Sonja J. Prohaska

25 papers B 2Journal 17Unranked 6
YearRankTypeTitle / Venue / Authors
2016 J jnl
Design specifications for cellular regulation.
Theory Biosci.
David C. Krakauer, Lydia Müller, Sonja J. Prohaska, Peter F. Stadler
2016 J jnl
The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies.
Algorithms Mol. Biol.
Henrike Indrischek, Nicolas Wieseke, Peter F. Stadler, Sonja J. Prohaska
2015 J jnl
Algebraic Dynamic Programming over general data structures.
BMC Bioinform.
Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler
2015 J jnl
The relativity of biological function.
Theory Biosci.
Manfred D. Laubichler, Peter F. Stadler, Sonja J. Prohaska, Katja Nowick
2014 J jnl
A priori assessment of data quality in molecular phylogenetics.
Algorithms Mol. Biol.
Bernhard Misof, Karen Meusemann, Björn Marcus von Reumont, Patrick Kück, Sonja J. Prohaska, Peter F. Stadler
2014 J jnl
Analyzing Chromatin Using Tiled Binned Scatterplot Matrices.
CoRR
Dirk Zeckzer, Daniel Gerighausen, Lydia Steiner, Sonja J. Prohaska
2014 — conf
Comparative Detection of Processed Small RNAs in Archaea.
IWBBIO
Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler
2014 — conf
Dynamic Programming for Set Data Types.
BSB
Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler
2011 B conf
Phylogenetic Footprinting and Consistent Sets of Local Aligments.
CPM
Wolfgang Otto, Peter F. Stadler, Sonja J. Prohaska
2011 J jnl
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis.
BMC Bioinform.
Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska
2010 — conf
Detection of Protein Domains in Eukaryotic Genome Sequences.
BSB
Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska
2010 — conf
Quantitative Comparison of Genomic-Wide Protein Domain Distributions.
GCB
Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska
2009 — conf
Automatic Classification of Embryonic Fruit Fly Gene Expression Patterns.
Bildverarbeitung für die Medizin
Andreas Heffel, Sonja J. Prohaska, Peter F. Stadler, Gerhard Kauer, Jens-Peer Kuska
2009 J jnl
Defining genes: a computational framework.
Theory Biosci.
Peter F. Stadler, Sonja J. Prohaska, Christian V. Forst, David C. Krakauer
2009 J jnl
Discovering cis-regulatory modules by optimizing barbecues.
Discret. Appl. Math.
Axel Mosig, Türker Bíyíkoglu, Sonja J. Prohaska, Peter F. Stadler
2008 J jnl
"Genes".
Theory Biosci.
Sonja J. Prohaska, Peter F. Stadler
2008 J jnl
Noisy: Identification of problematic columns in multiple sequence alignments.
Algorithms Mol. Biol.
Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler
2008 B conf
Process flow for classification and clustering of fruit fly gene expression patterns.
ICIP
Andreas Heffel, Peter F. Stadler, Sonja J. Prohaska, Gerhard Kauer, Jens-Peer Kuska
2008 J jnl
SynBlast: Assisting the analysis of conserved synteny information.
BMC Bioinform.
Jörg Lehmann, Peter F. Stadler, Sonja J. Prohaska
2006 J jnl
Multiple sequence alignment with user-defined anchor points.
Algorithms Mol. Biol.
Burkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler
2005 J jnl
Evolutionary patterns of non-coding RNAs.
Theory Biosci.
Athanasius F. Bompfünewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L. Hofacker, Jörg Lehmann, Kristin Missal, Axel Mosig, Bettina Müller, Sonja J. Prohaska, Bärbel M. R. Stadler, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, Christina Witwer
2005 J jnl
Multiple sequence alignment with user-defined constraints at GOBICS.
Bioinform.
Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran Ramaswami Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff
2004 — conf
Multiple sequence alignment with user-defined constraints.
German Conference on Bioinformatics
Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran Ramaswami Subramanian, Peter F. Stadler
2004 J jnl
The Footprint Sorting Problem.
J. Chem. Inf. Model.
Claudia Fried, Wim Hordijk, Sonja J. Prohaska, Claus R. Stadler, Peter F. Stadler
2004 J jnl
The duplication of the
Theory Biosci.
Sonja J. Prohaska, Peter F. Stadler