Son K. Pham

12 papers B 2C 2Journal 8
YearRankTypeTitle / Venue / Authors
2017 J jnl
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes.
Bioinform.
Ilya Minkin, Son K. Pham, Paul Medvedev
2016 J jnl
TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes.
CoRR
Ilya Minkin, Son K. Pham, Paul Medvedev
2014 J jnl
ExSPAnder: a universal repeat resolver for DNA fragment assembly.
Bioinform.
Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner
2014 J jnl
Ragout - a reference-assisted assembly tool for bacterial genomes.
Bioinform.
Mikhail Kolmogorov, Brian J. Raney, Benedict Paten, Son K. Pham
2013 J jnl
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.
J. Comput. Biol.
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
2013 C conf
Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes.
WABI
Ilya Minkin, Anand Patel, Mikhail Kolmogorov, Nikolay Vyahhi, Son K. Pham
2012 C conf
From de Bruijn Graphs to Rectangle Graphs for Genome Assembly.
WABI
Nikolay Vyahhi, Alex Pyshkin, Son K. Pham, Pavel A. Pevzner
2012 B conf
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.
RECOMB
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
2012 J jnl
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing.
J. Comput. Biol.
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2011 B conf
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers.
RECOMB
Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner
2011 J jnl
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers.
J. Comput. Biol.
Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner
2010 J jnl
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments.
Bioinform.
Son K. Pham, Pavel A. Pevzner