Solon P. Pissis

269 papers A* 9A 11B 42C 31Misc 4Journal 143Unranked 28
YearRankTypeTitle / Venue / Authors
2026 J jnl
Fast Assessment of Eulerian Trails in Graphs with Applications.
ACM Trans. Knowl. Discov. Data
Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giulia Punzi
2026 — conf
Maximal Palindromes in MPC: Simple and Optimal.
SOSA
Solon P. Pissis
2026 J jnl
Optimal Enumeration of Eulerian Trails in Directed Graphs.
CoRR
Ben Bals, Solon P. Pissis, Matei Tinca
2026 — conf
Text Indexing and Pattern Matching with Ephemeral Edits.
SOSA
Solon P. Pissis
2025 J jnl
Contextual Pattern Mining and Counting.
CoRR
Ling Li, Daniel Gibney, Sharma V. Thankachan, Solon P. Pissis, Grigorios Loukides
2025 J jnl
Elastic-degenerate string comparison.
Inf. Comput.
Estéban Gabory, Njagi Moses Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba
2025 B conf
Faster Approximate Elastic-Degenerate String Matching - Part A.
CPM
Solon P. Pissis, Jakub Radoszewski, Wiktor Zuba
2025 B conf
Faster Approximate Elastic-Degenerate String Matching - Part B.
CPM
Pawel Gawrychowski, Adam Górkiewicz, Pola Marciniak, Solon P. Pissis, Karol Pokorski
2025 J jnl
Faster ED-String Matching with
CoRR
Pawel Gawrychowski, Adam Górkiewicz, Pola Marciniak, Solon P. Pissis, Karol Pokorski
2025 J jnl
Heavy Nodes in a Small Neighborhood: Exact and Peeling Algorithms With Applications.
IEEE Trans. Knowl. Data Eng.
Ling Li, Hilde Verbeek, Huiping Chen, Grigorios Loukides, Robert Gwadera, Leen Stougie, Solon P. Pissis
2025 A* conf
Indexing Strings with Utilities.
ICDE
Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Veronica Guerrini, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis
2025 J jnl
Indexing Strings with Utilities.
CoRR
Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Veronica Guerrini, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis
2025 J jnl
Maximal Palindromes in MPC: Simple and Optimal.
CoRR
Solon P. Pissis
2025 J jnl
Minimizers in Semi-Dynamic Strings.
CoRR
Wiktor Zuba, Oded Lachish, Solon P. Pissis
2025 B conf
Minimizers in Semi-dynamic Strings.
FCT
Wiktor Zuba, Oded Lachish, Solon P. Pissis
2025 J jnl
Missing value replacement in strings and applications.
Data Min. Knowl. Discov.
Giulia Bernardini, Chang Liu, Grigorios Loukides, Alberto Marchetti-Spaccamela, Solon P. Pissis, Leen Stougie, Michelle Sweering
2025 — conf
On String and Graph Sanitization.
From Strings to Graphs, and Back Again
Giulia Bernardini, Huiping Chen, Grigorios Loukides, Solon P. Pissis
2025 — conf
Optimal prefix-suffix queries with applications.
SOSA
Solon P. Pissis
2025 A* conf
Resilient Pattern Mining.
ICDM
Pengxin Bian, Panagiotis Charalampopoulos, Lorraine A. K. Ayad, Manal Mohamed, Solon P. Pissis, Grigorios Loukides
2025 J jnl
Resilient Pattern Mining.
CoRR
Pengxin Bian, Panagiotis Charalampopoulos, Lorraine A. K. Ayad, Manal Mohamed, Solon P. Pissis, Grigorios Loukides
2025 B conf
Shortest Undirected Paths in de Bruijn Graphs.
CPM
Wiktor Zuba, Oded Lachish, Solon P. Pissis
2025 J jnl
Subsequence Covers of Words.
CoRR
Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen, Wiktor Zuba
2025 J jnl
Subsequence covers of words.
Theor. Comput. Sci.
Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen, Wiktor Zuba
2025 J jnl
Subtree Mode and Applications.
CoRR
Jialong Zhou, Ben Bals, Matei Tinca, Ai Guan, Panagiotis Charalampopoulos, Grigorios Loukides, Solon P. Pissis
2025 C conf
Testing Quasiperiodicity.
SPIRE
Christine Awofeso, Ben Bals, Oded Lachish, Solon P. Pissis
2025 J jnl
Testing Quasiperiodicity.
CoRR
Christine Awofeso, Ben Bals, Oded Lachish, Solon P. Pissis
2025 J jnl
Text Indexing and Pattern Matching with Ephemeral Edits.
CoRR
Solon P. Pissis
2025 J jnl
Text indexing for long patterns using locally consistent anchors.
VLDB J.
Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis
2025 B conf
U-Index: A Universal Indexing Framework for Matching Long Patterns.
SEA
Lorraine A. K. Ayad, Gabriele Fici, Ragnar Groot Koerkamp, Grigorios Loukides, Rob Patro, Giulio Ermanno Pibiri, Solon P. Pissis
2025 J jnl
U-index: A Universal Indexing Framework for Matching Long Patterns.
CoRR
Lorraine A. K. Ayad, Gabriele Fici, Ragnar Groot Koerkamp, Grigorios Loukides, Rob Patro, Giulio Ermanno Pibiri, Solon P. Pissis
2025 A conf
When Is String Reconstruction Using de Bruijn Graphs Hard?
ESA
Ben Bals, Sebastiaan van Krieken, Solon P. Pissis, Leen Stougie, Hilde Verbeek
2025 J jnl
When is String Reconstruction using de Bruijn Graphs Hard?
CoRR
Ben Bals, Sebastiaan van Krieken, Solon P. Pissis, Leen Stougie, Hilde Verbeek
2024 C ed.
24th International Workshop on Algorithms in Bioinformatics, WABI 2024, Royal Holloway, London, United Kingdom, September 2-4, 2024
WABI
Solon P. Pissis, Wing-Kin Sung
2024 A conf
Approximate Circular Pattern Matching Under Edit Distance.
STACS
Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen, Wiktor Zuba
2024 J jnl
Approximate Circular Pattern Matching under Edit Distance.
CoRR
Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen, Wiktor Zuba
2024 B conf
Approximate Suffix-Prefix Dictionary Queries.
MFCS
Wiktor Zuba, Grigorios Loukides, Solon P. Pissis, Sharma V. Thankachan
2024 B conf
Connecting de Bruijn Graphs.
CPM
Giulia Bernardini, Huiping Chen, Inge Li Gørtz, Christoffer Krogh, Grigorios Loukides, Solon P. Pissis, Leen Stougie, Michelle Sweering
2024 J jnl
Ego-Network Segmentation via (Weighted) Jaccard Median.
IEEE Trans. Knowl. Data Eng.
Haodi Zhong, Grigorios Loukides, Alessio Conte, Solon P. Pissis
2024 J jnl
Elastic-Degenerate String Comparison.
CoRR
Estéban Gabory, Njagi Moses Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba
2024 J jnl
Elastic-Degenerate String Matching with 1 Error or Mismatch.
Theory Comput. Syst.
Giulia Bernardini, Estéban Gabory, Solon P. Pissis, Leen Stougie, Michelle Sweering, Wiktor Zuba
2024 A conf
Gapped String Indexing in Subquadratic Space and Sublinear Query Time.
STACS
Philip Bille, Inge Li Gørtz, Moshe Lewenstein, Solon P. Pissis, Eva Rotenberg, Teresa Anna Steiner
2024 B conf
Minimizing the Minimizers via Alphabet Reordering.
CPM
Hilde Verbeek, Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis
2024 J jnl
Minimizing the Minimizers via Alphabet Reordering.
CoRR
Hilde Verbeek, Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis
2024 J jnl
On Breaking Truss-based and Core-based Communities.
ACM Trans. Knowl. Discov. Data
Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Solon P. Pissis, Michelle Sweering
2024 J jnl
Optimal prefix-suffix queries with applications.
CoRR
Solon P. Pissis
2024 J jnl
Pangenome comparison via ED strings.
Frontiers Bioinform.
Estéban Gabory, Njagi Moses Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba
2024 J jnl
Pattern Masking for Dictionary Matching: Theory and Practice.
Algorithmica
Panagiotis Charalampopoulos, Huiping Chen, Peter Christen, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski
2024 A ed.
Proceedings of the 26th Symposium on Algorithm Engineering and Experiments, ALENEX 2024, Alexandria, VA, USA, January 7-8, 2024
ALENEX
Rezaul Chowdhury, Solon P. Pissis
2024 A* conf
Scalable Order-Preserving Pattern Mining.
ICDM
Ling Li, Wiktor Zuba, Grigorios Loukides, Solon P. Pissis, Maria Matsangidou
2024 J jnl
Scalable Order-Preserving Pattern Mining.
CoRR
Ling Li, Wiktor Zuba, Grigorios Loukides, Solon P. Pissis, Maria Matsangidou
2024 — conf
Size-Constrained Weighted Ancestors with Applications.
SWAT
Philip Bille, Yakov Nekrich, Solon P. Pissis
2024 A* conf
Space-Efficient Indexes for Uncertain Strings.
ICDE
Estéban Gabory, Chang Liu, Grigorios Loukides, Solon P. Pissis, Wiktor Zuba
2024 J jnl
Space-Efficient Indexes for Uncertain Strings.
CoRR
Estéban Gabory, Chang Liu, Grigorios Loukides, Solon P. Pissis, Wiktor Zuba
2024 — conf
Sparse Suffix and LCP Array: Simple, Direct, Small, and Fast.
LATIN (1)
Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis, Hilde Verbeek
2024 J jnl
Text Indexing for Long Patterns using Locally Consistent Anchors.
CoRR
Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis
2024 A conf
Utility-Oriented String Mining.
SDM
Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Veronica Guerrini, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis
2023 J jnl
Bidirectional String Anchors for Improved Text Indexing and Top-$K$ Similarity Search.
IEEE Trans. Knowl. Data Eng.
Grigorios Loukides, Solon P. Pissis, Michelle Sweering
2023 B conf
Comparing Elastic-Degenerate Strings: Algorithms, Lower Bounds, and Applications.
CPM
Estéban Gabory, Njagi Moses Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba
2023 C conf
Frequency-Constrained Substring Complexity.
SPIRE
Solon P. Pissis, Michael Shekelyan, Chang Liu, Grigorios Loukides
2023 A conf
Heavy Nodes in a Small Neighborhood: Algorithms and Applications.
SDM
Huiping Chen, Grigorios Loukides, Robert Gwadera, Solon P. Pissis
2023 J jnl
Hide and Mine in Strings: Hardness, Algorithms, and Experiments.
IEEE Trans. Knowl. Data Eng.
Giulia Bernardini, Alessio Conte, Garance Gourdel, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giulia Punzi, Leen Stougie, Michelle Sweering
2023 J jnl
Maximal degenerate palindromes with gaps and mismatches.
Theor. Comput. Sci.
Mai Alzamel, Christopher Hampson, Costas S. Iliopoulos, Zara Lim, Solon P. Pissis, Dimitrios Vlachakis, Steven Watts
2023 J jnl
Size-constrained Weighted Ancestors with Applications.
CoRR
Philip Bille, Yakov Nekrich, Solon P. Pissis
2023 J jnl
Sparse Suffix and LCP Array: Simple, Direct, Small, and Fast.
CoRR
Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis, Hilde Verbeek
2023 B conf
Substring Complexity in Sublinear Space.
ISAAC
Giulia Bernardini, Gabriele Fici, Pawel Gawrychowski, Solon P. Pissis
2023 B conf
Suffix-Prefix Queries on a Dictionary.
CPM
Grigorios Loukides, Solon P. Pissis, Sharma V. Thankachan, Wiktor Zuba
2023 J jnl
Text Indexing for Long Patterns: Anchors are All you Need.
Proc. VLDB Endow.
Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis
2022 J jnl
All-pairs suffix/prefix in optimal time using Aho-Corasick space.
Inf. Process. Lett.
Grigorios Loukides, Solon P. Pissis
2022 A conf
Approximate Circular Pattern Matching.
ESA
Panagiotis Charalampopoulos, Tomasz Kociumaka, Jakub Radoszewski, Solon P. Pissis, Wojciech Rytter, Tomasz Walen, Wiktor Zuba
2022 J jnl
Approximate Circular Pattern Matching.
CoRR
Panagiotis Charalampopoulos, Tomasz Kociumaka, Jakub Radoszewski, Solon P. Pissis, Wojciech Rytter, Tomasz Walen, Wiktor Zuba
2022 J jnl
Clustering Demographics and Sequences of Diagnosis Codes.
IEEE J. Biomed. Health Informatics
Haodi Zhong, Grigorios Loukides, Solon P. Pissis
2022 J jnl
Clustering sequence graphs.
Data Knowl. Eng.
Haodi Zhong, Grigorios Loukides, Solon P. Pissis
2022 J jnl
Efficient Computation of Sequence Mappability.
Algorithmica
Panagiotis Charalampopoulos, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Juliusz Straszynski
2022 J jnl
Elastic-Degenerate String Matching via Fast Matrix Multiplication.
SIAM J. Comput.
Giulia Bernardini, Pawel Gawrychowski, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2022 B conf
Elastic-Degenerate String Matching with 1 Error.
LATIN
Giulia Bernardini, Estéban Gabory, Solon P. Pissis, Leen Stougie, Michelle Sweering, Wiktor Zuba
2022 J jnl
Elastic-Degenerate String Matching with 1 Error.
CoRR
Giulia Bernardini, Estéban Gabory, Solon P. Pissis, Leen Stougie, Michelle Sweering, Wiktor Zuba
2022 J jnl
Gapped String Indexing in Subquadratic Space and Sublinear Query Time.
CoRR
Philip Bille, Inge Li Gørtz, Moshe Lewenstein, Solon P. Pissis, Eva Rotenberg, Teresa Anna Steiner
2022 J jnl
Internal shortest absent word queries in constant time and linear space.
Theor. Comput. Sci.
Golnaz Badkobeh, Panagiotis Charalampopoulos, Dmitry Kosolobov, Solon P. Pissis
2022 A* conf
Jaccard Median for Ego-network Segmentation.
ICDM
Haodi Zhong, Grigorios Loukides, Alessio Conte, Solon P. Pissis
2022 B conf
Longest Palindromic Substring in Sublinear Time.
CPM
Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski
2022 B conf
Making de Bruijn Graphs Eulerian.
CPM
Giulia Bernardini, Huiping Chen, Grigorios Loukides, Solon P. Pissis, Leen Stougie, Michelle Sweering
2022 B conf
On Strings Having the Same Length- k Substrings.
CPM
Giulia Bernardini, Alessio Conte, Estéban Gabory, Roberto Grossi, Grigorios Loukides, Solon P. Pissis, Giulia Punzi, Michelle Sweering
2022 C conf
Subsequence Covers of Words.
SPIRE
Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen, Wiktor Zuba
2022 J jnl
Symbolic Regression is NP-hard.
CoRR
Marco Virgolin, Solon P. Pissis
2022 J jnl
Symbolic Regression is NP-hard.
Trans. Mach. Learn. Res.
Marco Virgolin, Solon P. Pissis
2021 B conf
Beyond the BEST Theorem: Fast Assessment of Eulerian Trails.
FCT
Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giulia Punzi
2021 A conf
Bidirectional String Anchors: A New String Sampling Mechanism.
ESA
Grigorios Loukides, Solon P. Pissis
2021 J jnl
Circular pattern matching with
J. Comput. Syst. Sci.
Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba
2021 J jnl
Combinatorial Algorithms for String Sanitization.
ACM Trans. Knowl. Discov. Data
Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone, Michelle Sweering
2021 J jnl
Constructing Antidictionaries of Long Texts in Output-Sensitive Space.
Theory Comput. Syst.
Lorraine A. K. Ayad, Golnaz Badkobeh, Gabriele Fici, Alice Héliou, Solon P. Pissis
2021 B conf
Constructing Strings Avoiding Forbidden Substrings.
CPM
Giulia Bernardini, Alberto Marchetti-Spaccamela, Solon P. Pissis, Leen Stougie, Michelle Sweering
2021 A* conf
Differentially Private String Sanitization for Frequency-Based Mining Tasks.
ICDM
Huiping Chen, Changyu Dong, Liyue Fan, Grigorios Loukides, Solon P. Pissis, Leen Stougie
2021 J jnl
Efficient pattern matching in elastic-degenerate strings.
Inf. Comput.
Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis
2021 A conf
Faster Algorithms for Longest Common Substring.
ESA
Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2021 J jnl
Faster Algorithms for Longest Common Substring.
CoRR
Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2021 J jnl
IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences.
BMC Bioinform.
Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Steven Watts
2021 J jnl
Influence maximization in the presence of vulnerable nodes: A ratio perspective.
Theor. Comput. Sci.
Huiping Chen, Grigorios Loukides, Solon P. Pissis, Hau Chan
2021 J jnl
Internal Shortest Absent Word Queries in Constant Time and Linear Space.
CoRR
Golnaz Badkobeh, Panagiotis Charalampopoulos, Dmitry Kosolobov, Solon P. Pissis
2021 B conf
Internal Shortest Absent Word Queries.
CPM
Golnaz Badkobeh, Panagiotis Charalampopoulos, Solon P. Pissis
2021 A* conf
On Breaking Truss-Based Communities.
KDD
Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Solon P. Pissis, Michelle Sweering
2021 B conf
Pattern Masking for Dictionary Matching.
ISAAC
Panagiotis Charalampopoulos, Huiping Chen, Peter Christen, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski
2021 J jnl
Reverse-Safe Text Indexing.
ACM J. Exp. Algorithmics
Giulia Bernardini, Huiping Chen, Gabriele Fici, Grigorios Loukides, Solon P. Pissis
2021 J jnl
String Sampling with Bidirectional String Anchors.
CoRR
Grigorios Loukides, Solon P. Pissis, Michelle Sweering
2021 B conf
String Sanitization Under Edit Distance: Improved and Generalized.
CPM
Takuya Mieno, Solon P. Pissis, Leen Stougie, Michelle Sweering
2020 J jnl
Absent words in a sliding window with applications.
Inf. Comput.
Maxime Crochemore, Alice Héliou, Gregory Kucherov, Laurent Mouchard, Solon P. Pissis, Yann Ramusat
2020 J jnl
Approximate pattern matching on elastic-degenerate text.
Theor. Comput. Sci.
Giulia Bernardini, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2020 J jnl
Comparing Degenerate Strings.
Fundam. Informaticae
Mai Alzamel, Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2020 J jnl
Dynamic and Internal Longest Common Substring.
Algorithmica
Amihood Amir, Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski
2020 J jnl
Efficient Data Structures for Range Shortest Unique Substring Queries.
Algorithms
Paniz Abedin, Arnab Ganguly, Solon P. Pissis, Sharma V. Thankachan
2020 J jnl
Efficient Identification of k-Closed Strings.
Int. J. Found. Comput. Sci.
Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Wing-Kin Sung, Steven Watts
2020 J jnl
Faster algorithms for 1-mappability of a sequence.
Theor. Comput. Sci.
Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung
2020 A* conf
Hide and Mine in Strings: Hardness and Algorithms.
ICDM
Giulia Bernardini, Alessio Conte, Garance Gourdel, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giulia Punzi, Leen Stougie, Michelle Sweering
2020 J jnl
Indexing weighted sequences: Neat and efficient.
Inf. Comput.
Carl Barton, Tomasz Kociumaka, Chang Liu, Solon P. Pissis, Jakub Radoszewski
2020 J jnl
Longest property-preserved common factor: A new string-processing framework.
Theor. Comput. Sci.
Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2020 J jnl
Pattern Masking for Dictionary Matching.
CoRR
Panagiotis Charalampopoulos, Huiping Chen, Peter Christen, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski
2020 J jnl
Property Suffix Array with Applications in Indexing Weighted Sequences.
ACM J. Exp. Algorithmics
Panagiotis Charalampopoulos, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis
2020 A conf
Reverse-Safe Data Structures for Text Indexing.
ALENEX
Giulia Bernardini, Huiping Chen, Gabriele Fici, Grigorios Loukides, Solon P. Pissis
2020 — conf
SMART: SuperMaximal approximate repeats tool.
BCB
Lorraine A. K. Ayad, Panagiotis Charalampopoulos, Solon P. Pissis
2020 J jnl
SMART: SuperMaximal approximate repeats tool.
Bioinform.
Lorraine A. K. Ayad, Panagiotis Charalampopoulos, Solon P. Pissis
2020 B conf
String Sanitization Under Edit Distance.
CPM
Giulia Bernardini, Huiping Chen, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Leen Stougie, Michelle Sweering
2020 J jnl
String Sanitization Under Edit Distance: Improved and Generalized.
CoRR
Takuya Mieno, Solon P. Pissis, Leen Stougie, Michelle Sweering
2020 J jnl
Substring Complexity in Sublinear Space.
CoRR
Giulia Bernardini, Gabriele Fici, Pawel Gawrychowski, Solon P. Pissis
2020 B conf
Unary Words Have the Smallest Levenshtein k-Neighbourhoods.
CPM
Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Tomasz Walen, Wiktor Zuba
2019 B ed.
30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019, Pisa, Italy, June 18-20, 2019
CPM
Nadia Pisanti, Solon P. Pissis
2019 B conf
Circular Pattern Matching with k Mismatches.
FCT
Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba
2019 J jnl
Circular Pattern Matching with k Mismatches.
CoRR
Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba
2019 B conf
Constructing Antidictionaries in Output-Sensitive Space.
DCC
Lorraine A. K. Ayad, Golnaz Badkobeh, Gabriele Fici, Alice Héliou, Solon P. Pissis
2019 J jnl
Constructing Antidictionaries in Output-Sensitive Space.
CoRR
Lorraine A. K. Ayad, Golnaz Badkobeh, Gabriele Fici, Alice Héliou, Solon P. Pissis
2019 J jnl
Efficient enumeration of non-equivalent squares in partial words with few holes.
J. Comb. Optim.
Panagiotis Charalampopoulos, Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2019 A* conf
Even Faster Elastic-Degenerate String Matching via Fast Matrix Multiplication.
ICALP
Giulia Bernardini, Pawel Gawrychowski, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2019 J jnl
Even Faster Elastic-Degenerate String Matching via Fast Matrix Multiplication.
CoRR
Giulia Bernardini, Pawel Gawrychowski, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2019 A conf
Longest Common Substring Made Fully Dynamic.
ESA
Amihood Amir, Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski
2019 J jnl
On overabundant words and their application to biological sequence analysis.
Theor. Comput. Sci.
Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos
2019 J jnl
On-line weighted pattern matching.
Inf. Comput.
Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski
2019 B conf
Parameterized Text Indexing with One Wildcard.
DCC
Arnab Ganguly, Wing-Kai Hon, Yu-An Huang, Solon P. Pissis, Rahul Shah, Sharma V. Thankachan
2019 J jnl
Pattern Matching and Consensus Problems on Weighted Sequences and Profiles.
Theory Comput. Syst.
Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2019 C conf
Range Shortest Unique Substring Queries.
SPIRE
Paniz Abedin, Arnab Ganguly, Solon P. Pissis, Sharma V. Thankachan
2019 — conf
String Sanitization: A Combinatorial Approach.
ECML/PKDD (1)
Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2019 J jnl
String Sanitization: A Combinatorial Approach.
CoRR
Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2019 C conf
Weighted Shortest Common Supersequence Problem Revisited.
SPIRE
Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba
2019 J jnl
Weighted Shortest Common Supersequence Problem Revisited.
CoRR
Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba
2018 J jnl
Advances in Algorithms & Combinatorics on Strings (Honoring 60th birthday for Prof. Costas S. Iliopoulos).
Theor. Comput. Sci.
Maxime Crochemore, Solon P. Pissis
2018 J jnl
Alignment-free sequence comparison using absent words.
CoRR
Panagiotis Charalampopoulos, Maxime Crochemore, Gabriele Fici, Robert Mercas, Solon P. Pissis
2018 J jnl
Alignment-free sequence comparison using absent words.
Inf. Comput.
Panagiotis Charalampopoulos, Maxime Crochemore, Gabriele Fici, Robert Mercas, Solon P. Pissis
2018 J jnl
CNEFinder: finding conserved non-coding elements in genomes.
Bioinform.
Lorraine A. K. Ayad, Solon P. Pissis, Dimitris Polychronopoulos
2018 J jnl
Crochemore's Partitioning on Weighted Strings and Applications.
Algorithmica
Carl Barton, Solon P. Pissis
2018 C conf
Degenerate String Comparison and Applications.
WABI
Mai Alzamel, Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2018 B conf
Dictionary Matching in Elastic-Degenerate Texts with Applications in Searching VCF Files On-line.
SEA
Solon P. Pissis, Ahmad Retha
2018 C conf
Efficient Computation of Sequence Mappability.
SPIRE
Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Juliusz Straszynski
2018 J jnl
Efficient Computation of Sequence Mappability.
CoRR
Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Juliusz Straszynski
2018 J jnl
Efficient algorithms for shortest partial seeds in words.
Theor. Comput. Sci.
Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2018 J jnl
Fast Average-Case Pattern Matching on Weighted Sequences.
Int. J. Found. Comput. Sci.
Carl Barton, Chang Liu, Solon P. Pissis
2018 J jnl
Fast phylogenetic inference from typing data.
Algorithms Mol. Biol.
João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz
2018 B conf
Linear-Time Algorithm for Long LCF with k Mismatches.
CPM
Panagiotis Charalampopoulos, Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2018 J jnl
Linear-Time Algorithm for Long LCF with k Mismatches.
CoRR
Panagiotis Charalampopoulos, Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2018 J jnl
Longest Common Factor Made Fully Dynamic.
CoRR
Amihood Amir, Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski
2018 C conf
Longest Common Prefixes with k-Errors and Applications.
SPIRE
Lorraine A. K. Ayad, Carl Barton, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis
2018 J jnl
Longest Common Prefixes with k-Errors and Applications.
CoRR
Lorraine A. K. Ayad, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis
2018 B conf
Longest Common Prefixes with k-Mismatches and Applications.
SOFSEM
Hayam Alamro, Lorraine A. K. Ayad, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis
2018 C conf
Longest Property-Preserved Common Factor.
SPIRE
Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2018 J jnl
Longest Property-Preserved Common Factor.
CoRR
Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2018 B conf
Longest Unbordered Factor in Quasilinear Time.
ISAAC
Tomasz Kociumaka, Ritu Kundu, Manal Mohamed, Solon P. Pissis
2018 J jnl
Longest Unbordered Factor in Quasilinear Time.
CoRR
Tomasz Kociumaka, Ritu Kundu, Manal Mohamed, Solon P. Pissis
2018 C conf
Maximal Motif Discovery in a Sliding Window.
SPIRE
Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Fatima Vayani
2018 C conf
On Extended Special Factors of a Word.
SPIRE
Panagiotis Charalampopoulos, Maxime Crochemore, Solon P. Pissis
2018 J jnl
Preface.
Fundam. Informaticae
Panagiotis Charalampopoulos, Maxime Crochemore, Solon P. Pissis
2018 B conf
Property Suffix Array with Applications.
LATIN
Panagiotis Charalampopoulos, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis
2017 B ed.
16th International Symposium on Experimental Algorithms, SEA 2017, London, UK, June 21-23, 2017
SEA
Costas S. Iliopoulos, Solon P. Pissis, Simon J. Puglisi, Rajeev Raman
2017 J jnl
A faster and more accurate heuristic for cyclic edit distance computation.
Pattern Recognit. Lett.
Lorraine A. K. Ayad, Carl Barton, Solon P. Pissis
2017 C conf
Efficient Computation of Palindromes in Sequences with Uncertainties.
EANN
Mai Alzamel, Jia Gao, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis
2017 Misc conf
Efficient Enumeration of Non-Equivalent Squares in Partial Words with Few Holes.
COCOON
Panagiotis Charalampopoulos, Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2017 C conf
Efficient Identification of k-Closed Strings.
EANN
Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Steven Watts, Wing-Kin Sung
2017 C conf
Efficient Pattern Matching in Elastic-Degenerate Texts.
LATA
Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis
2017 J jnl
Fast circular dictionary-matching algorithm.
Math. Struct. Comput. Sci.
Tanver Athar, Carl Barton, Widmer Bland, Jia Gao, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis
2017 — conf
Faster Algorithms for 1-Mappability of a Sequence.
COCOA (2)
Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung
2017 J jnl
Faster algorithms for 1-mappability of a sequence.
CoRR
Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung
2017 C conf
How to Answer a Small Batch of RMQs or LCA Queries in Practice.
IWOCA
Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis
2017 J jnl
How to answer a small batch of RMQs or LCA queries in practice.
CoRR
Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis
2017 J jnl
Indexing Weighted Sequences: Neat and Efficient.
CoRR
Carl Barton, Tomasz Kociumaka, Chang Liu, Solon P. Pissis, Jakub Radoszewski
2017 C conf
Longest Common Factor After One Edit Operation.
SPIRE
Amihood Amir, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski
2017 B conf
Minimal Absent Words in a Sliding Window and Applications to On-Line Pattern Matching.
FCT
Maxime Crochemore, Alice Héliou, Gregory Kucherov, Laurent Mouchard, Solon P. Pissis, Yann Ramusat
2017 J jnl
On avoided words, absent words, and their application to biological sequence analysis.
Algorithms Mol. Biol.
Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos
2017 B conf
On-Line Pattern Matching on Similar Texts.
CPM
Roberto Grossi, Costas S. Iliopoulos, Chang Liu, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Giovanna Rosone, Fatima Vayani, Luca Versari
2017 C conf
Optimal Computation of Overabundant Words.
WABI
Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos
2017 J jnl
Optimal Computation of Overabundant Words.
CoRR
Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos
2017 C conf
Pattern Matching on Elastic-Degenerate Text with Errors.
SPIRE
Giulia Bernardini, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
2017 — ch.
Searching and Indexing Circular Patterns.
Algorithms for Next-Generation Sequencing Data
Costas S. Iliopoulos, Solon P. Pissis, M. Sohel Rahman
2017 C conf
Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time.
WABI
Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Cátia Vaz
2017 J jnl
emMAW: computing minimal absent words in external memory.
Bioinform.
Alice Héliou, Solon P. Pissis, Simon J. Puglisi
2016 J jnl
Circular sequence comparison: algorithms and applications.
Algorithms Mol. Biol.
Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani
2016 B conf
Efficient Index for Weighted Sequences.
CPM
Carl Barton, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2016 J jnl
Efficient Index for Weighted Sequences.
CoRR
Carl Barton, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2016 J jnl
Efficient Pattern Matching in Elastic-Degenerate Strings.
CoRR
Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis
2016 J jnl
Erratum to: Circular sequence comparison: algorithms and applications.
Algorithms Mol. Biol.
Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani
2016 B conf
Linear-Time Sequence Comparison Using Minimal Absent Words & Applications.
LATIN
Maxime Crochemore, Gabriele Fici, Robert Mercas, Solon P. Pissis
2016 J jnl
Linear-time computation of prefix table for weighted strings & applications.
Theor. Comput. Sci.
Carl Barton, Chang Liu, Solon P. Pissis
2016 J jnl
Linear-time superbubble identification algorithm for genome assembly.
Theor. Comput. Sci.
Ljiljana Brankovic, Costas S. Iliopoulos, Ritu Kundu, Manal Mohamed, Solon P. Pissis, Fatima Vayani
2016 C conf
Near-Optimal Computation of Runs over General Alphabet via Non-Crossing LCE Queries.
SPIRE
Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Ritu Kundu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2016 J jnl
Near-Optimal Computation of Runs over General Alphabet via Non-Crossing LCE Queries.
CoRR
Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Ritu Kundu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2016 C conf
On-Line Pattern Matching on Uncertain Sequences and Applications.
COCOA
Carl Barton, Chang Liu, Solon P. Pissis
2016 C conf
Optimal Computation of Avoided Words.
WABI
Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos
2016 J jnl
Optimal Computation of Avoided Words.
CoRR
Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos
2016 J jnl
Order-preserving indexing.
Theor. Comput. Sci.
Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Marcin Kubica, Alessio Langiu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2016 J jnl
Parameterizing PWM- and Profile-Matching and Knapsack by the feasible-weight solutions count.
CoRR
Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2016 B conf
Pattern Matching and Consensus Problems on Weighted Sequences and Profiles.
ISAAC
Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2016 J jnl
libFLASM: a software library for fixed-length approximate string matching.
BMC Bioinform.
Lorraine A. K. Ayad, Solon P. Pissis, Ahmad Retha
2015 B conf
Accurate and Efficient Methods to Improve Multiple Circular Sequence Alignment.
SEA
Carl Barton, Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis, Ahmad Retha, Fatima Vayani
2015 C conf
Average-Case Optimal Approximate Circular String Matching.
LATA
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis
2015 C conf
Circular Sequence Comparison with q-grams.
WABI
Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani
2015 J jnl
Editorial.
J. Discrete Algorithms
Hideo Bannai, Solon P. Pissis
2015 J jnl
Fast Algorithm for Partial Covers in Words.
Algorithmica
Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2015 J jnl
Fast Average-Case Pattern Matching on Weighted Sequences.
CoRR
Carl Barton, Chang Liu, Solon P. Pissis
2015 — conf
Generalised Implementation for Fixed-Length Approximate String Matching under Hamming Distance and Applications.
IPDPS Workshops
Solon P. Pissis, Ahmad Retha
2015 J jnl
Global and local sequence alignment with a bounded number of gaps.
Theor. Comput. Sci.
Carl Barton, Tomás Flouri, Costas S. Iliopoulos, Solon P. Pissis
2015 — conf
Linear-Time Computation of Prefix Table for Weighted Strings.
WORDS
Carl Barton, Solon P. Pissis
2015 J jnl
Linear-Time Sequence Comparison Using Minimal Absent Words & Applications.
CoRR
Maxime Crochemore, Gabriele Fici, Robert Mercas, Solon P. Pissis
2015 J jnl
Linear-Time Superbubble Identification Algorithm.
CoRR
Ljiljana Brankovic, Costas S. Iliopoulos, Ritu Kundu, Manal Mohamed, Solon P. Pissis, Fatima Vayani
2015 — conf
Parallelising the Computation of Minimal Absent Words.
PPAM (2)
Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis
2014 J jnl
Average-Case Optimal Approximate Circular String Matching.
CoRR
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis
2014 — conf
Detection of Web Spambot in the Presence of Decoy Actions.
BDCloud
Vida Ghanaei, Costas S. Iliopoulos, Solon P. Pissis
2014 B conf
Efficient Algorithms for Shortest Partial Seeds in Words.
CPM
Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2014 J jnl
Extending alignments with k-mismatches and ℓ-gaps.
Theor. Comput. Sci.
Carl Barton, Costas S. Iliopoulos, Inbok Lee, Laurent Mouchard, Kunsoo Park, Solon P. Pissis
2014 J jnl
Fast Algorithm for Partial Covers in Words.
CoRR
Tomasz Kociumaka, Jakub Radoszewski, Wojciech Rytter, Solon P. Pissis, Tomasz Walen
2014 J jnl
Fast algorithms for approximate circular string matching.
Algorithms Mol. Biol.
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis
2014 C conf
Fast and Simple Computations Using Prefix Tables Under Hamming and Edit Distance.
IWOCA
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis, William F. Smyth
2014 J jnl
Linear-time Computation of Minimal Absent Words Using Suffix Array.
CoRR
Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis
2014 J jnl
Linear-time computation of minimal absent words using suffix array.
BMC Bioinform.
Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis
2014 J jnl
MoTeX-II: structured MoTif eXtraction from large-scale datasets.
BMC Bioinform.
Solon P. Pissis
2014 — conf
Optimal Computation of all Repetitions in a Weighted String.
ICABD
Carl Barton, Solon P. Pissis
2014 J jnl
Optimal computation of all tandem repeats in a weighted sequence.
Algorithms Mol. Biol.
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis
2013 — conf
A Generic Vectorization Scheme and a GPU Kernel for the Phylogenetic Likelihood Library.
IPDPS Workshops
Fernando Izquierdo-Carrasco, Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
2013 — conf
Accelerating String Matching on MIC Architecture for Motif Extraction.
PPAM (2)
Solon P. Pissis, Christian Goll, Pavlos Pavlidis, Alexandros Stamatakis
2013 C conf
An Optimal Algorithm for Computing All Subtree Repeats in Trees.
IWOCA
Tomás Flouri, Kassian Kobert, Solon P. Pissis, Alexandros Stamatakis
2013 J jnl
Efficient seed computation revisited.
Theor. Comput. Sci.
Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen
2013 J jnl
Enhanced string covering.
Theor. Comput. Sci.
Tomás Flouri, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Simon J. Puglisi, W. F. Smyth, Wojciech Tyczynski
2013 B conf
Fast Algorithm for Partial Covers in Words.
CPM
Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2013 — conf
GapsMis: flexible sequence alignment with a bounded number of gaps.
BCB
Carl Barton, Tomás Flouri, Costas S. Iliopoulos, Solon P. Pissis
2013 — conf
MoTeX: A word-based HPC tool for MoTif eXtraction.
BCB
Solon P. Pissis, Alexandros Stamatakis, Pavlos Pavlidis
2013 C conf
Order-Preserving Incomplete Suffix Trees and Order-Preserving Indexes.
SPIRE
Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Marcin Kubica, Alessio Langiu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2013 J jnl
Order-Preserving Suffix Trees and Their Algorithmic Applications
CoRR
Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Marcin Kubica, Alessio Langiu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen
2013 J jnl
Querying highly similar sequences.
Int. J. Comput. Biol. Drug Des.
Carl Barton, Mathieu Giraud, Costas S. Iliopoulos, Thierry Lecroq, Laurent Mouchard, Solon P. Pissis
2013 J jnl
Tree template matching in unranked ordered trees.
J. Discrete Algorithms
Michalis Christou, Tomás Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis, Jan Zdárek
2013 J jnl
libgapmis: extending short-read alignments.
BMC Bioinform.
Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
2012 J jnl
An algorithm for mapping short reads to a dynamically changing genomic sequence.
J. Discrete Algorithms
Costas S. Iliopoulos, Derrick G. Kourie, Laurent Mouchard, Themba K. Musombuka, Solon P. Pissis, Corné de Ridder
2012 J jnl
Computing all subtree repeats in ordered trees.
Inf. Process. Lett.
Michalis Christou, Maxime Crochemore, Tomás Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis
2012 — conf
Detection of fixed length web spambot using REAL (read aligner).
CUBE
Mourad Elloumi, Pedram Hayati, Costas S. Iliopoulos, Solon P. Pissis, Arfaat Shah
2012 — conf
GapMis-OMP: Pairwise Short-Read Alignment on Multi-core Architectures.
AIAI (2)
Tomás Flouri, Costas S. Iliopoulos, Kunsoo Park, Solon P. Pissis
2012 — conf
Libgapmis: An ultrafast library for short-read single-gap alignment.
BIBM Workshops
Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
2012 Misc conf
New and Efficient Approaches to the Quasiperiodic Characterisation of a String.
PSC
Tomás Flouri, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Simon J. Puglisi, William F. Smyth, Wojciech Tyczynski
2012 J jnl
On left and right seeds of a string.
J. Discrete Algorithms
Michalis Christou, Maxime Crochemore, Ondrej Guth, Costas S. Iliopoulos, Solon P. Pissis
2012 J jnl
Parallel Algorithms for Mapping Short degenerate and Weighted DNA Sequences to a Reference genome.
Int. J. Found. Comput. Sci.
Costas S. Iliopoulos, Mirka Miller, Solon P. Pissis
2012 J jnl
Tree template matching in ranked ordered trees by pushdown automata.
J. Discrete Algorithms
Tomás Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis
2011 — conf
Approximate string-matching with a single gap for sequence alignment.
BCB
Tomás Flouri, Kunsoo Park, Kimon Frousios, Solon P. Pissis, Costas S. Iliopoulos, German Tischler
2011 C conf
Computing All Subtree Repeats in Ordered Ranked Trees.
SPIRE
Michalis Christou, Maxime Crochemore, Tomás Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis
2011 J jnl
Construction of Antimagic Labeling for the Cartesian Product of Regular Graphs.
Math. Comput. Sci.
Oudone Phanalasy, Mirka Miller, Costas S. Iliopoulos, Solon P. Pissis, Elaheh Vaezpour
2011 — conf
DynMap: mapping short reads to multiple related genomes.
BCB
Tomás Flouri, Costas S. Iliopoulos, Solon P. Pissis
2011 J jnl
Efficient Seeds Computation Revisited
CoRR
Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen
2011 B conf
Efficient Seeds Computation Revisited.
CPM
Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen
2011 Misc conf
On the Right-Seed Array of a String.
COCOON
Michalis Christou, Maxime Crochemore, Ondrej Guth, Costas S. Iliopoulos, Solon P. Pissis
2011 C conf
Tree Indexing by Pushdown Automata and Repeats of Subtrees.
FedCSIS
Tomás Flouri, Jan Janousek, Borivoj Melichar, Costas S. Iliopoulos, Solon P. Pissis
2011 C conf
Tree Template Matching in Ranked Ordered Trees by Pushdown Automata.
CIAA
Tomás Flouri, Jan Janousek, Borivoj Melichar, Costas S. Iliopoulos, Solon P. Pissis
2010 — conf
A Parallel Algorithm for Fixed-Length Approximate String-Matching with
Algorithms and Applications
Maxime Crochemore, Costas S. Iliopoulos, Solon P. Pissis
2010 — conf
An algorithm for mapping short reads to a dynamically changing genomic sequence.
BIBM
Tomás Flouri, Jan Holub, Costas S. Iliopoulos, Solon P. Pissis
2010 B conf
Cover Array String Reconstruction.
CPM
Maxime Crochemore, Costas S. Iliopoulos, Solon P. Pissis, German Tischler
2010 — conf
REAL: an efficient REad ALigner for next generation sequencing reads.
BCB
Kimon Frousios, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis, German Tischler
2009 — conf
A Parallel Algorithm for the Fixed-length Approximate String Matching Problem for High Throughput Sequencing Technologies.
PARCO
Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis
2009 J jnl
Algorithms for mapping short degenerate and weighted sequences to a reference genome.
Int. J. Comput. Biol. Drug Des.
Pavlos Antoniou, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis
2009 Misc conf
Parallel Algorithms for Degenerate and Weighted Sequences Derived from High Throughput Sequencing Technologies.
PSC
Costas S. Iliopoulos, Mirka Miller, Solon P. Pissis
2009 — conf
Practical and Efficient Algorithms for Degenerate and Weighted Sequences Derived from High Throughput Sequencing Technologies.
IJCBS
Pavlos Antoniou, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis