Songjian Lu

29 papers A* 2B 2C 2Misc 1Journal 18Unranked 4
YearRankTypeTitle / Venue / Authors
2021 J jnl
ORN: Inferring patient-specific dysregulation status of pathway modules in cancer with OR-gate Network.
PLoS Comput. Biol.
Lifan Liang, Kunju Zhu, Junyan Tao, Songjian Lu
2020 J jnl
BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization.
Bioinform.
Lifan Liang, Kunju Zhu, Songjian Lu
2019 J jnl
Integrating data and knowledge to identify functional modules of genes: a multilayer approach.
BMC Bioinform.
Lifan Liang, Vicky Chen, Kunju Zhu, Xiaonan Fan, Xinghua Lu, Songjian Lu
2019 J jnl
Noisy and Incomplete Boolean Matrix Factorizationvia Expectation Maximization.
CoRR
Lifan Liang, Songjian Lu
2019 J jnl
Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information.
BMC Bioinform.
Xiao-Nan Fan, Shao-Wu Zhang, Song-Yao Zhang, Kunju Zhu, Songjian Lu
2019 J jnl
Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference.
PLoS Comput. Biol.
Chunhui Cai, Gregory F. Cooper, Kevin N. Lu, Xiaojun Ma, Shuping Xu, Zhenlong Zhao, Xueer Chen, Yifan Xue, Adrian V. Lee, Nathan Clark, Vicky Chen, Songjian Lu, Lujia Chen, Liyue Yu, Harry Hochheiser, Xia Jiang, Q. Jane Wang, Xinghua Lu
2016 J jnl
An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem.
Algorithms Mol. Biol.
Songjian Lu, Gunasheil Mandava, Gaibo Yan, Xinghua Lu
2015 J jnl
Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets.
PLoS Comput. Biol.
Songjian Lu, Kevin N. Lu, Shi-Yuan Cheng, Bo Hu, Xiaojun Ma, Nicholas Nystrom, Xinghua Lu
2015 — conf
Identifying driver genomic alterations in cancers by searching minimum-weight, mutually exclusive sets.
BIBM
Songjian Lu, Kevin N. Lu, Shi-Yuan Cheng, Bo Hu, Xiaojun Ma, Nicholas Nystrom, Xinghua Lu
2014 J jnl
An exact algorithm for the weighed mutually exclusive maximum set cover problem.
CoRR
Songjian Lu, Xinghua Lu
2013 J jnl
An exact algorithm with the time complexity of $O^*(1.299^m)$ for the weighed mutually exclusive set cover problem
CoRR
Songjian Lu, Xinghua Lu
2013 J jnl
Using graph model to find transcription factor modules: the hitting set problem and an exact algorithm.
Algorithms Mol. Biol.
Songjian Lu, Xinghua Lu
2012 J jnl
Iterative Expansion and Color Coding: An Improved Algorithm for 3D-Matching.
ACM Trans. Algorithms
Jianer Chen, Yang Liu, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang
2011 — conf
A graph model and an exact algorithm for finding transcription factor modules.
BCB
Songjian Lu, Xinghua Lu
2011 J jnl
Improved deterministic algorithms for weighted matching and packing problems.
Theor. Comput. Sci.
Jianer Chen, Qilong Feng, Yang Liu, Songjian Lu, Jianxin Wang
2009 J jnl
An Improved Parameterized Algorithm for the Minimum Node Multiway Cut Problem.
Algorithmica
Jianer Chen, Yang Liu, Songjian Lu
2009 C conf
Improved Deterministic Algorithms for Weighted Matching and Packing Problems.
TAMC
Qilong Feng, Yang Liu, Songjian Lu, Jianxin Wang
2009 J jnl
Improved Parameterized Set Splitting Algorithms: A Probabilistic Approach.
Algorithmica
Jianer Chen, Songjian Lu
2008 A* conf
A fixed-parameter algorithm for the directed feedback vertex set problem.
STOC
Jianer Chen, Yang Liu, Songjian Lu, Barry O'Sullivan, Igor Razgon
2008 J jnl
A fixed-parameter algorithm for the directed feedback vertex set problem.
J. ACM
Jianer Chen, Yang Liu, Songjian Lu, Barry O'Sullivan, Igor Razgon
2008 J jnl
Improved algorithms for feedback vertex set problems.
J. Comput. Syst. Sci.
Jianer Chen, Fedor V. Fomin, Yang Liu, Songjian Lu, Yngve Villanger
2007 B conf
An Improved Parameterized Algorithm for the Minimum Node Multiway Cut Problem.
WADS
Jianer Chen, Yang Liu, Songjian Lu
2007 — conf
Directed Feedback Vertex Set Problem is FPT.
Structure Theory and FPT Algorithmics for Graphs, Digraphs and Hypergraphs
Jianer Chen, Yang Liu, Songjian Lu
2007 J jnl
Finding Pathway Structures in Protein Interaction Networks.
Algorithmica
Songjian Lu, Fenghui Zhang, Jianer Chen, Sing-Hoi Sze
2007 Misc conf
Improved Algorithms for Weighted and Unweighted Set Splitting Problems.
COCOON
Jianer Chen, Songjian Lu
2007 B conf
Improved Algorithms for the Feedback Vertex Set Problems.
WADS
Jianer Chen, Fedor V. Fomin, Yang Liu, Songjian Lu, Yngve Villanger
2007 A* conf
Improved algorithms for path, matching, and packing problems.
SODA
Jianer Chen, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang
2006 — conf
Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms.
IWPEC
Yang Liu, Songjian Lu, Jianer Chen, Sing-Hoi Sze
2004 C conf
Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding.
WABI
Sing-Hoi Sze, Songjian Lu, Jianer Chen