Song He

75 papers B 4C 1Journal 49Unranked 21
YearRankTypeTitle / Venue / Authors
2026 J jnl
ALC-DRKG: an active learning-based framework for dynamic knowledge graph construction for drug repositioning.
Inf. Process. Manag.
Shuaibin Liu, Huiyan Xu, Xintao Wang, Peng Zan, Song He, Xiaochen Bo
2026 J jnl
CompBind: Complex Guided Pretraining-Based Structure-Free Protein-Ligand Affinity Prediction.
J. Chem. Inf. Model.
Duoyun Yi, Yanpeng Zhao, Huiyan Xu, Yixin Zhang, Mengxuan Wan, Peng Zan, Song He, Xiaochen Bo
2026 J jnl
DC-TSCM: an interpretable dual-channel traditional Chinese medicine syndrome classification model
PeerJ Comput. Sci.
Jialu Tang, Song He
2026 J jnl
Knowledge compensation for event argument extraction via AMR-guided dynamic probability gain.
Expert Syst. Appl.
Song He, Wenli Du, Xin Peng, Zhangpeng Wei, Xin Li
2026 J jnl
MMPCS: multi-view molecular pretraining based on consistency information and specific information.
Bioinform.
Chenyang Xie, Yingying Song, Song He, Xiaochen Bo, Zhongnan Zhang
2026 J jnl
MOCT: A Multi-Class Oblique Tree Algorithm for Synergistic Drug Combination Prediction.
IEEE Trans. Comput. Biol. Bioinform.
Zhikai Lin, Jing Chen, Lianlian Wu, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2026 J jnl
Prediction of gene expression levels in Saccharomyces cerevisiae based on chromatin accessibility using multiple machine learning models.
Comput. Biol. Chem.
Biyu Dong, Bin Hu, Peiheng Jia, Chao Ren, Pengzhen Hu, Guohang He, Song He, Hebing Chen, Yiming Lu, Yating Liang
2026 J jnl
SHIFT-DRP: Dynamic Multi-Scale Active Learning for Drug Response Prediction.
J. Chem. Inf. Model.
Xintao Wang, Huiyan Xu, Yanpeng Zhao, Shuaibin Liu, Peng Zan, Song He, Xiaochen Bo
2025 J jnl
A feature pair-based neural network embedded decision tree for synergistic drug combination prediction.
Pattern Recognit.
Jiayu Zou, Lianlian Wu, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2025 B conf
Geometric Diffusion Model Based on Stochastic Differential Equations for 3D Molecular Generation.
IJCNN
Xinyi Guan, Song He, Xiaochen Bo, Zhongnan Zhang
2025 J jnl
Learning generic and specific prompts with contrastive constraints for multi-task visual scene understanding.
Neurocomputing
Tianyu Han, Zhimin Xu, Wanying Li, Haohao Hu, Xinxin He, Song He, Peng Zan, Xiaochen Bo
2025 J jnl
Multi-hierarchical error-aware contrastive learning for event argument extraction.
Knowl. Based Syst.
Song He, Wenli Du, Xin Peng, Zhangpeng Wei, Xin Li
2025 J jnl
Multi-task multi-view and iterative error-correcting random forest for acute toxicity prediction.
Expert Syst. Appl.
Jie Gao, Lianlian Wu, Guangyi Lin, Jiayu Zou, Bowei Yan, Kunhong Liu, Song He, Xiaochen Bo
2025 J jnl
Multimodal artificial intelligence for subepithelial lesion classification and characterization: a multicenter comparative study (with video).
BMC Medical Informatics Decis. Mak.
Jiao Li, Xiaojuan Jing, Qin Zhang, Xiaoxiang Wang, Li Wang, Jing Shan, Zhengkui Zhou, Lin Fan, Xun Gong, Xiaobin Sun, Song He
2025 J jnl
RL-GCL: Reinforcement Learning-Guided Contrastive Learning for molecular property prediction.
Inf. Fusion
Yanran Fu, Junshan Han, Yong Xu, Kunhong Liu, Jiang Lu, Song He, Xiaochen Bo
2025 C conf
SNACK: Loss Recovery Through Explicit Notification Combined with Selective Nack.
IPCCC
Jiasheng Wang, Yuehao Xu, Song He, Haotian Wu, Jian Yu, Zhijun Ding
2024 J jnl
A hierarchical attention network integrating multi-scale relationship for drug response prediction.
Inf. Fusion
Xiaoqi Wang, Yuqi Wen, Yixin Zhang, Chong Dai, Yaning Yang, Xiaochen Bo, Song He, Shaoliang Peng
2024 J jnl
An Aerial Target Recognition Algorithm Based on Self-Attention and LSTM.
Comput. Mater. Continua
Futai Liang, Xin Chen, Song He, Zihao Song, Hao Lu
2024 J jnl
An Ensemble Cascade Forest-Based Framework for Multi-Omics Drug Response and Synergy Prediction.
Adv. Intell. Syst.
Ruijiang Li, Binsheng Sui, Dongjin Leng, Song He, Kunhong Liu, Xiaochen Bo
2024 — conf
CPDT: A Novel Cluster-based Paired Decision Tree for Identifying Biomedical Entity Interactions.
BIBM
Jiayu Zou, Lianlian Wu, Weiping Lin, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2024 — conf
Exploring Optimal Transport-Based Multi-Grained Alignments for Text-Molecule Retrieval.
BIBM
Zijun Min, Bingshuai Liu, Liang Zhang, Jia Song, Jinsong Su, Song He, Xiaochen Bo
2024 J jnl
Exploring Optimal Transport-Based Multi-Grained Alignments for Text-Molecule Retrieval.
CoRR
Zijun Min, Bingshuai Liu, Liang Zhang, Jia Song, Jinsong Su, Song He, Xiaochen Bo
2024 J jnl
Multi-view uncertainty deep forest: An innovative deep forest equipped with uncertainty estimation for drug-induced liver injury prediction.
Inf. Sci.
Qiong Tan, Yuqi Wen, Yong Xu, Kunhong Liu, Song He, Xiaochen Bo
2024 J jnl
Reusability report: exploring the utility of variational graph encoders for predicting molecular toxicity in drug design.
Nat. Mac. Intell.
Ruijiang Li, Jiang Lu, Ziyi Liu, Duoyun Yi, Mengxuan Wan, Yixin Zhang, Peng Zan, Song He, Xiaochen Bo
2024 — conf
Towards Cross-Modal Text-Molecule Retrieval with Better Modality Alignment.
BIBM
Jia Song, Wanru Zhuang, Yujie Lin, Liang Zhang, Chunyan Li, Jinsong Su, Song He, Xiaochen Bo
2024 J jnl
Towards Cross-Modal Text-Molecule Retrieval with Better Modality Alignment.
CoRR
Jia Song, Wanru Zhuang, Yujie Lin, Liang Zhang, Chunyan Li, Jinsong Su, Song He, Xiaochen Bo
2024 — conf
ZSEE: A Dataset based on Zeolite Synthesis Event Extraction for Automated Synthesis Platform.
NAACL-HLT (Findings)
Song He, Xin Peng, Yihan Cai, Xin Li, Zhiqing Yuan, Wenli Du, Weimin Yang
2023 J jnl
A Genetic Algorithm-Based Ensemble Learning Framework for Drug Combination Prediction.
J. Chem. Inf. Model.
Lianlian Wu, Xiaona Ye, Yixin Zhang, Jie Gao, Zhikai Lin, Binsheng Sui, Yuqi Wen, Qingqiang Wu, Kunhong Liu, Song He, Xiaochen Bo
2023 — conf
A Multi-View Learning-Based Bayesian Ruleset Extraction Algorithm For Accurate Hepatotoxicity Prediction.
BIBM
Siyang Chen, Lianlian Wu, Yong Xu, Kunhong Liu, Song He, Xiaochen Bo
2023 J jnl
COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods.
Bioinform.
Xiaojing Wu, Mingfei Han, Xinyu Song, Song He, Xiaochen Bo, Yunping Zhu
2023 J jnl
Contour-Context Joint Blind Image Inpainting Network for Molecular Sieve Particle Size Measurement of SEM Images.
IEEE Trans. Instrum. Meas.
Song He, Xin Peng, Zhiqing Yuan, Wenli Du
2023 J jnl
Deep Learning-Based Multiomics Data Integration Methods for Biomedical Application.
Adv. Intell. Syst.
Yuqi Wen, Linyi Zheng, Dongjin Leng, Chong Dai, Jing Lu, Zhongnan Zhang, Song He, Xiaochen Bo
2023 — conf
Drug-target and Drug-disease Association Prediction based on Drug-target-disease Network and Multi-task Learning.
BIBM
Binyu Wang, Yunhao Zhang, Hongyan Ye, Lianlian Wu, Song He, Xiaochen Bo, Zhongnan Zhang
2023 J jnl
EDST: a decision stump based ensemble algorithm for synergistic drug combination prediction.
BMC Bioinform.
Jing Chen, Lianlian Wu, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2023 J jnl
GADRP: graph convolutional networks and autoencoders for cancer drug response prediction.
Briefings Bioinform.
Hong Wang, Chong Dai, Yuqi Wen, Xiaoqi Wang, Wenjuan Liu, Song He, Xiaochen Bo, Shaoliang Peng
2023 B conf
HSGCL-DTA: Hybrid-scale Graph Contrastive Learning based Drug-Target Binding Affinity Prediction.
ICTAI
Hongyan Ye, Yingying Song, Binyu Wang, Lianlian Wu, Song He, Xiaochen Bo, Zhongnan Zhang
2023 — conf
MoSCHG: Multi-omics Single-cell Classification based on Heterogeneous Graphs and Supervised Contrastive Learning.
BIBM
Xinjian Chen, Chenyang Xie, Yunhao Zhang, Song He, Xiaochen Bo, Zhongnan Zhang
2023 — conf
Research on Student Classroom Attention Detection Based on Multi-Feature Fusion.
CAIBDA
Jihu Sun, Long Ma, Song He, Qiushi Xi, Jun Hu
2023 J jnl
Similarity matching of medical question based on Siamese network.
BMC Medical Informatics Decis. Mak.
Qing Li, Song He
2023 J jnl
TOXRIC: a comprehensive database of toxicological data and benchmarks.
Nucleic Acids Res.
Lianlian Wu, Bowei Yan, Junshan Han, Ruijiang Li, Jian Xiao, Song He, Xiaochen Bo
2022 — conf
A Multi-View Learning-Based Rule Extraction Algorithm For Accurate Hepatotoxicity Prediction.
BIBM
Yuting Zhong, Bowei Yan, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2022 J jnl
An enhanced cascade-based deep forest model for drug combination prediction.
Briefings Bioinform.
Weiping Lin, Lianlian Wu, Yixin Zhang, Yuqi Wen, Bowei Yan, Chong Dai, Kun-Hong Liu, Song He, Xiaochen Bo
2022 J jnl
Computational methods, databases and tools for synthetic lethality prediction.
Briefings Bioinform.
Jing Wang, Qinglong Zhang, Junshan Han, Yanpeng Zhao, Caiyun Zhao, Bowei Yan, Chong Dai, Lianlian Wu, Yuqi Wen, Yixin Zhang, Dongjin Leng, Zhongming Wang, Xiaoxi Yang, Song He, Xiaochen Bo
2022 J jnl
DTI-HETA: prediction of drug-target interactions based on GCN and GAT on heterogeneous graph.
Briefings Bioinform.
Kanghao Shao, Yunhao Zhang, Yuqi Wen, Zhongnan Zhang, Song He, Xiaochen Bo
2022 J jnl
Machine learning methods, databases and tools for drug combination prediction.
Briefings Bioinform.
Lianlian Wu, Yuqi Wen, Dongjin Leng, Qinglong Zhang, Chong Dai, Zhongming Wang, Ziqi Liu, Bowei Yan, Yixin Zhang, Jing Wang, Song He, Xiaochen Bo
2022 J jnl
PLA-MoRe: A Protein-Ligand Binding Affinity Prediction Model via Comprehensive Molecular Representations.
J. Chem. Inf. Model.
Qingyu Li, Xiaochang Zhang, Lianlian Wu, Xiaochen Bo, Song He, Shengqi Wang
2022 J jnl
Systematic optimization of host-directed therapeutic targets and preclinical validation of repositioned antiviral drugs.
Briefings Bioinform.
Dafei Xie, Song He, Lu Han, Lianlian Wu, Hai Huang, Huan Tao, Pingkun Zhou, Xunlong Shi, Hui Bai, Xiaochen Bo
2021 — conf
A Metagraph-Based Model for Predicting Drug-Target Interaction on Heterogeneous Network.
ICANN (1)
Peng Ke, Yuqi Wen, Zhongnan Zhang, Song He, Xiaochen Bo
2021 — conf
An Adaptive Search Algorithm with Scatter and Tabu Strategy for Multidimensional Knapsack Problem.
ISICA
Song He, Wei Li
2021 J jnl
COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data.
PLoS Comput. Biol.
Song He, Xinyu Song, Xiaoxi Yang, Jijun Yu, Yuqi Wen, Lianlian Wu, Bowei Yan, Jiannan Feng, Xiaochen Bo
2021 — conf
Drug-target interaction prediction based on nonnegative and self-representative matrix factorization.
BIBM
Yihua Ye, Yuxin Chen, Zhongnan Zhang, Yuqi Wen, Song He, Xiaochen Bo
2021 — conf
Impact of Evaporated AuNP Thickness on Pseudo-MOS and Its Application in Direct MicroRNA-375 Detection.
ASICON
Haihua Wang, Song He, Kai Xiao, Yu-Long Jiang, Jing Wan
2021 J jnl
Multi-dimensional data integration algorithm based on random walk with restart.
BMC Bioinform.
Yuqi Wen, Xinyu Song, Bowei Yan, Xiaoxi Yang, Lianlian Wu, Dongjin Leng, Song He, Xiaochen Bo
2021 J jnl
NegStacking: Drug-Target Interaction Prediction Based on Ensemble Learning and Logistic Regression.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jie Yang, Song He, Zhongnan Zhang, Xiaochen Bo
2021 J jnl
Synthetic Lethal Interactions Prediction Based on Multiple Similarity Measures Fusion.
J. Comput. Sci. Technol.
Lianlian Wu, Yuqi Wen, Xiaoxi Yang, Bowei Yan, Song He, Xiaochen Bo
2020 B conf
DTIGCCN: Prediction of drug-target interactions based on GCN and CNN.
ICTAI
Kanghao Shao, Zhongnan Zhang, Song He, Xiaochen Bo
2020 J jnl
Domain-adversarial multi-task framework for novel therapeutic property prediction of compounds.
Bioinform.
Lingwei Xie, Song He, Zhongnan Zhang, Kunhui Lin, Xiaochen Bo, Shu Yang, Boyuan Feng, Kun Wan, Kang Yang, Jie Yang, Yufei Ding
2020 J jnl
PIMD: An Integrative Approach for Drug Repositioning Using Multiple Characterization Fusion.
Genom. Proteom. Bioinform.
Song He, Yuqi Wen, Xiaoxi Yang, Zhen Liu, Xinyu Song, Xin Huang, Xiaochen Bo
2019 J jnl
Steering Angle Measurement of UAV Navigation Based on Improved Image Processing.
J. Inf. Hiding Multim. Signal Process.
Song He, Xingwu Chen, Mao-Hsiung Hung, Xiaoyong Chen, Yufeng Ji
2018 — conf
DTI-RCNN: New Efficient Hybrid Neural Network Model to Predict Drug-Target Interactions.
ICANN (1)
Xiaoping Zheng, Song He, Xinyu Song, Zhongnan Zhang, Xiaochen Bo
2018 J jnl
Domain-Adversarial Multi-Task Framework for Novel Therapeutic Property Prediction of Compounds.
CoRR
Lingwei Xie, Song He, Shu Yang, Boyuan Feng, Kun Wan, Zhongnan Zhang, Xiaochen Bo, Yufei Ding
2018 — conf
Prediction of DTIs for high-dimensional and class-imbalanced data based on CGAN.
BIBM
Kang Yang, Zhongnan Zhang, Song He, Xiaochen Bo
2018 J jnl
Study on A High-integrated Cloud-Based Customer Relationship Management System.
CoRR
Emre Erturk, Song He
2018 — conf
paraSNF: An Parallel Approach for Large-Scale Similarity Network Fusion.
ACA
Xiaolong Shen, Song He, Minquan Fang, Yuqi Wen, Xiaochen Bo, Yong Dou
2017 — conf
Application of data mining technology in TCM diagnosis and treatment.
BIBM
Wenliang Chen, Song He
2017 J jnl
BNY Mellon Optimization Reduces Intraday Credit Risk by $1.4 Trillion.
Interfaces
Brian Blank, Erika Lunceford, John Morik, Song He, Madhusudan Rana, Pavithran Rajendran, Gnanadeeban Gnanapandithan, Katherine Lajoie, Boris Kats, Madangopal Revoor, Victor O'Laughlen, Prasad Lakshminarsimha Kompella
2017 — conf
Drug - target interaction prediction with a deep-learning-based model.
BIBM
Lingwei Xie, Zhongnan Zhang, Song He, Xiaochen Bo, Xinyu Song
2017 J jnl
NFPscanner: a webtool for knowledge-based deciphering of biomedical networks.
BMC Bioinform.
Wenjian Xu, Yang Cao, Ziwei Xie, Haochen He, Song He, Hao Hong, Xiaochen Bo, Fei Li
2016 J jnl
ICM: a web server for integrated clustering of multi-dimensional biomedical data.
Nucleic Acids Res.
Song He, Haochen He, Wenjian Xu, Xin Huang, Shuai Jiang, Fei Li, Fuchu He, Xiaochen Bo
2015 J jnl
Worms Propagation Modeling and Analysis in Big Data Environment.
Int. J. Distributed Sens. Networks
Song He, Can Zhang, Wei Guo, Lidong Zhai
2012 B conf
A novel secondary user assisted relay mechanism in cognitive radio networks with multiple primary users.
GLOBECOM
Song He, Lingge Jiang, Chen He
2010 — conf
Optimization of landscape ecological pattern in abandoned mines based on GIS.
Geoinformatics
Yanling Zhao, Heyu Zhang, Bing Chen, Song He
2009 — conf
Component Library-Based ERP Software Development Methodology.
IESA
Song He, Huiyou Chang, Qing Wang
2008 — conf
BSMDR: A B/S UI Framework Based on MDR.
IESA
Panxiang Zhang, Song He, Qing Wang, Huiyou Chang
1996 J jnl
Stabilizing the Richardson Algorithm by Controlling Chaos
CoRR
Song He