MetaAligner: Towards Generalizable Multi-Objective Alignment of Language Models. NeurIPS Kailai Yang, Zhiwei Liu, Qianqian Xie, Jimin Huang, Tianlin Zhang, Sophia Ananiadou
2024	A*	`conf`	Neuron-Level Knowledge Attribution in Large Language Models. EMNLP Zeping Yu, Sophia Ananiadou
2024	J	`jnl`	No Language is an Island: Unifying Chinese and English in Financial Large Language Models, Instruction Data, and Benchmarks. CoRR Gang Hu, Ke Qin, Chenhan Yuan, Min Peng, Alejandro Lopez-Lira, Benyou Wang, Sophia Ananiadou, Wanlong Yu, Jimin Huang, Qianqian Xie
2024	J	`jnl`	Open-FinLLMs: Open Multimodal Large Language Models for Financial Applications. CoRR Qianqian Xie, Dong Li, Mengxi Xiao, Zihao Jiang, Ruoyu Xiang, Xiao Zhang, Zhengyu Chen, Yueru He, Weiguang Han, Yuzhe Yang, Shunian Chen, Yifei Zhang, Lihang Shen, Daniel S. Kim, Zhiwei Liu, Zheheng Luo, Yangyang Yu, Yupeng Cao, Zhiyang Deng, Zhiyuan Yao, Haohang Li, Duanyu Feng, Yongfu Dai, VijayaSai Somasundaram, Peng Lu, Yilun Zhao, Yitao Long, Guojun Xiong, Kaleb E. Smith, Honghai Yu, Yanzhao Lai, Min Peng, Jianyun Nie, Jordan W. Suchow, Xiao-Yang Liu, Benyou Wang, Alejandro Lopez-Lira, Jimin Huang, Sophia Ananiadou
2024	—	`ed.`	Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2024, Bangkok, Thailand, August 16, 2024 BioNLP@ACL Dina Demner-Fushman, Sophia Ananiadou, Makoto Miwa, Kirk Roberts, Junichi Tsujii
2024	J	`jnl`	RAEmoLLM: Retrieval Augmented LLMs for Cross-Domain Misinformation Detection Using In-Context Learning based on Emotional Information. CoRR Zhiwei Liu, Kailai Yang, Qianqian Xie, Christine de Kock, Sophia Ananiadou, Eduard H. Hovy
2024	J	`jnl`	Selective Preference Optimization via Token-Level Reward Function Estimation. CoRR Kailai Yang, Zhiwei Liu, Qianqian Xie, Jimin Huang, Erxue Min, Sophia Ananiadou
2024	J	`jnl`	Simple is not Enough: Document-level Text Simplification using Readability and Coherence. CoRR Laura Vásquez-Rodríguez, Nhung T. H. Nguyen, Piotr Przybyla, Matthew Shardlow, Sophia Ananiadou
2024	A*	`conf`	SuicidEmoji: Derived Emoji Dataset and Tasks for Suicide-Related Social Content. SIGIR Tianlin Zhang, Kailai Yang, Shaoxiong Ji, Boyang Liu, Qianqian Xie, Sophia Ananiadou
2024	J	`jnl`	Temporal relation extraction with contrastive prototypical sampling. Knowl. Based Syst. Chenhan Yuan, Qianqian Xie, Sophia Ananiadou
2024	J	`jnl`	The FinBen: An Holistic Financial Benchmark for Large Language Models. CoRR Qianqian Xie, Weiguang Han, Zhengyu Chen, Ruoyu Xiang, Xiao Zhang, Yueru He, Mengxi Xiao, Dong Li, Yongfu Dai, Duanyu Feng, Yijing Xu, Haoqiang Kang, Ziyan Kuang, Chenhan Yuan, Kailai Yang, Zheheng Luo, Tianlin Zhang, Zhiwei Liu, Guojun Xiong, Zhiyang Deng, Yuechen Jiang, Zhiyuan Yao, Haohang Li, Yangyang Yu, Gang Hu, Jiajia Huang, Xiao-Yang Liu, Alejandro Lopez-Lira, Benyou Wang, Yanzhao Lai, Hao Wang, Min Peng, Sophia Ananiadou, Jimin Huang
2024	J	`jnl`	The Lay Person's Guide to Biomedicine: Orchestrating Large Language Models. CoRR Zheheng Luo, Qianqian Xie, Sophia Ananiadou
2024	J	`jnl`	Understanding Multimodal LLMs: the Mechanistic Interpretability of Llava in Visual Question Answering. CoRR Zeping Yu, Sophia Ananiadou
2023	A	`conf`	A Bipartite Graph is All We Need for Enhancing Emotional Reasoning with Commonsense Knowledge. CIKM Kailai Yang, Tianlin Zhang, Shaoxiong Ji, Sophia Ananiadou
2023	J	`jnl`	A Bipartite Graph is All We Need for Enhancing Emotional Reasoning with Commonsense Knowledge. CoRR Kailai Yang, Tianlin Zhang, Shaoxiong Ji, Sophia Ananiadou
2023	J	`jnl`	A Novel Automated Approach to Mutation-Cancer Relation Extraction by Incorporating Heterogeneous Knowledge. IEEE J. Biomed. Health Informatics Jiarun Cao, Elke M. van Veen, Niels Peek, Andrew G. Renehan, Sophia Ananiadou
2023	J	`jnl`	A Survey on Biomedical Text Summarization with Pre-trained Language Model. CoRR Qianqian Xie, Zheheng Luo, Benyou Wang, Sophia Ananiadou
2023	—	`conf`	Argument mining as a multi-hop generative machine reading comprehension task. EMNLP (Findings) Boyang Liu, Viktor Schlegel, Riza Batista-Navarro, Sophia Ananiadou
2023	J	`jnl`	Back to the Future: Towards Explainable Temporal Reasoning with Large Language Models. CoRR Chenhan Yuan, Qianqian Xie, Jimin Huang, Sophia Ananiadou
2023	—	`conf`	BioLaySumm 2023 Shared Task: Lay Summarisation of Biomedical Research Articles. BioNLP@ACL Tomas Goldsack, Zheheng Luo, Qianqian Xie, Carolina Scarton, Matthew Shardlow, Sophia Ananiadou, Chenghua Lin
2023	J	`jnl`	ChatGPT as a Factual Inconsistency Evaluator for Abstractive Text Summarization. CoRR Zheheng Luo, Qianqian Xie, Sophia Ananiadou
2023	A*	`conf`	CitationSum: Citation-aware Graph Contrastive Learning for Scientific Paper Summarization. WWW Zheheng Luo, Qianqian Xie, Sophia Ananiadou
2023	J	`jnl`	CitationSum: Citation-aware Graph Contrastive Learning for Scientific Paper Summarization. CoRR Zheheng Luo, Qianqian Xie, Sophia Ananiadou
2023	J	`jnl`	Classifying Suicide-Related Content and Emotions on Twitter Using Graph Convolutional Neural Networks. IEEE Trans. Affect. Comput. Annika Marie Schoene, Lana Bojanic, Minh-Quoc Nghiem, Isabelle M. Hunt, Sophia Ananiadou
2023	J	`jnl`	Cluster-Level Contrastive Learning for Emotion Recognition in Conversations. CoRR Kailai Yang, Tianlin Zhang, Hassan Alhuzali, Sophia Ananiadou
2023	J	`jnl`	Cluster-Level Contrastive Learning for Emotion Recognition in Conversations. IEEE Trans. Affect. Comput. Kailai Yang, Tianlin Zhang, Hassan Alhuzali, Sophia Ananiadou
2023	J	`jnl`	Contextualized medication event extraction with levitated markers. J. Biomed. Informatics Jake Vasilakes, Panagiotis Georgiadis, Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou
2023	—	`conf`	DISTANT: Distantly Supervised Entity Span Detection and Classification. BioNLP@ACL Ken Yano, Makoto Miwa, Sophia Ananiadou
2023	J	`jnl`	Disentangled Variational Autoencoder for Emotion Recognition in Conversations. CoRR Kailai Yang, Tianlin Zhang, Sophia Ananiadou
2023	J	`jnl`	Domain-specific Continued Pretraining of Language Models for Capturing Long Context in Mental Health. CoRR Shaoxiong Ji, Tianlin Zhang, Kailai Yang, Sophia Ananiadou, Erik Cambria, Jörg Tiedemann
2023	J	`jnl`	Emotion Detection for Misinformation: A Review. CoRR Zhiwei Liu, Tianlin Zhang, Kailai Yang, Paul Thompson, Zeping Yu, Sophia Ananiadou
2023	J	`jnl`	Emotion fusion for mental illness detection from social media: A survey. CoRR Tianlin Zhang, Kailai Yang, Shaoxiong Ji, Sophia Ananiadou
2023	J	`jnl`	Emotion fusion for mental illness detection from social media: A survey. Inf. Fusion Tianlin Zhang, Kailai Yang, Shaoxiong Ji, Sophia Ananiadou
2023	J	`jnl`	Exploring the Residual Stream of Transformers. CoRR Zeping Yu, Kailai Yang, Zhiwei Liu, Sophia Ananiadou
2023	—	`conf`	Gaussian Distributed Prototypical Network for Few-shot Genomic Variant Detection. BioNLP@ACL Jiarun Cao, Niels Peek, Andrew G. Renehan, Sophia Ananiadou
2023	J	`jnl`	Global information-aware argument mining based on a top-down multi-turn QA model. Inf. Process. Manag. Boyang Liu, Viktor Schlegel, Paul Thompson, Riza Theresa Batista-Navarro, Sophia Ananiadou
2023	J	`jnl`	Graph Contrastive Topic Model. CoRR Zheheng Luo, Lei Liu, Qianqian Xie, Sophia Ananiadou
2023	J	`jnl`	Improving Textual Emotion Recognition Based on Intra- and Inter-Class Variations. IEEE Trans. Affect. Comput. Hassan Alhuzali, Sophia Ananiadou
2023	J	`jnl`	LongDocFACTScore: Evaluating the Factuality of Long Document Abstractive Summarisation. CoRR Jennifer Bishop, Qianqian Xie, Sophia Ananiadou
2023	J	`jnl`	MentalLLaMA: Interpretable Mental Health Analysis on Social Media with Large Language Models. CoRR Kailai Yang, Tianlin Zhang, Ziyan Kuang, Qianqian Xie, Sophia Ananiadou
2023	J	`jnl`	On the Evaluations of ChatGPT and Emotion-enhanced Prompting for Mental Health Analysis. CoRR Kailai Yang, Shaoxiong Ji, Tianlin Zhang, Qianqian Xie, Sophia Ananiadou
2023	J	`jnl`	Overview of the BioLaySumm 2023 Shared Task on Lay Summarization of Biomedical Research Articles. CoRR Tomas Goldsack, Zheheng Luo, Qianqian Xie, Carolina Scarton, Matthew Shardlow, Sophia Ananiadou, Chenghua Lin
2023	—	`conf`	PESTO: A Post-User Fusion Network for Rumour Detection on Social Media. WASSA@ACL Erxue Min, Sophia Ananiadou
2023	J	`jnl`	PHQ-aware depressive symptoms identification with similarity contrastive learning on social media. Inf. Process. Manag. Tianlin Zhang, Kailai Yang, Hassan Alhuzali, Boyang Liu, Sophia Ananiadou
2023	J	`jnl`	Rethinking Large Language Models in Mental Health Applications. CoRR Shaoxiong Ji, Tianlin Zhang, Kailai Yang, Sophia Ananiadou, Erik Cambria
2023	—	`conf`	Sentiment-guided Transformer with Severity-aware Contrastive Learning for Depression Detection on Social Media. BioNLP@ACL Tianlin Zhang, Kailai Yang, Sophia Ananiadou
2023	A	`conf`	Span-based Named Entity Recognition by Generating and Compressing Information. EACL Nhung Nguyen, Makoto Miwa, Sophia Ananiadou
2023	J	`jnl`	Span-based Named Entity Recognition by Generating and Compressing Information. CoRR Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou
2023	—	`ed.`	The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023. BioNLP@ACL Dina Demner-Fushman, Sophia Ananiadou, Kevin Cohen
2023	A*	`conf`	Towards Interpretable Mental Health Analysis with Large Language Models. EMNLP Kailai Yang, Shaoxiong Ji, Tianlin Zhang, Qianqian Xie, Ziyan Kuang, Sophia Ananiadou
2023	—	`conf`	Zero-shot Temporal Relation Extraction with ChatGPT. BioNLP@ACL Chenhan Yuan, Qianqian Xie, Sophia Ananiadou
2023	J	`jnl`	Zero-shot Temporal Relation Extraction with ChatGPT. CoRR Chenhan Yuan, Qianqian Xie, Sophia Ananiadou
2022	J	`jnl`	A mental state Knowledge-aware and Contrastive Network for early stress and depression detection on social media. Inf. Process. Manag. Kailai Yang, Tianlin Zhang, Sophia Ananiadou
2022	J	`jnl`	BioVAE: a pre-trained latent variable language model for biomedical text mining. Bioinform. Hai-Long Trieu, Makoto Miwa, Sophia Ananiadou
2022	J	`jnl`	Comparing neural models for nested and overlapping biomedical event detection. BMC Bioinform. Kurt J. P. Espinosa, Panagiotis Georgiadis, Fenia Christopoulou, Meizhi Ju, Makoto Miwa, Sophia Ananiadou
2022	A*	`conf`	Divide-and-Conquer: Post-User Interaction Network for Fake News Detection on Social Media. WWW Erxue Min, Yu Rong, Yatao Bian, Tingyang Xu, Peilin Zhao, Junzhou Huang, Sophia Ananiadou
2022	B	`conf`	Emotion-aware and Intent-controlled Empathetic Response Generation using Hierarchical Transformer Network. IJCNN Tulika Saha, Sophia Ananiadou
2022	J	`jnl`	Examining and mitigating gender bias in text emotion detection task. Neurocomputing Odbal, Guanhong Zhang, Sophia Ananiadou
2022	B	`conf`	GRETEL: Graph Contrastive Topic Enhanced Language Model for Long Document Extractive Summarization. COLING Qianqian Xie, Jimin Huang, Tulika Saha, Sophia Ananiadou
2022	J	`jnl`	GRETEL: Graph Contrastive Topic Enhanced Language Model for Long Document Extractive Summarization. CoRR Qianqian Xie, Jimin Huang, Tulika Saha, Sophia Ananiadou
2022	—	`conf`	GenCompareSum: a hybrid unsupervised summarization method using salience. BioNLP@ACL Jennifer Bishop, Qianqian Xie, Sophia Ananiadou
2022	B	`conf`	Incorporating Zoning Information into Argument Mining from Biomedical Literature. LREC Boyang Liu, Viktor Schlegel, Riza Batista-Navarro, Sophia Ananiadou
2022	—	`conf`	Knowledge Graph Enrichment of a Semantic Search System for Construction Safety. IntelliSys (3) Emrah Inan, Paul Thompson, Fenia Christopoulou, Tim Yates, Sophia Ananiadou
2022	—	`conf`	Learning Disentangled Representations of Negation and Uncertainty. ACL (1) Jake Vasilakes, Chrysoula Zerva, Makoto Miwa, Sophia Ananiadou
2022	J	`jnl`	Learning Disentangled Representations of Negation and Uncertainty. CoRR Jake Vasilakes, Chrysoula Zerva, Makoto Miwa, Sophia Ananiadou
2022	J	`jnl`	Masked Transformer for Neighhourhood-aware Click-Through Rate Prediction. CoRR Erxue Min, Yu Rong, Tingyang Xu, Yatao Bian, Peilin Zhao, Junzhou Huang, Da Luo, Kangyi Lin, Sophia Ananiadou
2022	—	`conf`	Named Entity Recognition for Cancer Immunology Research Using Distant Supervision. BioNLP@ACL Hai-Long Trieu, Makoto Miwa, Sophia Ananiadou
2022	J	`jnl`	Natural language processing applied to mental illness detection: a narrative review. npj Digit. Medicine Tianlin Zhang, Annika Marie Schoene, Shaoxiong Ji, Sophia Ananiadou
2022	A*	`conf`	Neighbour Interaction based Click-Through Rate Prediction via Graph-masked Transformer. SIGIR Erxue Min, Yu Rong, Tingyang Xu, Yatao Bian, Da Luo, Kangyi Lin, Junzhou Huang, Sophia Ananiadou, Peilin Zhao
2022	J	`jnl`	Neural architectures for aggregating sequence labels from multiple annotators. Neurocomputing Maolin Li, Sophia Ananiadou
2022	J	`jnl`	Pre-trained language models with domain knowledge for biomedical extractive summarization. Knowl. Based Syst. Qianqian Xie, Jennifer Bishop, Prayag Tiwari, Sophia Ananiadou
2022	—	`ed.`	Proceedings of the 21st Workshop on Biomedical Language Processing, BioNLP@ACL 2022, Dublin, Ireland, May 26, 2022 BioNLP@ACL Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2022	B	`conf`	RELATE: Generating a linguistically inspired Knowledge Graph for fine-grained emotion classification. LREC Annika Marie Schoene, Nina Dethlefs, Sophia Ananiadou
2022	—	`conf`	Readability Controllable Biomedical Document Summarization. EMNLP (Findings) Zheheng Luo, Qianqian Xie, Sophia Ananiadou
2022	J	`jnl`	Readability Controllable Biomedical Document Summarization. CoRR Zheheng Luo, Qianqian Xie, Sophia Ananiadou
2022	B	`conf`	Text Classification and Prediction in the Legal Domain. LREC Minh-Quoc Nghiem, Paul Baylis, André Freitas, Sophia Ananiadou
2022	J	`jnl`	Transformer for Graphs: An Overview from Architecture Perspective. CoRR Erxue Min, Runfa Chen, Yatao Bian, Tingyang Xu, Kangfei Zhao, Wenbing Huang, Peilin Zhao, Junzhou Huang, Sophia Ananiadou, Yu Rong
2021	—	`conf`	Distantly Supervised Relation Extraction with Sentence Reconstruction and Knowledge Base Priors. NAACL-HLT Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
2021	J	`jnl`	Distantly Supervised Relation Extraction with Sentence Reconstruction and Knowledge Base Priors. CoRR Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
2021	J	`jnl`	EPICURE Ensemble Pretrained Models for Extracting Cancer Mutations from Literature. CoRR Jiarun Cao, Elke M. van Veen, Niels Peek, Andrew G. Renehan, Sophia Ananiadou
2021	B	`conf`	EPICURE: Ensemble Pretrained Models for Extracting Cancer Mutations from Literature. CBMS Jiarun Cao, Elke M. van Veen, Niels Peek, Andrew G. Renehan, Sophia Ananiadou
2021	—	`conf`	GenerativeRE: Incorporating a Novel Copy Mechanism and Pretrained Model for Joint Entity and Relation Extraction. EMNLP (Findings) Jiarun Cao, Sophia Ananiadou
2021	—	`conf`	HSEarch: Semantic Search System for Workplace Accident Reports. ECIR (2) Emrah Inan, Paul Thompson, Tim Yates, Sophia Ananiadou
2021	J	`jnl`	HSEarch: semantic search system for workplace accident reports. CoRR Emrah Inan, Paul Thompson, Tim Yates, Sophia Ananiadou
2021	—	`conf`	Investigating Text Simplification Evaluation. ACL/IJCNLP (Findings) Laura Vásquez-Rodríguez, Matthew Shardlow, Piotr Przybyla, Sophia Ananiadou
2021	J	`jnl`	Investigating Text Simplification Evaluation. CoRR Laura Vásquez-Rodríguez, Matthew Shardlow, Piotr Przybyla, Sophia Ananiadou
2021	—	`conf`	One-shot to Weakly-Supervised Relation Classification using Language Models. AKBC Thy Thy Tran, Phong Le, Sophia Ananiadou
2021	—	`conf`	Paladin: an annotation tool based on active and proactive learning. EACL (System Demonstrations) Minh-Quoc Nghiem, Paul Baylis, Sophia Ananiadou
2021	—	`conf`	Predicting Sign of Depression via Using Frozen Pre-trained Models and Random Forest Classifier. CLEF (Working Notes) Hassan Alhuzali, Tianlin Zhang, Sophia Ananiadou
2021	—	`ed.`	Proceedings of the 20th Workshop on Biomedical Language Processing, BioNLP@NAACL-HLT 2021, Online, June 11, 2021 BioNLP@NAACL-HLT Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2021	A	`conf`	SpanEmo: Casting Multi-label Emotion Classification as Span-prediction. EACL Hassan Alhuzali, Sophia Ananiadou
2021	J	`jnl`	SpanEmo: Casting Multi-label Emotion Classification as Span-prediction. CoRR Hassan Alhuzali, Sophia Ananiadou
2021	—	`conf`	The Role of Text Simplification Operations in Evaluation. CTTS@SEPLN Laura Vásquez-Rodríguez, Matthew Shardlow, Piotr Przybyla, Sophia Ananiadou
2020	B	`conf`	A Neural Model for Aggregating Coreference Annotation in Crowdsourcing. COLING Maolin Li, Hiroya Takamura, Sophia Ananiadou
2020	J	`jnl`	Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods. J. Am. Medical Informatics Assoc. Fenia Christopoulou, Thy Thy Tran, Sunil Kumar Sahu, Makoto Miwa, Sophia Ananiadou
2020	J	`jnl`	An ensemble of neural models for nested adverse drug events and medication extraction with subwords. J. Am. Medical Informatics Assoc. Meizhi Ju, Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou
2020	J	`jnl`	Cited text span identification for scientific summarisation using pre-trained encoders. Scientometrics Chrysoula Zerva, Minh-Quoc Nghiem, Nhung T. H. Nguyen, Sophia Ananiadou
2020	J	`jnl`	DeepEventMine: end-to-end neural nested event extraction from biomedical texts. Bioinform. Hai-Long Trieu, Thy Thy Tran, Anh-Khoa Duong Nguyen, Anh Nguyen, Makoto Miwa, Sophia Ananiadou
2020	—	`ed.`	Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, BioNLP 2020, Online, July 9, 2020 BioNLP Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2020	A*	`conf`	Revisiting Unsupervised Relation Extraction. ACL Thy Thy Tran, Phong Le, Sophia Ananiadou
2020	J	`jnl`	Revisiting Unsupervised Relation Extraction. CoRR Thy Thy Tran, Phong Le, Sophia Ananiadou
2020	B	`conf`	Semantic Annotation for Improved Safety in Construction Work. LREC Paul Thompson, Tim Yates, Emrah Inan, Sophia Ananiadou
2020	J	`jnl`	Syntactically-informed word representations from graph neural network. Neurocomputing Thy Thy Tran, Makoto Miwa, Sophia Ananiadou
2019	—	`conf`	A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection. EMNLP/IJCNLP (1) Kurt Junshean Espinosa, Makoto Miwa, Sophia Ananiadou
2019	J	`jnl`	A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection. CoRR Kurt Junshean Espinosa, Makoto Miwa, Sophia Ananiadou
2019	J	`jnl`	A Text Mining Pipeline Using Active and Deep Learning Aimed at Curating Information in Computational Neuroscience. Neuroinformatics Matthew Shardlow, Meizhi Ju, Maolin Li, Christian O'Reilly, Elisabetta Iavarone, John McNaught, Sophia Ananiadou
2019	J	`jnl`	A Walk-based Model on Entity Graphs for Relation Extraction. CoRR Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
2019	—	`conf`	Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs. EMNLP/IJCNLP (1) Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
2019	J	`jnl`	Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs. CoRR Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
2019	—	`conf`	Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering. BioNLP-OST@EMNLP-IJNCLP Hai-Long Trieu, Anh-Khoa Duong Nguyen, Nhung T. H. Nguyen, Makoto Miwa, Hiroya Takamura, Sophia Ananiadou
2019	—	`conf`	Improving classification of Adverse Drug Reactions through Using Sentiment Analysis and Transfer Learning. BioNLP@ACL Hassan Alhuzali, Sophia Ananiadou
2019	J	`jnl`	Improving clinical named entity recognition in Chinese using the graphical and phonetic feature. BMC Medical Informatics Decis. Mak. Yifei Wang, Sophia Ananiadou, Jun'ichi Tsujii
2019	J	`jnl`	Improving reference prioritisation with PICO recognition. BMC Medical Informatics Decis. Mak. Austin J. Brockmeier, Meizhi Ju, Piotr Przybyla, Sophia Ananiadou
2019	—	`conf`	Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network. ACL (1) Sunil Kumar Sahu, Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
2019	J	`jnl`	Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network. CoRR Sunil Kumar Sahu, Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
2019	J	`jnl`	Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries. BMC Bioinform. Yipei Wang, Xingyu Fan, Luoxin Chen, Eric I-Chao Chang, Sophia Ananiadou, Junichi Tsujii, Yan Xu
2019	—	`conf`	Modelling Instance-Level Annotator Reliability for Natural Language Labelling Tasks. NAACL-HLT (1) Maolin Li, Arvid Fahlström Myrman, Tingting Mu, Sophia Ananiadou
2019	J	`jnl`	Modelling Instance-Level Annotator Reliability for Natural Language Labelling Tasks. CoRR Maolin Li, Arvid Fahlström Myrman, Tingting Mu, Sophia Ananiadou
2019	—	`conf`	NaCTeM-UoM @ CL-SciSumm 2019. BIRNDL@SIGIR Chrysoula Zerva, Minh-Quoc Nghiem, Nhung T. H. Nguyen, Sophia Ananiadou
2019	—	`ed.`	Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL 2019, Florence, Italy, August 1, 2019. BioNLP@ACL Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2019	J	`jnl`	Quantifying risk factors in medical reports with a context-aware linear model. J. Am. Medical Informatics Assoc. Piotr Przybyla, Austin J. Brockmeier, Sophia Ananiadou
2019	J	`jnl`	Thalia: semantic search engine for biomedical abstracts. Bioinform. Axel J. Soto, Piotr Przybyla, Sophia Ananiadou
2018	—	`conf`	A Neural Layered Model for Nested Named Entity Recognition. NAACL-HLT Meizhi Ju, Makoto Miwa, Sophia Ananiadou
2018	B	`conf`	A New Corpus to Support Text Mining for the Curation of Metabolites in the ChEBI Database. LREC Matthew Shardlow, Nhung T. H. Nguyen, Gareth I. Owen, Claire O'Donovan, Andrew Leach, John McNaught, Steve Turner, Sophia Ananiadou
2018	—	`conf`	A Walk-based Model on Entity Graphs for Relation Extraction. ACL (2) Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
2018	—	`conf`	APLenty: annotation tool for creating high-quality datasets using active and proactive learning. EMNLP (Demonstration) Minh-Quoc Nghiem, Sophia Ananiadou
2018	J	`jnl`	Annotation and detection of drug effects in text for pharmacovigilance. J. Cheminformatics Paul Thompson, Sophia Daikou, Kenju Ueno, Riza Batista-Navarro, Jun'ichi Tsujii, Sophia Ananiadou
2018	J	`jnl`	Data Visualization with Structural Control of Global Cohort and Local Data Neighborhoods. IEEE Trans. Pattern Anal. Mach. Intell. Tingting Mu, John Yannis Goulermas, Sophia Ananiadou
2018	J	`jnl`	Identification of research hypotheses and new knowledge from scientific literature. BMC Medical Informatics Decis. Mak. Matthew Shardlow, Riza Batista-Navarro, Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou
2018	—	`conf`	Improve Chinese Clinical Named Entity Recognition Performance by Using the Graphical and Phonetic Feature. BIBM Yifei Wang, Sophia Ananiadou, Jun'ichi Tsujii
2018	—	`conf`	Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts. BioNLP Hai-Long Trieu, Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou
2018	J	`jnl`	LitPathExplorer: a confidence-based visual text analytics tool for exploring literature-enriched pathway models. Bioinform. Axel J. Soto, Chrysoula Zerva, Riza Batista-Navarro, Sophia Ananiadou
2018	—	`ed.`	Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018 BioNLP Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2018	J	`jnl`	Self-Tuned Descriptive Document Clustering Using a Predictive Network. IEEE Trans. Knowl. Data Eng. Austin J. Brockmeier, Tingting Mu, Sophia Ananiadou, John Yannis Goulermas
2017	J	`jnl`	A semi-supervised approach using label propagation to support citation screening. J. Biomed. Informatics Georgios Kontonatsios, Austin J. Brockmeier, Piotr Przybyla, John McNaught, Tingting Mu, John Yannis Goulermas, Sophia Ananiadou
2017	—	`ed.`	BioNLP 2017, Vancouver, Canada, August 4, 2017 BioNLP Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Junichi Tsujii
2017	—	`conf`	Distributed Document and Phrase Co-embeddings for Descriptive Clustering. EACL (1) Motoki Sato, Austin J. Brockmeier, Georgios Kontonatsios, Tingting Mu, John Yannis Goulermas, Jun'ichi Tsujii, Sophia Ananiadou
2017	J	`jnl`	Enriching news events with meta-knowledge information. Lang. Resour. Evaluation Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou
2017	—	`conf`	Extracting Gene-Disease Relations from Text to Support Biomarker Discovery. DH Paul Thompson, Sophia Ananiadou
2017	—	`conf`	Identifying Personalised Treatments and Clinical Trials for Precision Medicine using Semantic Search with Thalia. TREC Piotr Przybyla, Axel J. Soto, Sophia Ananiadou
2017	—	`conf`	Proactive Learning for Named Entity Recognition. BioNLP Maolin Li, Nhung T. H. Nguyen, Sophia Ananiadou
2017	J	`jnl`	Quantifying the Informativeness of Similarity Measurements. J. Mach. Learn. Res. Austin J. Brockmeier, Tingting Mu, Sophia Ananiadou, John Yannis Goulermas
2017	J	`jnl`	Using uncertainty to link and rank evidence from biomedical literature for model curation. Bioinform. Chrysoula Zerva, Riza Batista-Navarro, Philip Day, Sophia Ananiadou
2016	B	`conf`	A Text Mining Framework for Accelerating the Semantic Curation of Literature. TPDL Riza Theresa Batista-Navarro, Jennifer Hammock, William Ulate, Sophia Ananiadou
2016	—	`conf`	A Text Mining-Based Framework for Constructing an RDF-Compliant Biodiversity Knowledge Repository. SIMBig (Revised Selected Papers) Riza Batista-Navarro, Chrysoula Zerva, Nhung T. H. Nguyen, Sophia Ananiadou
2016	J	`jnl`	Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts. J. Biomed. Informatics Ioannis Korkontzelos, Azadeh Nikfarjam, Matthew Shardlow, Abeed Sarker, Sophia Ananiadou, Graciela Gonzalez-Hernandez
2016	J	`jnl`	Argo: enabling the development of bespoke workflows and services for disease annotation. Database J. Biol. Databases Curation Riza Theresa Batista-Navarro, Jacob Carter, Sophia Ananiadou
2016	J	`jnl`	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau
2016	—	`conf`	Construction of a Biodiversity Knowledge Repository using a Text Mining-based Framework. SIMBig Riza Batista-Navarro, Chrysoula Zerva, Sophia Ananiadou
2016	J	`jnl`	Descriptive document clustering via discriminant learning in a co-embedded space of multilevel similarities. J. Assoc. Inf. Sci. Technol. Tingting Mu, John Yannis Goulermas, Ioannis Korkontzelos, Sophia Ananiadou
2016	B	`conf`	Ensemble Classification of Grants using LDA-based Features. LREC Ioannis Korkontzelos, Beverley Thomas, Makoto Miwa, Sophia Ananiadou
2016	B	`conf`	Identifying Content Types of Messages Related to Open Source Software Projects. LREC Ioannis Korkontzelos, Paul Thompson, Sophia Ananiadou
2016	—	`conf`	Learning to recognise named entities in tweets by exploiting weakly labelled data. NUT@COLING Kurt Junshean Espinosa, Riza Theresa Batista-Navarro, Sophia Ananiadou
2016	—	`conf`	NaCTeM at SemEval-2016 Task 1: Inferring sentence-level semantic similarity from an ensemble of complementary lexical and sentence-level features. SemEval@NAACL-HLT Piotr Przybyla, Nhung T. H. Nguyen, Matthew Shardlow, Georgios Kontonatsios, Sophia Ananiadou
2016	J	`jnl`	Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
2016	—	`ed.`	Proceedings of the 15th Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2016, Berlin, Germany, August 12, 2016 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2016	—	`ed.`	Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, BioTxtM@COLING 2016, Osaka, Japan, December 12, 2016 BioTxtM@COLING 2016 Sophia Ananiadou, Riza Batista-Navarro, Kevin Bretonnel Cohen, Dina Demner-Fushman, Paul Thompson
2016	—	`conf`	Supporting Biological Pathway Curation Through Text Mining. DAMDID/RCDL (Selected Papers) Sophia Ananiadou, Paul Thompson
2016	—	`conf`	Text Mining Bridging the Gap between Knowledge and Text. DAMDID/RCDL Sophia Ananiadou
2016	J	`jnl`	Text mining resources for the life sciences. Database J. Biol. Databases Curation Piotr Przybyla, Matthew Shardlow, Sophie Aubin, Robert Bossy, Richard Eckart de Castilho, Stelios Piperidis, John McNaught, Sophia Ananiadou
2016	J	`jnl`	The strategic impact of META-NET on the regional, national and international level. Lang. Resour. Evaluation Georg Rehm, Hans Uszkoreit, Sophia Ananiadou, Núria Bel, Audroné Bieleviciené, Lars Borin, António Branco, Gerhard Budin, Nicoletta Calzolari, Walter Daelemans, Radovan Garabík, Marko Grobelnik, Carmen García-Mateo, Josef van Genabith, Jan Hajic, Inma Hernáez, John Judge, Svetla Koeva, Simon Krek, Cvetana Krstev, Krister Lindén, Bernardo Magnini, Joseph Mariani, John McNaught, Maite Melero, Monica Monachini, Asunción Moreno, Jan Odijk, Maciej Ogrodniczuk, Piotr Pezik, Stelios Piperidis, Adam Przepiórkowski, Eiríkur Rögnvaldsson, Mike Rosner, Bolette Sandford Pedersen, Inguna Skadina, Koenraad De Smedt, Marko Tadic, Paul Thompson, Dan Tufis, Tamás Váradi, Andrejs Vasiljevs, Kadri Vider, Jolanta Zabarskaite
2016	J	`jnl`	Topic detection using paragraph vectors to support active learning in systematic reviews. J. Biomed. Informatics Kazuma Hashimoto, Georgios Kontonatsios, Makoto Miwa, Sophia Ananiadou
2015	J	`jnl`	Adaptable, high recall, event extraction system with minimal configuration. BMC Bioinform. Makoto Miwa, Sophia Ananiadou
2015	—	`conf`	Assessing the Use of Eclipse MDE Technologies in Open-Source Software Projects. OSS4MDE@MoDELS Dimitrios S. Kolovos, Nicholas Drivalos Matragkas, Ioannis Korkontzelos, Sophia Ananiadou, Richard F. Paige
2015	J	`jnl`	Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary. BMC Bioinform. Yan Xu, Luoxin Chen, Junsheng Wei, Sophia Ananiadou, Yubo Fan, Yi Qian, Eric I-Chao Chang, Jun'ichi Tsujii
2015	J	`jnl`	Boosting drug named entity recognition using an aggregate classifier. Artif. Intell. Medicine Ioannis Korkontzelos, Dimitrios Piliouras, Andrew W. Dowsey, Sophia Ananiadou
2015	—	`conf`	Customised OCR correction for historical medical text. DigitalHERITAGE (1) Paul Thompson, John McNaught, Sophia Ananiadou
2015	—	`conf`	Event Extraction in pieces: Tackling the partial event identification problem on unseen corpora. BioNLP@IJCNLP Chrysoula Zerva, Sophia Ananiadou
2015	—	`ch.`	Mining the Biomedical Literature. Healthcare Data Analytics Claudiu Mihaila, Riza Theresa Batista-Navarro, Noha Alnazzawi, Georgios Kontonatsios, Ioannis Korkontzelos, Rafal Rak, Paul Thompson, Sophia Ananiadou
2015	—	`conf`	OSSMETER: Automated Measurement and Analysis of Open Source Software. STAF Projects Showcase Bruno Almeida, Sophia Ananiadou, Alessandra Bagnato, Alberto Berreteaga Barbero, Juri Di Rocco, Davide Di Ruscio, Dimitrios S. Kolovos, Ioannis Korkontzelos, Scott Hansen, Pedro Maló, Nikolaos Drivalos, Richard F. Paige, Jurgen J. Vinju
2015	J	`jnl`	Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics. J. Cheminformatics Riza Theresa Batista-Navarro, Rafal Rak, Sophia Ananiadou
2015	J	`jnl`	Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013. BMC Bioinform. Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Jun'ichi Tsujii, Sophia Ananiadou
2015	—	`ed.`	Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015 BioNLP@IJCNLP Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2015	—	`conf`	Semantically enhanced search system for historical medical archives. Digital Heritage Paul Thompson, Jacob Carter, John McNaught, Sophia Ananiadou
2015	J	`jnl`	Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows. J. Biomed. Semant. Xiao Fu, Riza Theresa Batista-Navarro, Rafal Rak, Sophia Ananiadou
2015	J	`jnl`	Using text mining techniques to extract phenotypic information from the PhenoCHF corpus. BMC Medical Informatics Decis. Mak. Noha Alnazzawi, Paul Thompson, Riza Theresa Batista-Navarro, Sophia Ananiadou
2014	—	`conf`	A Hybrid Approach to Compiling Bilingual Dictionaries of Medical Terms from Parallel Corpora. SLSP Georgios Kontonatsios, Claudiu Mihaila, Ioannis Korkontzelos, Paul Thompson, Sophia Ananiadou
2014	J	`jnl`	Anatomical entity mention recognition at literature scale. Bioinform. Sampo Pyysalo, Sophia Ananiadou
2014	—	`conf`	Building a semantically annotated corpus for congestive heart and renal failure from clinical records and the literature. Louhi@EACL Noha Alnazzawi, Paul Thompson, Sophia Ananiadou
2014	A*	`conf`	Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora. EMNLP Georgios Kontonatsios, Ioannis Korkontzelos, Jun'ichi Tsujii, Sophia Ananiadou
2014	B	`conf`	Comparable Study of Event Extraction in Newswire and Biomedical Domains. COLING Makoto Miwa, Paul Thompson, Ioannis Korkontzelos, Sophia Ananiadou
2014	J	`jnl`	Discovering robust Embeddings in (DIS)Similarity Space for High-Dimensional Linguistic Features. Comput. Intell. Tingting Mu, Makoto Miwa, Junichi Tsujii, Sophia Ananiadou
2014	J	`jnl`	Generalising semantic category disambiguation with large lexical resources for fun and profit. J. Biomed. Semant. Pontus Stenetorp, Sampo Pyysalo, Sophia Ananiadou, Jun'ichi Tsujii
2014	B	`conf`	Interoperability and Customisation of Annotation Schemata in Argo. LREC Rafal Rak, Jacob Carter, Andrew Rowley, Riza Theresa Batista-Navarro, Sophia Ananiadou
2014	—	`conf`	Keynote: Supporting evidence-based medicine using text mining. Louhi@EACL Sophia Ananiadou
2014	B	`conf`	Locating Requests among Open Source Software Communication Messages. LREC Ioannis Korkontzelos, Sophia Ananiadou
2014	—	`ed.`	Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014, June 27-28, 2014 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2014	J	`jnl`	Processing biological literature with customizable Web services supporting interoperable formats. Database J. Biol. Databases Curation Rafal Rak, Riza Theresa Batista-Navarro, Jacob Carter, Andrew Rowley, Sophia Ananiadou
2014	J	`jnl`	Reducing systematic review workload through certainty-based screening. J. Biomed. Informatics Makoto Miwa, James Thomas, Alison O'Mara-Eves, Sophia Ananiadou
2014	J	`jnl`	Text-mining-assisted biocuration workflows in Argo. Database J. Biol. Databases Curation Rafal Rak, Riza Theresa Batista-Navarro, Andrew Rowley, Jacob Carter, Sophia Ananiadou
2014	B	`conf`	The Meta-knowledge of Causality in Biomedical Scientific Discourse. LREC Claudiu Mihaila, Sophia Ananiadou
2014	B	`conf`	The Strategic Impact of META-NET on the Regional, National and International Level. LREC Georg Rehm, Hans Uszkoreit, Sophia Ananiadou, Núria Bel, Audroné Bieleviciené, Lars Borin, António Branco, Gerhard Budin, Nicoletta Calzolari, Walter Daelemans, Radovan Garabík, Marko Grobelnik, Carmen García-Mateo, Josef van Genabith, Jan Hajic, Inma Hernáez, John Judge, Svetla Koeva, Simon Krek, Cvetana Krstev, Krister Lindén, Bernardo Magnini, Joseph Mariani, John McNaught, Maite Melero, Monica Monachini, Asunción Moreno, Jan Odijk, Maciej Ogrodniczuk, Piotr Pezik, Stelios Piperidis, Adam Przepiórkowski, Eiríkur Rögnvaldsson, Michael Rosner, Bolette S. Pedersen, Inguna Skadina, Koenraad De Smedt, Marko Tadic, Paul Thompson, Dan Tufis, Tamás Váradi, Andrejs Vasiljevs, Kadri Vider, Jolanta Zabarskaite
2014	A	`conf`	Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora. EACL Georgios Kontonatsios, Ioannis Korkontzelos, Jun'ichi Tsujii, Sophia Ananiadou
2013	J	`jnl`	"Mining events from the literature for bioinformatics applications" by S. Ananiadou, P. Thompson, and R. Nawaz; with Martin Vesely as coordinator. SIGWEB Newsl. Sophia Ananiadou, Paul Thompson, Raheel Nawaz
2013	—	`conf`	A hybrid approach to recognising discourse causality in the biomedical domain. BIBM Claudiu Mihaila, Sophia Ananiadou
2013	J	`jnl`	A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data. BMC Medical Informatics Decis. Mak. Angelo C. Restificar, Ioannis Korkontzelos, Sophia Ananiadou
2013	J	`jnl`	A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text. Bioinform. Makoto Miwa, Tomoko Ohta, Rafal Rak, Andrew Rowley, Douglas B. Kell, Sampo Pyysalo, Sophia Ananiadou
2013	J	`jnl`	BioCause: Annotating and analysing causality in the biomedical domain. BMC Bioinform. Claudiu Mihaila, Tomoko Ohta, Sampo Pyysalo, Sophia Ananiadou
2013	—	`conf`	Dealing with Data Sparsity in Drug Named Entity Recognition. ICHI Dimitrios Piliouras, Ioannis Korkontzelos, Andrew W. Dowsey, Sophia Ananiadou
2013	J	`jnl`	Deploying and sharing U-Compare workflows as web services. J. Biomed. Semant. Georgios Kontonatsios, Ioannis Korkontzelos, BalaKrishna Kolluru, Paul Thompson, Sophia Ananiadou
2013	—	`conf`	Development and Analysis of NLP Pipelines in Argo. ACL (Conference System Demonstrations) Rafal Rak, Andrew Rowley, Jacob Carter, Sophia Ananiadou
2013	—	`conf`	Enhancing Search: Events and Their Discourse Context. CICLing (2) Sophia Ananiadou, Paul Thompson, Raheel Nawaz
2013	—	`conf`	Extending an interoperable platform to facilitate the creation of multilingual and multimodal NLP applications. ACL (Conference System Demonstrations) Georgios Kontonatsios, Paul Thompson, Riza Theresa Batista-Navarro, Claudiu Mihaila, Ioannis Korkontzelos, Sophia Ananiadou
2013	—	`conf`	Facilitating the Analysis of Discourse Phenomena in an Interoperable NLP Platform. CICLing (1) Riza Theresa Batista-Navarro, Georgios Kontonatsios, Claudiu Mihaila, Paul Thompson, Rafal Rak, Raheel Nawaz, Ioannis Korkontzelos, Sophia Ananiadou
2013	—	`conf`	Making UIMA Truly Interoperable with SPARQL. LAW@ACL Rafal Rak, Sophia Ananiadou
2013	—	`conf`	NaCTeM EventMine for BioNLP 2013 CG and PC tasks. BioNLP@ACL (Shared Task) Makoto Miwa, Sophia Ananiadou
2013	J	`jnl`	Negated bio-events: analysis and identification. BMC Bioinform. Raheel Nawaz, Paul Thompson, Sophia Ananiadou
2013	—	`conf`	News search using discourse analytics. Digital Heritage (1) Paul Thompson, Raheel Nawaz, Ioannis Korkontzelos, William J. Black, John McNaught, Sophia Ananiadou
2013	—	`conf`	Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013. BioNLP@ACL (Shared Task) Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou
2013	—	`conf`	Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013. BioNLP@ACL (Shared Task) Tomoko Ohta, Sampo Pyysalo, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Sophia Ananiadou, Jun'ichi Tsujii
2013	—	`ed.`	Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2013, Sofia, Bulgaria, August 8, 2013 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Junichi Tsujii
2013	J	`jnl`	Préface. Trait. Autom. des Langues Sophia Ananiadou, Nathalie Friburger, Sophie Rosset
2013	J	`jnl`	Recognising Discourse Causality Triggers in the Biomedical Domain. J. Bioinform. Comput. Biol. Claudiu Mihaila, Sophia Ananiadou
2013	J	`jnl`	Smart Health and Wellbeing. ACM Trans. Manag. Inf. Syst. Christopher C. Yang, Gondy Leroy, Sophia Ananiadou
2013	J	`jnl`	Something Old, Something New: Identifying Knowledge Source in Bio-events. Int. J. Comput. Linguistics Appl. Raheel Nawaz, Paul Thompson, Sophia Ananiadou
2013	J	`jnl`	Towards Event-based Discourse Analysis of Biomedical Text. Int. J. Comput. Linguistics Appl. Raheel Nawaz, Paul Thompson, Sophia Ananiadou
2013	—	`conf`	Towards a Better Understanding of Discourse: Integrating Multiple Discourse Annotation Perspectives Using UIMA. LAW@ACL Claudiu Mihaila, Georgios Kontonatsios, Riza Theresa Batista-Navarro, Paul Thompson, Ioannis Korkontzelos, Sophia Ananiadou
2013	—	`conf`	Using a Random Forest Classifier to recognise translations of biomedical terms across languages. BUCC@ACL Georgios Kontonatsios, Ioannis Korkontzelos, Sophia Ananiadou, Jun'ichi Tsujii
2013	—	`conf`	What causes a causal relation? Detecting Causal Triggers in Biomedical Scientific Discourse. ACL (Student Research Workshop) Claudiu Mihaila, Sophia Ananiadou
2013	J	`jnl`	Wide coverage biomedical event extraction using multiple partially overlapping corpora. BMC Bioinform. Makoto Miwa, Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou
2012	B	`conf`	A data and analysis resource for an experiment in text mining a collection of micro-blogs on a political topic. LREC William J. Black, Rob Procter, Steven Gray, Sophia Ananiadou
2012	J	`jnl`	ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials. BMC Medical Informatics Decis. Mak. Ioannis Korkontzelos, Tingting Mu, Sophia Ananiadou
2012	—	`conf`	ASCOT: assisting search and creation of clinical trials. IHI Ioannis Korkontzelos, Sophia Ananiadou
2012	J	`jnl`	Argo: an integrative, interactive, text mining-based workbench supporting curation. Database J. Biol. Databases Curation Rafal Rak, Andrew Rowley, William J. Black, Sophia Ananiadou
2012	B	`conf`	Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries. LREC Xinkai Wang, Paul Thompson, Jun'ichi Tsujii, Sophia Ananiadou
2012	—	`conf`	Biomedical text mining for semantic search and knowledge discovery. IHI Sophia Ananiadou
2012	J	`jnl`	Boosting automatic event extraction from the literature using domain adaptation and coreference resolution. Bioinform. Makoto Miwa, Paul Thompson, Sophia Ananiadou
2012	—	`conf`	Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far. ExProM@ACL Pontus Stenetorp, Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou, Jun'ichi Tsujii
2012	—	`conf`	Building Trainable Taggers in a Web-based, UIMA-Supported NLP Workbench. ACL (System Demonstrations) Rafal Rak, BalaKrishna Kolluru, Sophia Ananiadou
2012	B	`conf`	Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench. LREC Rafal Rak, Andrew Rowley, Sophia Ananiadou
2012	A	`conf`	DTMBIO 2012: international workshop on data and text mining in biomedical informatics. CIKM Min Song, Doheon Lee, Hua Xu, Sophia Ananiadou
2012	—	`conf`	Detecting and using document structure in scientific text. IHI Anita de Waard, Sophia Ananiadou, Maryann E. Martone, Ágnes Sándor, Hagit Shatkay
2012	C	`conf`	Developing Multilingual Text Mining Workflows in UIMA and U-Compare. NLDB Georgios Kontonatsios, Ioannis Korkontzelos, Sophia Ananiadou
2012	J	`jnl`	Event extraction across multiple levels of biological organization. Bioinform. Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Han-Cheol Cho, Junichi Tsujii, Sophia Ananiadou
2012	—	`conf`	Extracting Semantically Enriched Events from the Literature. KDIR Sophia Ananiadou
2012	J	`jnl`	Extracting semantically enriched events from biomedical literature. BMC Bioinform. Makoto Miwa, Paul Thompson, John McNaught, Douglas B. Kell, Sophia Ananiadou
2012	B	`conf`	Identification of Manner in Bio-Events. LREC Raheel Nawaz, Paul Thompson, Sophia Ananiadou
2012	—	`conf`	Inferring appropriate eligibility criteria in clinical trial protocols without labeled data. DTMBIO@CIKM Angelo C. Restificar, Sophia Ananiadou
2012	—	`conf`	New Resources and Perspectives for Biomedical Event Extraction. BioNLP@HLT-NAACL Sampo Pyysalo, Pontus Stenetorp, Tomoko Ohta, Jin-Dong Kim, Sophia Ananiadou
2012	J	`jnl`	Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. BMC Bioinform. Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
2012	—	`ed.`	Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012 BioNLP@HLT-NAACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Bonnie L. Webber, Jun'ichi Tsujii, John Pestian
2012	—	`ed.`	Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, DTMBIO@CIKM 2012, Maui, Hawaii, USA, October 29, 2012 DTMBIO@CIKM Doheon Kim, Sophia Ananiadou, Min Song, Hua Xu
2012	J	`jnl`	Proximity-Based Frameworks for Generating Embeddings from Multi-Output Data. IEEE Trans. Pattern Anal. Mach. Intell. Tingting Mu, John Yannis Goulermas, Jun'ichi Tsujii, Sophia Ananiadou
2012	—	`conf`	PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. BioNLP@HLT-NAACL Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski
2012	A	`conf`	brat: a Web-based Tool for NLP-Assisted Text Annotation. EACL Pontus Stenetorp, Sampo Pyysalo, Goran Topic, Tomoko Ohta, Sophia Ananiadou, Jun'ichi Tsujii
2011	J	`jnl`	AGRA: analysis of gene ranking algorithms. Bioinform. Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii
2011	—	`conf`	Adding text mining workflows as web services to the BioCatalogue. SWAT4LS Georgios Kontonatsios, Ioannis Korkontzelos, BalaKrishna Kolluru, Sophia Ananiadou
2011	J	`jnl`	Automatic extraction of angiogenesis bioprocess from text. Bioinform. Xinglong Wang, Iain McKendrick, Ian P. Barrett, Ian Dix, Tim French, Jun'ichi Tsujii, Sophia Ananiadou
2011	J	`jnl`	Automatic extraction of microorganisms and their habitats from free text using text mining workflows. J. Integr. Bioinform. BalaKrishna Kolluru, Sirintra Nakjang, Robert P. Hirt, Anil Wipat, Sophia Ananiadou
2011	—	`conf`	Building a Coreference-Annotated Corpus from the Domain of Biochemistry. BioNLP@ACL Riza Theresa Batista-Navarro, Sophia Ananiadou
2011	A	`conf`	DTMBIO 2011: international workshop on data and textmining in biomedical informatics. CIKM Sophia Ananiadou, Doheon Lee, Shamkant B. Navathe, Min Song
2011	J	`jnl`	Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature. BMC Bioinform. Xinglong Wang, Rafal Rak, Angelo C. Restificar, Chikashi Nobata, C. J. Rupp, Riza Theresa Batista-Navarro, Raheel Nawaz, Sophia Ananiadou
2011	J	`jnl`	Discovering and visualizing indirect associations between biomedical concepts. Bioinform. Yoshimasa Tsuruoka, Makoto Miwa, Kaisei Hamamoto, Jun'ichi Tsujii, Sophia Ananiadou
2011	J	`jnl`	Enriching a biomedical event corpus with meta-knowledge annotation. BMC Bioinform. Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou
2011	—	`conf`	Enrichment and Structuring of Archival Description Metadata. LaTeCH@ACL Kalliopi Zervanou, Ioannis Korkontzelos, Antal van den Bosch, Sophia Ananiadou
2011	—	`conf`	Extending a Tool Resource Framework with U-Compare. LTC Michael Rosner, Andrew Attard, Paul Thompson, Albert Gatt, Sophia Ananiadou
2011	J	`jnl`	Extracting Secondary Bio-Event Arguments with Extraction Constraints. Comput. Intell. Yutaka Sasaki, Xinglong Wang, Sophia Ananiadou
2011	—	`conf`	Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
2011	—	`conf`	Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications. ICCABS Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii
2011	—	`ed.`	Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2011	—	`conf`	Promoting Interoperability of Resources in META-SHARE. Workshop on Language Resources@IJCNLP Paul Thompson, Yoshinobu Kano, John McNaught, Steve Pettifer, Teresa K. Attwood, John A. Keane, Sophia Ananiadou
2011	J	`jnl`	The BioLexicon: a large-scale terminological resource for biomedical text mining. BMC Bioinform. Paul Thompson, John McNaught, Simonetta Montemagni, Nicoletta Calzolari, Riccardo Del Gratta, Vivian Lee, Simone Marchi, Monica Monachini, Piotr Pezik, Valeria Quochi, C. J. Rupp, Yutaka Sasaki, Giulia Venturi, Dietrich Rebholz-Schuhmann, Sophia Ananiadou
2011	J	`jnl`	U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2011	J	`jnl`	U-Compare: A modular NLP workflow construction and evaluation system. IBM J. Res. Dev. Yoshinobu Kano, Makoto Miwa, K. Bretonnel Cohen, Lawrence Hunter, Sophia Ananiadou, Jun'ichi Tsujii
2011	J	`jnl`	UKPMC: a full text article resource for the life sciences. Nucleic Acids Res. Johanna R. McEntyre, Sophia Ananiadou, Stephen Andrews, William J. Black, Richard Boulderstone, Paula Buttery, David Chaplin, Sandeepreddy Chevuru, Norman Cobley, Lee-Ann Coleman, Paul Davey, Bharti Gupta, Lesley Haji-Gholam, Craig Hawkins, Alan Horne, Simon J. Hubbard, Jee-Hyub Kim, Ian Lewin, Vic Lyte, Ross MacIntyre, Sami Mansoor, Linda Mason, John McNaught, Elizabeth Newbold, Chikashi Nobata, Ernest Ong, Sharmila Pillai, Dietrich Rebholz-Schuhmann, Heather Rosie, Rob Rowbotham, C. J. Rupp, Peter Stoehr, Philip Vaughan
2010	J	`jnl`	Building a high-quality sense inventory for improved abbreviation disambiguation. Bioinform. Naoaki Okazaki, Sophia Ananiadou, Jun'ichi Tsujii
2010	J	`jnl`	Disambiguating the species of biomedical named entities using natural language parsers. Bioinform. Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
2010	B	`conf`	Evaluating a Text Mining Based Educational Search Portal. LREC Sophia Ananiadou, John McNaught, James Thomas, Mark Rickinson, Sandy Oliver
2010	—	`conf`	Evaluating a meta-knowledge annotation scheme for bio-events. NeSp-NLP@ACL Raheel Nawaz, Paul Thompson, Sophia Ananiadou
2010	—	`conf`	Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation. COLING (Posters) Tingting Mu, Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
2010	B	`conf`	Meta-Knowledge Annotation of Bio-Events. LREC Raheel Nawaz, Paul Thompson, John McNaught, Sophia Ananiadou
2010	J	`jnl`	PathText: a text mining integrator for biological pathway visualizations. Bioinform. Brian Kemper, Takuya Matsuzaki, Yukiko Matsuoka, Yoshimasa Tsuruoka, Hiroaki Kitano, Sophia Ananiadou, Jun'ichi Tsujii
2010	—	`ed.`	Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010 BioNLP@ACL K. Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2010	—	`conf`	Proximity-based Graph Embeddings for Multi-label Classification. KDIR Tingting Mu, Sophia Ananiadou
2010	J	`jnl`	Text mining meets workflow: linking U-Compare with Taverna. Bioinform. Yoshinobu Kano, Paul D. Dobson, Mio Nakanishi, Jun'ichi Tsujii, Sophia Ananiadou
2010	J	`jnl`	The Value of an in-Domain Lexicon in genomics QA. J. Bioinform. Comput. Biol. Yutaka Sasaki, John McNaught, Sophia Ananiadou
2010	—	`conf`	Towards Event Extraction from Full Texts on Infectious Diseases. BioNLP@ACL Sampo Pyysalo, Tomoko Ohta, Han-Cheol Cho, Daniel E. Sullivan, Chunhong Mao, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
2010	B	`conf`	U-Compare: An Integrated Language Resource Evaluation Platform Including a Comprehensive UIMA Resource Library. LREC Yoshinobu Kano, Rubén Dorado, Luke McCrohon, Sophia Ananiadou, Jun'ichi Tsujii
2009	—	`conf`	ASSIST : un moteur de recherche spécialisé pour l'analyse des cadres d'expériences. TALN (Demonstrations) Davy Weissenbacher, Elisa Pieri, Sophia Ananiadou, Brian Rea, Farida Vis, Yuwei Lin, Rob Procter, Peter Halfpenny
2009	C	`conf`	An Improved Automatic Term Recognition Method for Spanish. CICLing Alberto Barrón-Cedeño, Gerardo Sierra, Patrick Drouin, Sophia Ananiadou
2009	C	`conf`	Bootstrapping a Verb Lexicon for Biomedical Information Extraction. CICLing Giulia Venturi, Simonetta Montemagni, Simone Marchi, Yutaka Sasaki, Paul Thompson, John McNaught, Sophia Ananiadou
2009	A*	`conf`	Classifying Relations for Biomedical Named Entity Disambiguation. EMNLP Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
2009	J	`jnl`	Clinical text classification under the Open and Closed Topic Assumptions. Int. J. Data Min. Bioinform. Yutaka Sasaki, Brian Rea, Sophia Ananiadou
2009	J	`jnl`	Construction of an annotated corpus to support biomedical information extraction. BMC Bioinform. Paul Thompson, Syed A. Iqbal, John McNaught, Sophia Ananiadou
2009	A	`conf`	Fast Full Parsing by Linear-Chain Conditional Random Fields. EACL Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2009	C	`conf`	Improving Full Text Search with Text Mining Tools. NLDB Scott Piao, Brian Rea, John McNaught, Sophia Ananiadou
2009	—	`ed.`	Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009 BioNLP@HLT-NAACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2009	—	`conf`	Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty. ACL/IJCNLP Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2009	—	`ch.`	Text Mining for Biomedicine. Information Retrieval in Biomedicine Sophia Ananiadou
2009	A	`conf`	Three BioNLP Tools Powered by a Biological Lexicon. EACL (Demos) Yutaka Sasaki, Paul Thompson, John McNaught, Sophia Ananiadou
2009	J	`jnl`	U-Compare: share and compare text mining tools with UIMA. Bioinform. Yoshinobu Kano, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun'ichi Tsujii
2008	B	`conf`	A Discriminative Alignment Model for Abbreviation Recognition. COLING Naoaki Okazaki, Sophia Ananiadou, Jun'ichi Tsujii
2008	A*	`conf`	A Discriminative Candidate Generator for String Transformations. EMNLP Naoaki Okazaki, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2008	—	`conf`	Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection. BioNLP Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2008	J	`jnl`	Accelerating the annotation of sparse named entities by dynamic sentence selection. BMC Bioinform. Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2008	B	`conf`	Building a Bio-Event Annotated Corpus for the Acquisition of Semantic Frames from Biomedical Corpora. LREC Paul Thompson, Philip Cotter, John McNaught, Sophia Ananiadou, Simonetta Montemagni, Andrea Trabucco, Giulia Venturi
2008	B	`conf`	Clustering Related Terms with Definitions. LREC Scott Piao, John McNaught, Sophia Ananiadou
2008	B	`conf`	Connecting Text Mining and Pathways using the PathText Resource. LREC Rune Sætre, Brian Kemper, Kanae Oda, Naoaki Okazaki, Yukiko Matsuoka, Norihiro Kikuchi, Hiroaki Kitano, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2008	B	`conf`	Event Frame Extraction Based on a Gene Regulation Corpus. COLING Yutaka Sasaki, Paul Thompson, Philip Cotter, John McNaught, Sophia Ananiadou
2008	J	`jnl`	FACTA: a text search engine for finding associated biomedical concepts. Bioinform. Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2008	Misc	`conf`	Filling the Gaps Between Tools and Users: A Tool Comparator, Using Protein-Protein Interactions as an Example. Pacific Symposium on Biocomputing Yoshinobu Kano, Ngan L. T. Nguyen, Rune Sætre, Kazuhiro Yoshida, Yusuke Miyao, Yoshimasa Tsuruoka, Yuichiroh Matsubayashi, Sophia Ananiadou, Jun'ichi Tsujii
2008	J	`jnl`	Generating Natural Language specifications from UML class diagrams. Requir. Eng. Farid Meziane, Nikos Athanasakis, Sophia Ananiadou
2008	—	`conf`	How to Make the Most of NE Dictionaries in Statistical NER. BioNLP Yutaka Sasaki, Yoshimasa Tsuruoka, John McNaught, Sophia Ananiadou
2008	J	`jnl`	How to make the most of NE dictionaries in statistical NER. BMC Bioinform. Yutaka Sasaki, Yoshimasa Tsuruoka, John McNaught, Sophia Ananiadou
2008	B	`conf`	Identifying Sections in Scientific Abstracts using Conditional Random Fields. IJCNLP Kenji Hirohata, Naoaki Okazaki, Sophia Ananiadou, Mitsuru Ishizuka
2008	A*	`conf`	Kleio: a knowledge-enriched information retrieval system for biology. SIGIR Chikashi Nobata, Philip Cotter, Naoaki Okazaki, Brian Rea, Yutaka Sasaki, Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2008	J	`jnl`	Normalizing biomedical terms by minimizing ambiguity and variability. BMC Bioinform. Yoshimasa Tsuruoka, John McNaught, Sophia Ananiadou
2008	—	`ed.`	Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008 BioNLP Dina Demner-Fushman, Sophia Ananiadou, Kevin Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2008	J	`jnl`	Themes in biomedical natural language processing: BioNLP08. BMC Bioinform. Dina Demner-Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2008	B	`conf`	Towards Data and Goal Oriented Analysis: Tool Inter-operability and Combinatorial Comparison. IJCNLP Yoshinobu Kano, Ngan L. T. Nguyen, Rune Sætre, Kazuhiro Yoshida, Keiichiro Fukamachi, Yusuke Miyao, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2007	—	`conf`	An Annotation Type System for a Data-Driven NLP Pipeline. LAW@ACL Udo Hahn, Ekaterina Buyko, Katrin Tomanek, Scott Piao, John McNaught, Yoshimasa Tsuruoka, Sophia Ananiadou
2007	J	`jnl`	Learning string similarity measures for gene/protein name dictionary look-up using logistic regression. Bioinform. Yoshimasa Tsuruoka, John McNaught, Jun'ichi Tsujii, Sophia Ananiadou
2007	—	`conf`	Multi-topic Aspects in Clinical Text Classification. BIBM Yutaka Sasaki, Brian Rea, Sophia Ananiadou
2007	Misc	`conf`	Text Mining Techniques for Building a Biolexicon. ALTA Sophia Ananiadou
2006	A*	`conf`	A Term Recognition Approach to Acronym Recognition. ACL Naoaki Okazaki, Sophia Ananiadou
2006	J	`jnl`	Building an abbreviation dictionary using a term recognition approach. Bioinform. Naoaki Okazaki, Sophia Ananiadou
2006	B	`conf`	Clustering acronyms in biomedical text for disambiguation. LREC Naoaki Okazaki, Sophia Ananiadou
2006	J	`jnl`	Mining semantically related terms from biomedical literature. ACM Trans. Asian Lang. Inf. Process. Goran Nenadic, Sophia Ananiadou
2006	J	`jnl`	Proceedings of the Second International Symposium for Semantic Mining in Biomedicine. BMC Bioinform. Sophia Ananiadou, Juliane Fluck
2006	—	`ed.`	Proceedings of the Second International Symposium on Semantic Mining in Biomedicine, Jena, Germany, April 9-12, 2006. SMBM Sophia Ananiadou, Juliane Fluck
2006	J	`jnl`	Terminology-based knowledge mining for new knowledge discovery. ACM Trans. Asian Lang. Inf. Process. Hideki Mima, Sophia Ananiadou, Katsumori Matsushima
2006	B	`conf`	Towards a terminological resource for biomedical text mining. LREC Goran Nenadic, Naoaki Okazaki, Sophia Ananiadou
2005	Misc	`conf`	A Flexible Measure of Contextual Similarity for Biomedical Terms. Pacific Symposium on Biocomputing Irena Spasic, Sophia Ananiadou
2005	—	`conf`	A Machine Learning Approach to Acronym Generation. LBLODMBS@IDMB Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2005	—	`conf`	Developing a Robust Part-of-Speech Tagger for Biomedical Text. Panhellenic Conference on Informatics Yoshimasa Tsuruoka, Yuka Tateishi, Jin-Dong Kim, Tomoko Ohta, John McNaught, Sophia Ananiadou, Jun'ichi Tsujii
2005	J	`jnl`	MaSTerClass: a case-based reasoning system for the classification of biomedical terms. Bioinform. Irena Spasic, Sophia Ananiadou, Jun'ichi Tsujii
2005	J	`jnl`	Text mining and ontologies in biomedicine: Making sense of raw text. Briefings Bioinform. Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar
2005	J	`jnl`	Thesaurus or Logical Ontology, Which One Do We Need for Text Mining? Lang. Resour. Evaluation Jun'ichi Tsujii, Sophia Ananiadou
2004	B	`conf`	Enhancing automatic term recognition through recognition of variation. COLING Goran Nenadic, Sophia Ananiadou, John McNaught
2004	B	`conf`	Introduction (Thematic Session: Text Mining in Biomedicine). IJCNLP Sophia Ananiadou, Jong C. Park
2004	J	`jnl`	Introduction: named entity recognition in biomedicine. J. Biomed. Informatics Sophia Ananiadou, Carol Friedman, Jun'ichi Tsujii
2004	C	`conf`	Learning to Classify Biomedical Terms Through Literature Mining and Genetic Algorithms.. IDEAL Irena Spasic, Goran Nenadic, Sophia Ananiadou
2004	B	`conf`	Mining Biomedical Abstracts: What's in a Term? IJCNLP Goran Nenadic, Irena Spasic, Sophia Ananiadou
2004	J	`jnl`	Using automatically learnt verb selectional preferences for classification of biomedical terms. J. Biomed. Informatics Irena Spasic, Sophia Ananiadou
2003	A	`conf`	An Integrated Term-Based Corpus Query System. EACL Kostas Manios, Goran Nenadic, Irena Spasic, Sophia Ananiadou
2003	—	`conf`	Selecting Text Features for Gene Name Classification: from Documents to Terms. BioNLP@ACL Goran Nenadic, Simon B. Rice, Irena Spasic, Sophia Ananiadou, Benjamin J. Stapley
2003	Misc	`conf`	Terminology-driven Mining of Biomedical Literature. SAC Goran Nenadic, Irena Spasic, Sophia Ananiadou
2003	J	`jnl`	Terminology-driven Mining of Biomedical Literature. Bioinform. Goran Nenadic, Irena Spasic, Sophia Ananiadou
2003	—	`conf`	Using Domain-Specific Verbs for Term Classification. BioNLP@ACL Irena Spasic, Goran Nenadic, Sophia Ananiadou
2002	B	`conf`	A Methodology for Terminology-based Knowledge Acquisition and Integration. COLING Hideki Mima, Sophia Ananiadou, Goran Nenadic, Jun'ichi Tsujii
2002	B	`conf`	Automatic Acronym Acquisition and Term Variation Management within Domain-Specific Texts. LREC Goran Nenadic, Irena Spasic, Sophia Ananiadou
2002	J	`jnl`	Spotting and Discovering Terms through Natural Language Processing by Christian Jacquemin. Comput. Linguistics Sophia Ananiadou
2002	C	`conf`	Supervised Learning of Term Similarities. IDEAL Irena Spasic, Goran Nenadic, Kostas Manios, Sophia Ananiadou
2002	—	`conf`	Term Clustering Using a Corpus-Based Similarity Measure. TSD Goran Nenadic, Irena Spasic, Sophia Ananiadou
2002	J	`jnl`	Terminology-driven literature mining and knowledge acquisition in biomedicine. Int. J. Medical Informatics Goran Nenadic, Hideki Mima, Irena Spasic, Sophia Ananiadou, Jun'ichi Tsujii
2002	B	`conf`	Tuning Context Features with Genetic Algorithms. LREC Irena Spasic, Goran Nenadic, Sophia Ananiadou
2001	—	`conf`	The ATRACT Workbench: Automatic Term Recognition and Clustering for Terms. TSD Hideki Mima, Sophia Ananiadou, Goran Nenadic
2000	J	`jnl`	Automatic recognition of multi-word terms: the C-value/NC-value method. Int. J. Digit. Libr. Katerina T. Frantzi, Sophia Ananiadou, Hideki Mima
2000	B	`conf`	Creating and Using Domain-specific Ontologies for Terminological Applications. LREC Diana Maynard, Sophia Ananiadou
2000	B	`conf`	Identifying Terms by their Family and Friends. COLING Diana Maynard, Sophia Ananiadou
1999	—	`conf`	Classifying Technical Terms. ELPUB Katerina T. Frantzi, Sophia Ananiadou, Jun'ichi Tsujii
1998	B	`conf`	Term sense disambiguation using a domain-specific thesaurus. LREC Diana Maynard, Sophia Ananiadou
1998	—	`conf`	The C-value/NC-value Method of Automatic Recognition for Multi-Word Terms. ECDL Katerina T. Frantzi, Sophia Ananiadou, Jun'ichi Tsujii
1996	B	`conf`	Extracting Nested Collocations. COLING Katerina T. Frantzi, Sophia Ananiadou
1995	J	`jnl`	Book review. Mach. Transl. Jutta Frense, Sophia Ananiadou
1994	B	`conf`	A Methodology For Automatic Term Recognition. COLING Sophia Ananiadou
1992	—	`conf`	Automatic Learning for Semantic Collocation. ANLP Satoshi Sekine, Jeremy J. Carroll, Sophia Ananiadou, Jun'ichi Tsujii
1992	B	`conf`	Linguistic Knowledge Generator. COLING Satoshi Sekine, Sophia Ananiadou, Jeremy J. Carroll, Jun'ichi Tsujii
1992	C	`conf`	Visualisation: mediating the interchange of information from the verbal to the visual domain. ISI Patrick Olivier, Sophia Ananiadou, Toshiyuki Maeda, Jun'ichi Tsujii
1990	J	`jnl`	On the definition of word. Mach. Transl. Sophia Ananiadou